Wall clock time and date at job start Mon Mar 30 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 H 1.08996 * 109.47182 * 305.00223 * 3 2 1 5 5 C 1.53001 * 109.47455 * 184.99745 * 3 2 1 6 6 S 1.81404 * 109.47169 * 64.99751 * 3 2 1 7 7 O 1.42102 * 109.46776 * 58.61397 * 6 3 2 8 8 C 1.81393 * 103.00308 * 175.00042 * 6 3 2 9 9 H 1.09002 * 109.47323 * 294.99960 * 8 6 3 10 10 C 1.50702 * 109.47194 * 54.99992 * 8 6 3 11 11 H 1.07995 * 120.00314 * 234.26902 * 10 8 6 12 12 C 1.37883 * 119.99882 * 54.26033 * 10 8 6 13 13 N 1.31518 * 119.99782 * 348.95579 * 12 10 8 14 14 Si 1.86800 * 120.00016 * 168.94594 * 12 10 8 15 15 H 1.48502 * 109.46830 * 90.00304 * 14 12 10 16 16 H 1.48499 * 109.47191 * 210.00559 * 14 12 10 17 17 H 1.48498 * 109.47097 * 330.00505 * 14 12 10 18 18 C 1.50703 * 109.47382 * 175.00008 * 8 6 3 19 19 C 1.38235 * 120.00048 * 146.97113 * 18 8 6 20 20 C 1.38236 * 120.00122 * 179.78700 * 19 18 8 21 21 C 1.38229 * 119.99578 * 0.44746 * 20 19 18 22 22 C 1.38245 * 120.00562 * 359.80930 * 21 20 19 23 23 C 1.38231 * 119.99960 * 327.24914 * 18 8 6 24 24 H 1.08997 * 109.47037 * 299.99875 * 1 2 3 25 25 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46893 * 60.00323 * 1 2 3 27 27 H 1.09009 * 109.47210 * 119.99648 * 2 1 3 28 28 H 1.08997 * 109.47506 * 239.99874 * 2 1 3 29 29 H 1.09001 * 109.47093 * 59.99872 * 5 3 2 30 30 H 1.08999 * 109.47470 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.46932 * 300.00093 * 5 3 2 32 32 H 0.96998 * 119.99540 * 179.97438 * 13 12 10 33 33 H 1.08004 * 120.00074 * 0.02562 * 19 18 8 34 34 H 1.07998 * 120.00259 * 180.27570 * 20 19 18 35 35 H 1.08007 * 120.00113 * 179.83296 * 21 20 19 36 36 H 1.07994 * 120.00213 * 180.02562 * 22 21 20 37 37 H 1.08008 * 119.99946 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 16 1.5600 2.2536 1.5500 7 8 2.1000 1.5323 2.6489 8 6 2.3709 3.8719 1.4319 9 1 3.4526 3.7376 1.4376 10 6 1.9555 4.5497 0.1516 11 1 2.7056 4.9023 -0.5407 12 6 0.6178 4.7195 -0.1359 13 7 -0.2933 4.1062 0.5876 14 14 0.0995 5.8208 -1.5529 15 1 0.0098 5.0162 -2.7979 16 1 -1.2258 6.4206 -1.2546 17 1 1.1025 6.9010 -1.7328 18 6 1.9645 4.7244 2.6063 19 6 2.8563 5.6354 3.1406 20 6 2.4820 6.4205 4.2151 21 6 1.2190 6.2879 4.7611 22 6 0.3289 5.3731 4.2302 23 6 0.7018 4.5912 3.1529 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.8533 0.9571 -1.0570 30 1 3.9282 2.4720 -0.1252 31 1 3.9994 0.9054 0.7162 32 1 -1.2344 4.2260 0.3855 33 1 3.8443 5.7366 2.7162 34 1 3.1772 7.1354 4.6297 35 1 0.9274 6.8994 5.6023 36 1 -0.6579 5.2698 4.6565 37 1 0.0064 3.8765 2.7380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084260899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:13 Heat of formation + Delta-G solvation = -32.376284 kcal Electronic energy + Delta-G solvation = -18916.186535 eV Core-core repulsion = 16170.424601 eV Total energy + Delta-G solvation = -2745.761933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.28379 -35.00104 -34.41088 -33.71614 -31.04351 -29.94263 -29.67632 -27.25744 -23.55331 -23.12017 -21.66590 -20.80535 -20.21099 -16.98124 -16.38656 -15.74701 -15.15931 -14.89170 -14.37830 -13.97587 -13.66957 -13.29294 -12.99604 -12.89337 -12.66569 -12.26198 -12.20277 -11.81323 -11.67818 -11.30731 -11.22059 -11.05772 -10.85976 -10.67694 -10.57499 -10.29333 -10.23866 -10.07114 -9.90845 -9.67802 -8.96647 -8.46734 -7.99078 -7.65900 -6.78862 -6.20378 -4.36116 2.29262 2.36076 2.97806 3.17227 3.25012 3.29013 4.07157 4.18279 4.79843 4.96186 5.22717 5.53141 5.60481 5.68263 5.71182 5.75744 5.86211 6.02627 6.10835 6.15683 6.18721 6.36893 6.41393 6.47763 6.51102 6.57705 6.61696 6.70746 6.78276 6.89115 7.01125 7.05851 7.32152 7.42254 7.61311 7.70497 7.80624 8.00254 8.51580 9.19240 10.64028 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.010187 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.727974 B = 2747.880525 C = 3616.787487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.404 4.404 4 H 0.123 0.877 5 C -0.140 4.140 6 S 1.263 4.737 7 O -0.917 6.917 8 C -0.210 4.210 9 H 0.052 0.948 10 C -0.489 4.489 11 H 0.069 0.931 12 C 0.074 3.926 13 N -0.876 5.876 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.274 1.274 18 C -0.011 4.011 19 C -0.128 4.128 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.129 4.129 23 C -0.104 4.104 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.278 0.722 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 -0.675 -0.427 1.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C -0.520 4.520 4 H 0.141 0.859 5 C -0.198 4.198 6 S 1.467 4.533 7 O -0.912 6.912 8 C -0.329 4.329 9 H 0.070 0.930 10 C -0.530 4.530 11 H 0.087 0.913 12 C -0.131 4.131 13 N -0.515 5.515 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.198 1.198 18 C -0.013 4.013 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.169 4.169 22 C -0.147 4.147 23 C -0.123 4.123 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.370 -1.173 0.327 2.665 hybrid contribution 1.991 0.796 -1.054 2.390 sum -0.379 -0.378 -0.727 0.903 Atomic orbital electron populations 1.21826 0.95446 1.00844 1.03014 1.21168 0.96136 0.94943 1.01193 1.27378 0.99966 1.03572 1.21101 0.85851 1.21768 0.95160 1.02012 1.00840 1.72524 1.15231 0.85109 0.80478 1.92717 1.82130 1.70227 1.46099 1.23993 1.02681 1.09186 0.97018 0.92964 1.20503 0.92417 1.39052 1.00990 0.91259 1.24927 0.96118 0.95145 0.96891 1.69477 1.02079 1.40574 1.39345 0.86426 0.78323 0.80963 0.81644 1.20196 1.20533 1.19850 1.19731 0.93540 0.95740 0.92321 1.20934 0.99437 0.97394 0.96944 1.20865 0.96481 1.00074 0.97722 1.20857 0.94717 1.00383 1.00907 1.21070 0.98898 0.97368 0.97401 1.21616 0.96286 1.00271 0.94093 0.91815 0.93361 0.91970 0.92627 0.92705 0.93496 0.91854 0.93780 0.91067 0.87478 0.87560 0.87618 0.87142 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.74 37.16 0.36 -2.07 16 2 C -0.10 -1.71 5.39 -26.73 -0.14 -1.85 16 3 C -0.40 -8.12 2.41 -26.73 -0.06 -8.18 16 4 H 0.12 2.47 7.84 -51.93 -0.41 2.06 16 5 C -0.14 -2.73 8.96 37.16 0.33 -2.39 16 6 S 1.26 28.90 7.19 -107.50 -0.77 28.13 16 7 O -0.92 -24.81 18.07 -35.23 -0.64 -25.45 16 8 C -0.21 -4.97 2.07 -29.03 -0.06 -5.03 16 9 H 0.05 1.25 7.11 -51.92 -0.37 0.88 16 10 C -0.49 -11.56 7.82 -34.44 -0.27 -11.83 16 11 H 0.07 1.64 7.84 -52.49 -0.41 1.23 16 12 C 0.07 1.69 5.12 -17.82 -0.09 1.60 16 13 N -0.88 -19.33 8.57 55.43 0.47 -18.85 16 14 Si 0.90 18.43 29.55 -169.99 -5.02 13.41 16 15 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 C -0.01 -0.26 4.75 -104.62 -0.50 -0.76 16 19 C -0.13 -2.76 9.69 -39.58 -0.38 -3.14 16 20 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16 21 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 22 C -0.13 -2.55 10.05 -39.58 -0.40 -2.94 16 23 C -0.10 -2.33 7.94 -39.59 -0.31 -2.64 16 24 H 0.06 1.05 7.13 -51.93 -0.37 0.68 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 1.06 8.09 -51.92 -0.42 0.64 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.26 6.59 -51.93 -0.34 0.92 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.28 5.75 8.31 -40.82 -0.34 5.41 16 33 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 34 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.15 3.36 5.17 -52.48 -0.27 3.09 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -27.70 309.74 -9.14 -36.85 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.53 Total: 6.59 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: -2.32 Total: -45.34 kcal Atomic # 7 Polarization: -19.33 SS G_CDS: 0.47 Total: -18.85 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.64 Total: -25.45 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Atomic # 16 Polarization: 28.90 SS G_CDS: -0.77 Total: 28.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.70 -9.14 -36.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.470 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds