Wall clock time and date at job start Mon Mar 30 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 C 1.53000 * 109.47230 * 239.99856 * 2 1 3 5 5 S 1.81405 * 109.47356 * 120.00144 * 2 1 3 6 6 O 1.42098 * 109.47361 * 175.73899 * 5 2 1 7 7 C 1.81399 * 102.99855 * 59.35003 * 5 2 1 8 8 H 1.09001 * 109.47374 * 313.95852 * 7 5 2 9 9 C 1.50692 * 109.47241 * 73.95729 * 7 5 2 10 10 H 1.07996 * 120.00444 * 244.38415 * 9 7 5 11 11 C 1.37883 * 119.99582 * 64.65927 * 9 7 5 12 12 N 1.31507 * 120.00438 * 8.37198 * 11 9 7 13 13 Si 1.86806 * 119.99919 * 188.37100 * 11 9 7 14 14 H 1.48497 * 109.47182 * 89.99857 * 13 11 9 15 15 H 1.48504 * 109.47187 * 210.00206 * 13 11 9 16 16 H 1.48507 * 109.46764 * 330.00026 * 13 11 9 17 17 C 1.50703 * 109.47112 * 193.96010 * 7 5 2 18 18 C 1.38237 * 120.00059 * 152.35686 * 17 7 5 19 19 C 1.38235 * 119.99735 * 179.78576 * 18 17 7 20 20 C 1.38235 * 120.00112 * 0.44312 * 19 18 17 21 21 C 1.38238 * 119.99969 * 359.81129 * 20 19 18 22 22 C 1.38232 * 119.99747 * 359.97438 * 21 20 19 23 23 H 1.08996 * 109.47330 * 299.99624 * 1 2 3 24 24 H 1.09002 * 109.46787 * 60.00175 * 1 2 3 25 25 H 1.09003 * 109.46786 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47456 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47411 * 300.00170 * 3 2 1 28 28 H 1.09003 * 109.47231 * 60.00109 * 3 2 1 29 29 H 1.09002 * 109.47516 * 307.33372 * 4 2 1 30 30 H 1.09005 * 109.47071 * 67.33818 * 4 2 1 31 31 H 1.09009 * 109.47298 * 187.33609 * 4 2 1 32 32 H 0.97004 * 120.00636 * 179.97438 * 12 11 9 33 33 H 1.07996 * 120.00043 * 359.97438 * 18 17 7 34 34 H 1.07993 * 119.99964 * 180.27306 * 19 18 17 35 35 H 1.08002 * 119.99874 * 179.82930 * 20 19 18 36 36 H 1.08004 * 119.99954 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99818 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1347 -0.8552 1.4811 6 8 3.5522 -0.9420 1.4324 7 6 1.4212 -2.5146 1.3141 8 1 0.3695 -2.4320 1.0400 9 6 2.1611 -3.2740 0.2433 10 1 1.6475 -3.5760 -0.6574 11 6 3.4925 -3.5883 0.4161 12 7 4.0736 -3.3740 1.5761 13 14 4.4708 -4.3187 -0.9978 14 1 5.0881 -3.2248 -1.7898 15 1 5.5363 -5.2015 -0.4585 16 1 3.5656 -5.1106 -1.8690 17 6 1.5426 -3.2479 2.6251 18 6 0.6304 -4.2335 2.9527 19 6 0.7444 -4.9092 4.1533 20 6 1.7651 -4.5929 5.0303 21 6 2.6742 -3.6036 4.7049 22 6 2.5628 -2.9310 3.5024 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.5735 -1.7041 -1.3173 30 1 1.7878 -0.1373 -2.1344 31 1 3.1221 -0.8363 -1.1860 32 1 5.0101 -3.5954 1.6978 33 1 -0.1695 -4.4778 2.2694 34 1 0.0344 -5.6822 4.4074 35 1 1.8525 -5.1189 5.9695 36 1 3.4714 -3.3562 5.3902 37 1 3.2727 -2.1578 3.2483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084261677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:52 Heat of formation + Delta-G solvation = -7.219597 kcal Electronic energy + Delta-G solvation = -19257.904517 eV Core-core repulsion = 16513.233460 eV Total energy + Delta-G solvation = -2744.671057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.10382 -35.47304 -34.17592 -33.46035 -30.69538 -29.71953 -27.61038 -26.69396 -26.20342 -23.16285 -21.48532 -20.39462 -19.78973 -16.66056 -16.08616 -15.47724 -15.12811 -14.55003 -14.23328 -13.76606 -13.64974 -13.37195 -12.89564 -12.70581 -12.45224 -12.02846 -11.87858 -11.51812 -11.46200 -11.20770 -11.12441 -10.90355 -10.88960 -10.63442 -10.45049 -10.18373 -10.14343 -10.03586 -9.60698 -9.54067 -8.62203 -8.26179 -7.81260 -7.48042 -6.87161 -5.85594 -4.03395 2.50265 2.60244 3.05168 3.28881 3.35799 3.36963 4.06841 4.40463 4.98405 5.20736 5.36997 5.46822 5.64591 5.81211 5.84483 5.95452 6.04650 6.05576 6.20683 6.22016 6.33056 6.40325 6.50277 6.53868 6.60670 6.64968 6.71346 6.85113 6.92175 7.09669 7.17864 7.24798 7.52319 7.67147 7.80418 7.93990 8.03277 8.23110 8.73268 9.49630 10.94918 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.010824 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.162581 B = 2586.161893 C = 3447.474817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.391 4.391 3 C -0.116 4.116 4 C -0.128 4.128 5 S 1.187 4.813 6 O -0.811 6.811 7 C -0.207 4.207 8 H 0.075 0.925 9 C -0.527 4.527 10 H 0.061 0.939 11 C 0.082 3.918 12 N -0.818 5.818 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.005 4.005 18 C -0.124 4.124 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.059 4.059 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.263 0.737 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 5.386 3.242 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.485 4.485 3 C -0.174 4.174 4 C -0.185 4.185 5 S 1.387 4.613 6 O -0.805 6.805 7 C -0.325 4.325 8 H 0.093 0.907 9 C -0.567 4.567 10 H 0.079 0.921 11 C -0.128 4.128 12 N -0.450 5.450 13 Si 0.715 3.285 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.007 4.007 18 C -0.143 4.143 19 C -0.164 4.164 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.078 4.078 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.723 5.828 4.024 9.765 hybrid contribution 1.443 -1.781 -2.784 3.606 sum -5.280 4.047 1.239 6.767 Atomic orbital electron populations 1.21505 0.92732 1.01993 1.01139 1.27138 1.01683 1.03510 1.16210 1.21459 1.00795 0.94125 1.01058 1.21843 1.01580 1.00712 0.94382 1.69774 0.93985 0.97058 1.00532 1.93136 1.24148 1.84689 1.78552 1.23977 1.02655 1.10364 0.95548 0.90656 1.20468 0.94454 1.40694 1.01054 0.92062 1.24842 0.97780 0.94924 0.95264 1.69724 1.11770 1.42466 1.21035 0.86663 0.80105 0.78887 0.82845 1.20575 1.21260 1.20129 1.19473 0.93292 0.95605 0.92363 1.20797 1.00023 0.97358 0.96116 1.20753 0.99254 1.00744 0.95649 1.20759 0.97053 0.99577 0.99186 1.20911 0.99101 0.98500 0.97654 1.21337 0.95100 1.00517 0.90888 0.92389 0.93517 0.92022 0.92894 0.93293 0.92644 0.90036 0.95388 0.92882 0.92559 0.87714 0.88116 0.88272 0.88019 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.30 37.16 0.31 -1.34 16 2 C -0.39 -6.87 0.94 -90.62 -0.08 -6.95 16 3 C -0.12 -1.82 8.48 37.16 0.31 -1.51 16 4 C -0.13 -2.57 7.51 37.16 0.28 -2.29 16 5 S 1.19 23.87 10.41 -107.50 -1.12 22.75 16 6 O -0.81 -20.94 13.49 -35.23 -0.48 -21.42 16 7 C -0.21 -4.57 2.40 -29.04 -0.07 -4.64 16 8 H 0.08 1.48 6.31 -51.92 -0.33 1.15 16 9 C -0.53 -13.49 6.10 -34.44 -0.21 -13.70 16 10 H 0.06 1.58 7.19 -52.49 -0.38 1.21 16 11 C 0.08 2.23 4.58 -17.82 -0.08 2.15 16 12 N -0.82 -22.79 7.11 55.43 0.39 -22.39 16 13 Si 0.89 22.15 29.55 -169.99 -5.02 17.13 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.00 -0.11 4.43 -104.62 -0.46 -0.57 16 18 C -0.12 -2.55 9.71 -39.58 -0.38 -2.93 16 19 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 20 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 21 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 22 C -0.06 -1.34 6.65 -39.59 -0.26 -1.60 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.72 5.56 -51.93 -0.29 1.44 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 1.24 7.92 -51.92 -0.41 0.83 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.14 3.40 4.78 -52.49 -0.25 3.15 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -31.06 298.60 -8.92 -39.98 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.35 Total: 2.49 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: -1.85 Total: -43.03 kcal Atomic # 7 Polarization: -22.79 SS G_CDS: 0.39 Total: -22.39 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.48 Total: -21.42 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 23.87 SS G_CDS: -1.12 Total: 22.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.06 -8.92 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084261677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.756 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds