Wall clock time and date at job start Mon Mar 30 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 H 1.09000 * 109.47170 * 304.99740 * 3 2 1 5 5 C 1.53002 * 109.47466 * 185.00014 * 3 2 1 6 6 S 1.81402 * 109.47400 * 64.99546 * 3 2 1 7 7 O 1.42096 * 109.46989 * 291.39366 * 6 3 2 8 8 C 1.81400 * 103.00230 * 175.00126 * 6 3 2 9 9 H 1.08998 * 109.47303 * 301.54673 * 8 6 3 10 10 C 1.50699 * 109.47164 * 61.54156 * 8 6 3 11 11 H 1.07994 * 120.00208 * 244.38503 * 10 8 6 12 12 C 1.37883 * 119.99634 * 64.38178 * 10 8 6 13 13 N 1.31511 * 119.99958 * 2.04397 * 12 10 8 14 14 Si 1.86796 * 119.99730 * 182.05085 * 12 10 8 15 15 H 1.48501 * 109.47601 * 90.00057 * 14 12 10 16 16 H 1.48498 * 109.47063 * 209.99884 * 14 12 10 17 17 H 1.48501 * 109.47420 * 329.99703 * 14 12 10 18 18 C 1.50697 * 109.46991 * 181.54444 * 8 6 3 19 19 C 1.38234 * 119.99690 * 148.29736 * 18 8 6 20 20 C 1.38239 * 119.99816 * 179.78174 * 19 18 8 21 21 C 1.38236 * 119.99605 * 0.44686 * 20 19 18 22 22 C 1.38230 * 120.00157 * 359.80662 * 21 20 19 23 23 C 1.38227 * 120.00032 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46626 * 60.00389 * 1 2 3 26 26 H 1.09003 * 109.46973 * 300.00289 * 1 2 3 27 27 H 1.08997 * 109.47328 * 119.99424 * 2 1 3 28 28 H 1.08994 * 109.47539 * 239.99891 * 2 1 3 29 29 H 1.09005 * 109.47121 * 59.99457 * 5 3 2 30 30 H 1.08999 * 109.47362 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.46702 * 300.00012 * 5 3 2 32 32 H 0.97008 * 119.99658 * 179.97438 * 13 12 10 33 33 H 1.08003 * 120.00433 * 359.97438 * 19 18 8 34 34 H 1.08002 * 120.00425 * 180.26894 * 20 19 18 35 35 H 1.08005 * 119.99303 * 179.82946 * 21 20 19 36 36 H 1.08005 * 119.99572 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.99701 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 16 1.5601 2.2536 1.5500 7 8 0.1504 2.4308 1.5750 8 6 2.3710 3.8720 1.4318 9 1 3.4462 3.7324 1.3204 10 6 1.8347 4.6165 0.2363 11 1 2.4894 4.8573 -0.5881 12 6 0.5081 4.9901 0.1951 13 7 -0.2796 4.7324 1.2162 14 14 -0.1702 5.8622 -1.3111 15 1 -0.6807 4.8567 -2.2774 16 1 -1.2774 6.7642 -0.9041 17 1 0.9082 6.6591 -1.9493 18 6 2.0943 4.6650 2.6830 19 6 3.0336 5.5633 3.1537 20 6 2.7780 6.2940 4.2990 21 6 1.5869 6.1196 4.9786 22 6 0.6499 5.2175 4.5108 23 6 0.9036 4.4901 3.3631 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8533 0.9570 -1.0571 30 1 3.9282 2.4721 -0.1262 31 1 3.9994 0.9054 0.7161 32 1 -1.2129 4.9956 1.1873 33 1 3.9660 5.6965 2.6251 34 1 3.5100 6.9991 4.6645 35 1 1.3884 6.6886 5.8749 36 1 -0.2809 5.0816 5.0416 37 1 0.1713 3.7856 2.9973 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084260904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:18 Heat of formation + Delta-G solvation = -4.380939 kcal Electronic energy + Delta-G solvation = -19075.397703 eV Core-core repulsion = 16330.849739 eV Total energy + Delta-G solvation = -2744.547964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.06936 -34.99784 -34.15679 -33.54260 -30.72873 -29.63478 -29.53306 -27.10577 -23.37613 -23.02807 -21.42722 -20.82118 -20.09990 -16.68925 -16.14408 -15.44312 -15.33661 -14.75191 -14.21317 -13.77505 -13.49975 -13.34390 -12.92500 -12.78494 -12.54376 -12.19673 -11.99683 -11.46401 -11.35930 -11.28003 -10.95776 -10.87574 -10.74835 -10.71241 -10.40457 -10.28301 -10.15627 -10.01730 -9.56935 -9.49494 -8.67950 -8.11783 -7.76788 -7.44140 -6.83208 -5.83797 -4.05678 2.50983 2.64308 3.12591 3.25399 3.33116 3.34213 4.09084 4.36492 5.02927 5.24599 5.34697 5.37522 5.67704 5.69277 5.85996 5.98228 5.99909 6.07383 6.13260 6.17966 6.30416 6.39241 6.49817 6.51821 6.59123 6.67884 6.81142 6.92028 6.94188 6.96289 7.12645 7.35553 7.55193 7.72235 7.84078 7.99519 8.12049 8.31684 8.72389 9.46318 10.91015 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.009978 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.808303 B = 2805.462034 C = 3513.232598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.413 4.413 4 H 0.090 0.910 5 C -0.119 4.119 6 S 1.186 4.814 7 O -0.806 6.806 8 C -0.208 4.208 9 H 0.075 0.925 10 C -0.532 4.532 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.805 5.805 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.021 4.021 19 C -0.125 4.125 20 C -0.151 4.151 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.076 4.076 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.264 0.736 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -6.486 3.678 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.127 4.127 3 C -0.528 4.528 4 H 0.108 0.892 5 C -0.177 4.177 6 S 1.387 4.613 7 O -0.800 6.800 8 C -0.326 4.326 9 H 0.093 0.907 10 C -0.571 4.571 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.437 5.437 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.023 4.023 19 C -0.144 4.144 20 C -0.169 4.169 21 C -0.166 4.166 22 C -0.167 4.167 23 C -0.095 4.095 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.201 -6.905 4.436 9.716 hybrid contribution -1.146 2.192 -2.850 3.773 sum 4.055 -4.713 1.586 6.416 Atomic orbital electron populations 1.22065 0.95956 1.00542 1.04287 1.21120 0.95698 0.94775 1.01132 1.27379 1.01178 1.03145 1.21093 0.89171 1.21409 0.93303 1.02186 1.00848 1.69776 0.94553 0.98253 0.98760 1.93120 1.25033 1.83870 1.78027 1.24010 1.03028 1.09879 0.95697 0.90677 1.20568 0.94578 1.41502 1.00483 0.92230 1.25029 0.97285 0.95825 0.96165 1.69852 1.05645 1.40901 1.27253 0.86629 0.78794 0.79596 0.83328 1.20759 1.21135 1.20052 1.19591 0.93598 0.96704 0.92404 1.20856 0.99486 0.97733 0.96330 1.20737 0.97467 1.01205 0.97511 1.20803 0.95321 1.00351 1.00088 1.21022 0.98513 0.99195 0.97981 1.22272 0.96225 1.00462 0.90518 0.93826 0.93355 0.89742 0.92062 0.92965 0.93771 0.91752 0.92571 0.92528 0.87810 0.88187 0.88405 0.88149 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.58 37.16 0.36 -2.60 16 2 C -0.09 -1.38 5.40 -26.73 -0.14 -1.52 16 3 C -0.41 -7.38 2.56 -26.73 -0.07 -7.45 16 4 H 0.09 1.94 8.03 -51.92 -0.42 1.52 16 5 C -0.12 -1.76 8.94 37.16 0.33 -1.43 16 6 S 1.19 23.38 11.13 -107.50 -1.20 22.18 16 7 O -0.81 -19.83 10.55 -35.23 -0.37 -20.20 16 8 C -0.21 -4.62 2.21 -29.04 -0.06 -4.69 16 9 H 0.08 1.48 6.74 -51.92 -0.35 1.13 16 10 C -0.53 -13.80 8.25 -34.44 -0.28 -14.09 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.82 4.97 -17.82 -0.09 1.73 16 13 N -0.80 -22.33 6.53 55.43 0.36 -21.97 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.02 -0.47 4.56 -104.63 -0.48 -0.95 16 19 C -0.12 -2.63 9.70 -39.58 -0.38 -3.01 16 20 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 21 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 22 C -0.15 -3.15 10.05 -39.59 -0.40 -3.55 16 23 C -0.08 -1.77 6.80 -39.59 -0.27 -2.04 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.65 5.58 -51.93 -0.29 1.36 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.01 6.47 -51.93 -0.34 0.67 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 34 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.17 4.39 3.98 -52.49 -0.21 4.19 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -30.62 300.19 -9.36 -39.98 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.38 Total: 4.71 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: -2.29 Total: -46.18 kcal Atomic # 7 Polarization: -22.33 SS G_CDS: 0.36 Total: -21.97 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.37 Total: -20.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 23.38 SS G_CDS: -1.20 Total: 22.18 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.62 -9.36 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.603 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds