Wall clock time and date at job start Mon Mar 30 2020 07:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99633 * 0.54561 * 6 5 4 8 8 S 1.76198 * 119.99821 * 179.72349 * 7 6 5 9 9 O 1.42106 * 102.99713 * 156.12816 * 8 7 6 10 10 C 1.81398 * 103.00273 * 269.97916 * 8 7 6 11 11 H 1.08994 * 109.47600 * 295.00166 * 10 8 7 12 12 C 1.53003 * 109.46717 * 55.00435 * 10 8 7 13 13 C 1.50701 * 109.47237 * 174.99726 * 10 8 7 14 14 H 1.08003 * 120.00073 * 0.02562 * 13 10 8 15 15 C 1.37872 * 120.00264 * 179.97438 * 13 10 8 16 16 N 1.31518 * 120.00495 * 180.02562 * 15 13 10 17 17 Si 1.86799 * 119.99883 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.47343 * 89.99520 * 17 15 13 19 19 H 1.48496 * 109.47302 * 209.99862 * 17 15 13 20 20 H 1.48504 * 109.47229 * 329.99321 * 17 15 13 21 21 C 1.38237 * 120.00237 * 359.70804 * 7 6 5 22 22 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00082 * 180.27375 * 6 5 4 32 32 H 1.09003 * 109.46884 * 299.99160 * 12 10 8 33 33 H 1.08990 * 109.47627 * 59.99925 * 12 10 8 34 34 H 1.09000 * 109.46785 * 179.97438 * 12 10 8 35 35 H 0.96990 * 120.00246 * 180.02562 * 16 15 13 36 36 H 1.07997 * 119.99822 * 179.97438 * 21 7 6 37 37 H 1.07991 * 120.00142 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9532 -2.0140 -3.4879 8 16 3.5400 -2.8449 -4.9266 9 8 4.7009 -3.5165 -4.4567 10 6 2.2328 -4.0578 -5.2591 11 1 2.1895 -4.7784 -4.4425 12 6 0.8876 -3.3385 -5.3765 13 6 2.5317 -4.7776 -6.5489 14 1 3.4195 -4.5305 -7.1121 15 6 1.6724 -5.7525 -7.0096 16 7 1.9334 -6.3810 -8.1349 17 14 0.1372 -6.1805 -6.0352 18 1 -0.9896 -5.3244 -6.4854 19 1 -0.2070 -7.6081 -6.2556 20 1 0.3878 -5.9494 -4.5898 21 6 3.2875 -2.4861 -2.2324 22 6 2.8271 -1.8343 -1.1037 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.0688 0.6339 -2.5850 31 1 1.8978 -0.5209 -4.5956 32 1 0.6713 -2.8179 -4.4436 33 1 0.9309 -2.6179 -6.1931 34 1 0.1022 -4.0672 -5.5768 35 1 1.3287 -7.0665 -8.4591 36 1 3.9079 -3.3646 -2.1334 37 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084260547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:34 Heat of formation + Delta-G solvation = -51.065036 kcal Electronic energy + Delta-G solvation = -17957.431886 eV Core-core repulsion = 15210.859548 eV Total energy + Delta-G solvation = -2746.572338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43372 -36.73471 -36.34665 -35.93226 -33.19863 -31.91504 -30.73011 -27.95250 -27.13564 -24.48162 -23.79981 -23.32513 -20.99757 -19.28344 -18.69262 -17.45592 -17.12639 -16.59490 -16.10338 -15.64411 -15.30320 -15.19639 -14.79958 -14.60141 -14.38911 -14.25294 -13.95860 -13.76367 -13.39625 -13.09658 -12.88381 -12.83330 -12.63774 -12.30758 -12.15847 -12.03630 -11.85836 -11.62102 -11.51986 -11.38624 -10.87578 -10.68268 -9.89565 -9.86428 -9.10257 -8.36732 -6.44872 0.00586 0.45451 1.12956 1.24103 1.32451 1.41334 2.06761 2.27563 2.72742 2.95049 3.15380 3.68818 3.83492 4.09586 4.17585 4.32375 4.44733 4.47981 4.55572 4.55935 4.63280 4.72564 4.85389 4.92783 4.94672 5.02268 5.08414 5.09518 5.15984 5.31872 5.41430 5.41764 5.42937 5.46344 5.50875 5.67306 6.02542 6.05377 6.59367 7.22532 8.77978 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.005460 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.424991 B = 5127.078789 C = 5672.231475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.047 4.047 5 C -0.130 4.130 6 C -0.036 4.036 7 C -0.469 4.469 8 S 1.365 4.635 9 O -0.934 6.934 10 C -0.292 4.292 11 H 0.015 0.985 12 C -0.130 4.130 13 C -0.513 4.513 14 H 0.051 0.949 15 C 0.029 3.971 16 N -0.937 5.937 17 Si 0.948 3.052 18 H -0.243 1.243 19 H -0.302 1.302 20 H -0.271 1.271 21 C -0.085 4.085 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.162 0.838 31 H 0.175 0.825 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.031 0.969 35 H 0.270 0.730 36 H 0.088 0.912 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 19.675 13.902 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.047 4.047 5 C -0.148 4.148 6 C -0.055 4.055 7 C -0.567 4.567 8 S 1.568 4.432 9 O -0.930 6.930 10 C -0.411 4.411 11 H 0.034 0.966 12 C -0.188 4.188 13 C -0.552 4.552 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.576 5.576 17 Si 0.776 3.224 18 H -0.168 1.168 19 H -0.230 1.230 20 H -0.196 1.196 21 C -0.104 4.104 22 C -0.166 4.166 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.179 0.821 31 H 0.192 0.808 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.942 19.702 13.285 24.495 hybrid contribution -0.388 -2.864 1.940 3.481 sum -6.330 16.839 15.225 23.567 Atomic orbital electron populations 1.21857 0.93083 1.01771 1.03267 1.20250 0.96861 0.96720 0.93961 1.21842 1.00778 0.93933 1.03251 1.20369 0.94193 0.93569 0.96578 1.21484 1.00893 1.01297 0.91170 1.21340 0.91556 0.91132 1.01451 1.27765 1.10339 1.07951 1.10619 1.68164 0.79609 0.98630 0.96796 1.92867 1.41742 1.77932 1.80422 1.25345 1.08731 1.07111 0.99886 0.96634 1.21842 0.93866 1.00035 1.03009 1.20505 1.09189 1.20567 1.04924 0.93100 1.25725 1.01089 0.95002 0.95306 1.69996 1.39305 1.25914 1.22389 0.85844 0.80755 0.76325 0.79516 1.16765 1.22974 1.19649 1.21060 0.97179 0.98373 0.93793 1.21249 1.00161 0.97226 0.97970 0.91304 0.93745 0.90774 0.90578 0.91295 0.90831 0.93369 0.82068 0.80778 0.91338 0.88247 0.95080 0.92083 0.89347 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.00 71.98 0.65 -1.22 16 2 C -0.06 -0.92 3.09 -11.54 -0.04 -0.96 16 3 C -0.14 -1.72 9.01 71.98 0.65 -1.07 16 4 C -0.05 -1.02 4.78 -19.87 -0.09 -1.12 16 5 C -0.13 -2.54 8.71 22.27 0.19 -2.34 16 6 C -0.04 -0.82 8.54 22.27 0.19 -0.63 16 7 C -0.47 -15.32 4.80 22.27 0.11 -15.21 16 8 S 1.37 53.63 12.99 -56.49 -0.73 52.90 16 9 O -0.93 -48.96 16.90 -148.98 -2.52 -51.48 16 10 C -0.29 -13.56 2.39 29.85 0.07 -13.49 16 11 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 12 C -0.13 -4.76 8.32 71.98 0.60 -4.16 16 13 C -0.51 -28.98 9.16 25.60 0.23 -28.74 16 14 H 0.05 3.10 7.96 -2.91 -0.02 3.07 16 15 C 0.03 1.66 5.45 84.65 0.46 2.12 16 16 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 17 Si 0.95 45.41 24.37 68.60 1.67 47.08 16 18 H -0.24 -10.34 6.87 99.48 0.68 -9.65 16 19 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 20 H -0.27 -12.92 6.53 99.48 0.65 -12.27 16 21 C -0.08 -3.01 9.44 22.27 0.21 -2.80 16 22 C -0.15 -4.11 9.67 22.27 0.22 -3.90 16 23 H 0.07 0.79 7.37 -2.39 -0.02 0.77 16 24 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.18 7.88 -2.39 -0.02 1.16 16 27 H 0.07 0.72 7.41 -2.39 -0.02 0.70 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.16 1.96 7.10 -2.91 -0.02 1.94 16 31 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.07 2.08 6.38 -2.39 -0.02 2.07 16 33 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.03 1.23 3.27 -2.39 -0.01 1.22 16 35 H 0.27 15.53 8.31 -92.72 -0.77 14.76 16 36 H 0.09 3.67 7.45 -2.91 -0.02 3.65 16 37 H 0.13 3.14 7.95 -2.92 -0.02 3.12 16 Total: -1.00 -79.94 308.15 3.13 -76.81 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.97 Total: 5.70 kcal Atomic # 6 Polarization: -76.98 SS G_CDS: 3.45 Total: -73.53 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.30 Total: -57.48 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.52 Total: -51.48 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.67 Total: 47.08 kcal Atomic # 16 Polarization: 53.63 SS G_CDS: -0.73 Total: 52.90 kcal Total: -79.94 3.13 -76.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.742 kcal (2) G-P(sol) polarization free energy of solvation -79.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds