Wall clock time and date at job start Mon Mar 30 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 H 1.09000 * 109.47170 * 304.99740 * 3 2 1 5 5 C 1.53002 * 109.47466 * 185.00014 * 3 2 1 6 6 S 1.81402 * 109.47400 * 64.99546 * 3 2 1 7 7 O 1.42096 * 109.46989 * 291.39366 * 6 3 2 8 8 C 1.81400 * 103.00230 * 175.00126 * 6 3 2 9 9 H 1.08998 * 109.47303 * 301.54673 * 8 6 3 10 10 C 1.50699 * 109.47164 * 61.54156 * 8 6 3 11 11 H 1.07994 * 120.00208 * 244.38503 * 10 8 6 12 12 C 1.37883 * 119.99634 * 64.38178 * 10 8 6 13 13 N 1.31511 * 119.99958 * 2.04397 * 12 10 8 14 14 Si 1.86796 * 119.99730 * 182.05085 * 12 10 8 15 15 H 1.48501 * 109.47601 * 90.00057 * 14 12 10 16 16 H 1.48498 * 109.47063 * 209.99884 * 14 12 10 17 17 H 1.48501 * 109.47420 * 329.99703 * 14 12 10 18 18 C 1.50697 * 109.46991 * 181.54444 * 8 6 3 19 19 C 1.38234 * 119.99690 * 148.29736 * 18 8 6 20 20 C 1.38239 * 119.99816 * 179.78174 * 19 18 8 21 21 C 1.38236 * 119.99605 * 0.44686 * 20 19 18 22 22 C 1.38230 * 120.00157 * 359.80662 * 21 20 19 23 23 C 1.38227 * 120.00032 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46626 * 60.00389 * 1 2 3 26 26 H 1.09003 * 109.46973 * 300.00289 * 1 2 3 27 27 H 1.08997 * 109.47328 * 119.99424 * 2 1 3 28 28 H 1.08994 * 109.47539 * 239.99891 * 2 1 3 29 29 H 1.09005 * 109.47121 * 59.99457 * 5 3 2 30 30 H 1.08999 * 109.47362 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.46702 * 300.00012 * 5 3 2 32 32 H 0.97008 * 119.99658 * 179.97438 * 13 12 10 33 33 H 1.08003 * 120.00433 * 359.97438 * 19 18 8 34 34 H 1.08002 * 120.00425 * 180.26894 * 20 19 18 35 35 H 1.08005 * 119.99303 * 179.82946 * 21 20 19 36 36 H 1.08005 * 119.99572 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.99701 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 16 1.5601 2.2536 1.5500 7 8 0.1504 2.4308 1.5750 8 6 2.3710 3.8720 1.4318 9 1 3.4462 3.7324 1.3204 10 6 1.8347 4.6165 0.2363 11 1 2.4894 4.8573 -0.5881 12 6 0.5081 4.9901 0.1951 13 7 -0.2796 4.7324 1.2162 14 14 -0.1702 5.8622 -1.3111 15 1 -0.6807 4.8567 -2.2774 16 1 -1.2774 6.7642 -0.9041 17 1 0.9082 6.6591 -1.9493 18 6 2.0943 4.6650 2.6830 19 6 3.0336 5.5633 3.1537 20 6 2.7780 6.2940 4.2990 21 6 1.5869 6.1196 4.9786 22 6 0.6499 5.2175 4.5108 23 6 0.9036 4.4901 3.3631 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8533 0.9570 -1.0571 30 1 3.9282 2.4721 -0.1262 31 1 3.9994 0.9054 0.7161 32 1 -1.2129 4.9956 1.1873 33 1 3.9660 5.6965 2.6251 34 1 3.5100 6.9991 4.6645 35 1 1.3884 6.6886 5.8749 36 1 -0.2809 5.0816 5.0416 37 1 0.1713 3.7856 2.9973 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084260904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:18 Heat of formation + Delta-G solvation = -20.990862 kcal Electronic energy + Delta-G solvation = -19076.117963 eV Core-core repulsion = 16330.849739 eV Total energy + Delta-G solvation = -2745.268224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69002 -36.37744 -35.92522 -35.37257 -32.52456 -31.25028 -30.87565 -28.88760 -25.10181 -24.47630 -23.03871 -22.27297 -21.67965 -18.60468 -17.70122 -17.07291 -16.97296 -16.60215 -15.78049 -15.39069 -14.99754 -14.97142 -14.59978 -14.16697 -14.12764 -13.80054 -13.58332 -13.17037 -12.94310 -12.86513 -12.76557 -12.61504 -12.41954 -12.13826 -12.00512 -11.87997 -11.65515 -11.49477 -11.34203 -11.19861 -10.66190 -9.81961 -9.40256 -9.12397 -8.53974 -7.81952 -6.08899 0.88103 1.03110 1.23674 1.27169 1.33214 1.57443 2.33584 2.47094 3.26696 3.38728 3.73664 4.03629 4.30597 4.37858 4.40590 4.42024 4.56996 4.73765 4.76562 4.85855 4.92469 5.00393 5.08349 5.09762 5.14942 5.27076 5.31865 5.48917 5.51664 5.53110 5.57596 5.66504 5.74472 5.94474 6.09165 6.21989 6.40477 6.57522 6.74918 7.41697 8.83354 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.009978 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.808303 B = 2805.462034 C = 3513.232598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.409 4.409 4 H 0.046 0.954 5 C -0.120 4.120 6 S 1.242 4.758 7 O -0.857 6.857 8 C -0.224 4.224 9 H 0.097 0.903 10 C -0.539 4.539 11 H 0.048 0.952 12 C 0.025 3.975 13 N -0.816 5.816 14 Si 0.923 3.077 15 H -0.289 1.289 16 H -0.289 1.289 17 H -0.269 1.269 18 C -0.041 4.041 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.162 4.162 23 C -0.097 4.097 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 -7.113 4.593 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.127 4.127 3 C -0.526 4.526 4 H 0.065 0.935 5 C -0.178 4.178 6 S 1.443 4.557 7 O -0.852 6.852 8 C -0.342 4.342 9 H 0.115 0.885 10 C -0.578 4.578 11 H 0.067 0.933 12 C -0.182 4.182 13 N -0.449 5.449 14 Si 0.751 3.249 15 H -0.216 1.216 16 H -0.215 1.215 17 H -0.194 1.194 18 C -0.043 4.043 19 C -0.156 4.156 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.181 4.181 23 C -0.116 4.116 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.324 -7.494 5.360 11.770 hybrid contribution -1.740 2.321 -3.138 4.274 sum 5.584 -5.173 2.221 7.930 Atomic orbital electron populations 1.22058 0.97684 1.01641 1.01588 1.21215 0.94128 0.93404 1.03940 1.27343 1.03639 1.04058 1.17583 0.93481 1.21470 0.90497 1.02355 1.03437 1.68929 0.92249 0.95374 0.99126 1.93044 1.28014 1.83875 1.80269 1.24220 1.04611 1.10996 0.94337 0.88514 1.20770 0.94192 1.41196 1.01671 0.93340 1.25550 0.98099 0.96957 0.97593 1.70097 1.04760 1.42071 1.27971 0.86095 0.78351 0.78775 0.81728 1.21561 1.21480 1.19373 1.19685 0.94075 0.97706 0.92843 1.21153 0.99782 0.97480 0.97151 1.21160 0.98037 1.00824 0.96499 1.21178 0.94655 0.99470 1.00916 1.21254 0.99638 0.99535 0.97675 1.22123 0.96353 1.01193 0.91941 0.90809 0.96063 0.92426 0.88473 0.90774 0.92203 0.92981 0.88737 0.93997 0.86311 0.84649 0.85022 0.87132 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 9.58 71.98 0.69 -5.19 16 2 C -0.09 -2.54 5.40 30.59 0.17 -2.38 16 3 C -0.41 -14.23 2.56 30.59 0.08 -14.15 16 4 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 5 C -0.12 -3.20 8.94 71.98 0.64 -2.56 16 6 S 1.24 49.05 11.13 -56.49 -0.63 48.43 16 7 O -0.86 -43.73 10.55 -148.98 -1.57 -45.30 16 8 C -0.22 -9.95 2.21 29.10 0.06 -9.88 16 9 H 0.10 3.72 6.74 -2.39 -0.02 3.70 16 10 C -0.54 -28.45 8.25 25.60 0.21 -28.24 16 11 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 12 C 0.03 1.41 4.97 84.66 0.42 1.83 16 13 N -0.82 -47.01 6.53 21.45 0.14 -46.87 16 14 Si 0.92 46.19 29.54 68.60 2.03 48.22 16 15 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 16 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 17 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 18 C -0.04 -1.86 4.56 -19.87 -0.09 -1.95 16 19 C -0.14 -5.51 9.70 22.27 0.22 -5.29 16 20 C -0.15 -5.26 10.05 22.27 0.22 -5.04 16 21 C -0.14 -5.24 10.05 22.27 0.22 -5.01 16 22 C -0.16 -6.80 10.05 22.27 0.22 -6.58 16 23 C -0.10 -4.58 6.80 22.27 0.15 -4.43 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 2.29 5.58 -2.39 -0.01 2.28 16 27 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.05 1.53 6.47 -2.39 -0.02 1.51 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 33 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 37 H 0.15 7.83 3.98 -2.91 -0.01 7.82 16 Total: -1.00 -68.78 300.19 4.23 -64.55 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 1.04 Total: 19.86 kcal Atomic # 6 Polarization: -92.10 SS G_CDS: 3.22 Total: -88.88 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.14 Total: -46.87 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.57 Total: -45.30 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.63 Total: 48.43 kcal Total: -68.78 4.23 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.562 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds