Wall clock time and date at job start Mon Mar 30 2020 07:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99633 * 0.54561 * 6 5 4 8 8 S 1.76198 * 119.99821 * 179.72349 * 7 6 5 9 9 O 1.42106 * 102.99713 * 156.12816 * 8 7 6 10 10 C 1.81398 * 103.00273 * 269.97916 * 8 7 6 11 11 H 1.08994 * 109.47600 * 295.00166 * 10 8 7 12 12 C 1.53003 * 109.46717 * 55.00435 * 10 8 7 13 13 C 1.50701 * 109.47237 * 174.99726 * 10 8 7 14 14 H 1.08003 * 120.00073 * 0.02562 * 13 10 8 15 15 C 1.37872 * 120.00264 * 179.97438 * 13 10 8 16 16 N 1.31518 * 120.00495 * 180.02562 * 15 13 10 17 17 Si 1.86799 * 119.99883 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.47343 * 89.99520 * 17 15 13 19 19 H 1.48496 * 109.47302 * 209.99862 * 17 15 13 20 20 H 1.48504 * 109.47229 * 329.99321 * 17 15 13 21 21 C 1.38237 * 120.00237 * 359.70804 * 7 6 5 22 22 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00082 * 180.27375 * 6 5 4 32 32 H 1.09003 * 109.46884 * 299.99160 * 12 10 8 33 33 H 1.08990 * 109.47627 * 59.99925 * 12 10 8 34 34 H 1.09000 * 109.46785 * 179.97438 * 12 10 8 35 35 H 0.96990 * 120.00246 * 180.02562 * 16 15 13 36 36 H 1.07997 * 119.99822 * 179.97438 * 21 7 6 37 37 H 1.07991 * 120.00142 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9532 -2.0140 -3.4879 8 16 3.5400 -2.8449 -4.9266 9 8 4.7009 -3.5165 -4.4567 10 6 2.2328 -4.0578 -5.2591 11 1 2.1895 -4.7784 -4.4425 12 6 0.8876 -3.3385 -5.3765 13 6 2.5317 -4.7776 -6.5489 14 1 3.4195 -4.5305 -7.1121 15 6 1.6724 -5.7525 -7.0096 16 7 1.9334 -6.3810 -8.1349 17 14 0.1372 -6.1805 -6.0352 18 1 -0.9896 -5.3244 -6.4854 19 1 -0.2070 -7.6081 -6.2556 20 1 0.3878 -5.9494 -4.5898 21 6 3.2875 -2.4861 -2.2324 22 6 2.8271 -1.8343 -1.1037 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.0688 0.6339 -2.5850 31 1 1.8978 -0.5209 -4.5956 32 1 0.6713 -2.8179 -4.4436 33 1 0.9309 -2.6179 -6.1931 34 1 0.1022 -4.0672 -5.5768 35 1 1.3287 -7.0665 -8.4591 36 1 3.9079 -3.3646 -2.1334 37 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084260547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:35 Heat of formation + Delta-G solvation = -27.654668 kcal Electronic energy + Delta-G solvation = -17956.416736 eV Core-core repulsion = 15210.859548 eV Total energy + Delta-G solvation = -2745.557189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37639 -35.45699 -34.86547 -34.02715 -31.24177 -30.76971 -29.65545 -27.33731 -25.22709 -23.45248 -22.56637 -21.58758 -20.08109 -17.76377 -16.78683 -16.17675 -15.41616 -15.17265 -15.00413 -14.17022 -14.00243 -13.82504 -13.67287 -13.42650 -13.15021 -12.67441 -12.58100 -12.44726 -12.27278 -12.05737 -11.44842 -11.35340 -11.23395 -11.10425 -10.88979 -10.77452 -10.64686 -10.33496 -9.81943 -9.39807 -9.08076 -8.73610 -8.72470 -8.66069 -7.42346 -6.19705 -4.24004 1.22157 1.58033 2.63402 3.19436 3.32523 3.34769 3.55644 3.95003 4.32318 4.54848 4.65246 4.71138 5.01189 5.09228 5.14166 5.17299 5.29351 5.41537 5.53137 5.60340 5.62289 5.76498 5.79013 6.01716 6.03766 6.05631 6.17044 6.20107 6.24215 6.33179 6.46618 6.61461 6.68090 6.77747 7.04685 7.14154 7.49343 8.20611 8.75530 9.40104 10.91609 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.005460 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.424991 B = 5127.078789 C = 5672.231475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.143 4.143 4 C -0.057 4.057 5 C -0.136 4.136 6 C -0.043 4.043 7 C -0.449 4.449 8 S 1.308 4.692 9 O -0.868 6.868 10 C -0.277 4.277 11 H 0.047 0.953 12 C -0.132 4.132 13 C -0.508 4.508 14 H 0.082 0.918 15 C 0.084 3.916 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.269 1.269 21 C -0.054 4.054 22 C -0.137 4.137 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.998 16.122 12.226 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.200 4.200 4 C -0.057 4.057 5 C -0.155 4.155 6 C -0.062 4.062 7 C -0.544 4.544 8 S 1.508 4.492 9 O -0.864 6.864 10 C -0.398 4.398 11 H 0.065 0.935 12 C -0.190 4.190 13 C -0.546 4.546 14 H 0.100 0.900 15 C -0.121 4.121 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.224 1.224 20 H -0.195 1.195 21 C -0.073 4.073 22 C -0.157 4.157 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.141 0.859 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.170 16.162 11.640 20.168 hybrid contribution -1.320 -1.901 2.306 3.267 sum -4.490 14.261 13.946 20.445 Atomic orbital electron populations 1.21854 0.94264 1.02124 1.01871 1.20164 0.96027 0.96086 0.95499 1.21845 1.01270 0.95023 1.01869 1.19919 0.96190 0.94913 0.94705 1.21014 1.01611 1.00750 0.92152 1.20855 0.93584 0.92997 0.98804 1.28312 1.07269 1.06087 1.12709 1.69082 0.82500 1.01595 0.96008 1.92986 1.38234 1.77229 1.77946 1.25233 1.04711 1.06329 1.03485 0.93468 1.21876 0.97132 0.99924 1.00102 1.20202 1.10538 1.20241 1.03662 0.89997 1.24902 0.97779 0.94945 0.94441 1.69865 1.37678 1.24729 1.20447 0.86750 0.83417 0.76485 0.81150 1.20139 1.22393 1.19454 1.21142 0.95914 0.98278 0.92005 1.21086 0.99703 0.96421 0.98442 0.92240 0.92525 0.92509 0.90687 0.92266 0.92517 0.92538 0.86048 0.84762 0.94365 0.91396 0.93654 0.92253 0.85865 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.00 37.16 0.33 -0.94 16 2 C -0.06 -0.58 3.09 -91.77 -0.28 -0.86 16 3 C -0.14 -1.19 9.01 37.16 0.33 -0.86 16 4 C -0.06 -0.72 4.78 -104.62 -0.50 -1.22 16 5 C -0.14 -1.68 8.71 -39.58 -0.34 -2.02 16 6 C -0.04 -0.59 8.54 -39.58 -0.34 -0.93 16 7 C -0.45 -7.61 4.80 -39.58 -0.19 -7.80 16 8 S 1.31 25.32 12.99 -107.50 -1.40 23.92 16 9 O -0.87 -21.60 16.90 -35.23 -0.60 -22.19 16 10 C -0.28 -6.38 2.39 -27.88 -0.07 -6.45 16 11 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 12 C -0.13 -2.59 8.32 37.16 0.31 -2.29 16 13 C -0.51 -13.88 9.16 -34.44 -0.32 -14.20 16 14 H 0.08 2.36 7.96 -52.48 -0.42 1.94 16 15 C 0.08 2.38 5.45 -17.82 -0.10 2.28 16 16 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 17 Si 0.89 21.94 24.37 -169.99 -4.14 17.79 16 18 H -0.27 -6.37 6.87 56.52 0.39 -5.98 16 19 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 21 C -0.05 -0.96 9.44 -39.58 -0.37 -1.33 16 22 C -0.14 -2.01 9.67 -39.58 -0.38 -2.39 16 23 H 0.06 0.51 7.37 -51.93 -0.38 0.12 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.70 7.88 -51.93 -0.41 0.30 16 27 H 0.06 0.47 7.41 -51.93 -0.38 0.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.12 1.17 7.10 -52.48 -0.37 0.80 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.04 0.65 6.38 -51.93 -0.33 0.32 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.12 2.37 7.45 -52.49 -0.39 1.98 16 37 H 0.12 1.47 7.95 -52.49 -0.42 1.05 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -34.60 308.15 -8.00 -42.60 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.37 Total: -1.93 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: -1.91 Total: -39.00 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.83 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.60 Total: -22.19 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.79 kcal Atomic # 16 Polarization: 25.32 SS G_CDS: -1.40 Total: 23.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.60 -8.00 -42.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.942 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds