Wall clock time and date at job start Mon Mar 30 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 C 1.53000 * 109.47230 * 239.99856 * 2 1 3 5 5 S 1.81405 * 109.47356 * 120.00144 * 2 1 3 6 6 O 1.42098 * 109.47361 * 175.73899 * 5 2 1 7 7 C 1.81399 * 102.99855 * 59.35003 * 5 2 1 8 8 H 1.09001 * 109.47374 * 313.95852 * 7 5 2 9 9 C 1.50692 * 109.47241 * 73.95729 * 7 5 2 10 10 H 1.07996 * 120.00444 * 244.38415 * 9 7 5 11 11 C 1.37883 * 119.99582 * 64.65927 * 9 7 5 12 12 N 1.31507 * 120.00438 * 8.37198 * 11 9 7 13 13 Si 1.86806 * 119.99919 * 188.37100 * 11 9 7 14 14 H 1.48497 * 109.47182 * 89.99857 * 13 11 9 15 15 H 1.48504 * 109.47187 * 210.00206 * 13 11 9 16 16 H 1.48507 * 109.46764 * 330.00026 * 13 11 9 17 17 C 1.50703 * 109.47112 * 193.96010 * 7 5 2 18 18 C 1.38237 * 120.00059 * 152.35686 * 17 7 5 19 19 C 1.38235 * 119.99735 * 179.78576 * 18 17 7 20 20 C 1.38235 * 120.00112 * 0.44312 * 19 18 17 21 21 C 1.38238 * 119.99969 * 359.81129 * 20 19 18 22 22 C 1.38232 * 119.99747 * 359.97438 * 21 20 19 23 23 H 1.08996 * 109.47330 * 299.99624 * 1 2 3 24 24 H 1.09002 * 109.46787 * 60.00175 * 1 2 3 25 25 H 1.09003 * 109.46786 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47456 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47411 * 300.00170 * 3 2 1 28 28 H 1.09003 * 109.47231 * 60.00109 * 3 2 1 29 29 H 1.09002 * 109.47516 * 307.33372 * 4 2 1 30 30 H 1.09005 * 109.47071 * 67.33818 * 4 2 1 31 31 H 1.09009 * 109.47298 * 187.33609 * 4 2 1 32 32 H 0.97004 * 120.00636 * 179.97438 * 12 11 9 33 33 H 1.07996 * 120.00043 * 359.97438 * 18 17 7 34 34 H 1.07993 * 119.99964 * 180.27306 * 19 18 17 35 35 H 1.08002 * 119.99874 * 179.82930 * 20 19 18 36 36 H 1.08004 * 119.99954 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99818 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1347 -0.8552 1.4811 6 8 3.5522 -0.9420 1.4324 7 6 1.4212 -2.5146 1.3141 8 1 0.3695 -2.4320 1.0400 9 6 2.1611 -3.2740 0.2433 10 1 1.6475 -3.5760 -0.6574 11 6 3.4925 -3.5883 0.4161 12 7 4.0736 -3.3740 1.5761 13 14 4.4708 -4.3187 -0.9978 14 1 5.0881 -3.2248 -1.7898 15 1 5.5363 -5.2015 -0.4585 16 1 3.5656 -5.1106 -1.8690 17 6 1.5426 -3.2479 2.6251 18 6 0.6304 -4.2335 2.9527 19 6 0.7444 -4.9092 4.1533 20 6 1.7651 -4.5929 5.0303 21 6 2.6742 -3.6036 4.7049 22 6 2.5628 -2.9310 3.5024 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.5735 -1.7041 -1.3173 30 1 1.7878 -0.1373 -2.1344 31 1 3.1221 -0.8363 -1.1860 32 1 5.0101 -3.5954 1.6978 33 1 -0.1695 -4.4778 2.2694 34 1 0.0344 -5.6822 4.4074 35 1 1.8525 -5.1189 5.9695 36 1 3.4714 -3.3562 5.3902 37 1 3.2727 -2.1578 3.2483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084261677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:51 Heat of formation + Delta-G solvation = -25.042468 kcal Electronic energy + Delta-G solvation = -19258.677375 eV Core-core repulsion = 16513.233460 eV Total energy + Delta-G solvation = -2745.443915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68235 -36.90356 -35.99979 -35.29126 -32.47563 -31.28638 -29.28176 -27.97511 -27.74388 -25.00196 -23.05525 -21.98090 -21.28376 -18.58083 -17.63077 -17.13923 -16.90559 -16.23673 -15.81027 -15.36007 -15.14862 -14.90521 -14.62063 -14.37165 -13.99388 -13.64513 -13.25361 -13.12020 -12.95960 -12.93714 -12.83086 -12.70017 -12.48576 -12.36137 -12.09280 -11.75812 -11.63815 -11.61144 -11.39210 -11.24929 -10.56359 -10.01794 -9.40991 -9.13539 -8.58032 -7.82756 -6.05656 0.91750 1.03552 1.24025 1.28806 1.32741 1.48168 2.36003 2.44549 3.30717 3.38881 3.68550 4.10578 4.19198 4.42240 4.44299 4.50635 4.58727 4.73560 4.77546 4.91917 4.94985 4.96938 5.07728 5.11171 5.15710 5.24970 5.26948 5.31252 5.52144 5.53236 5.59304 5.67458 5.70522 5.96795 6.06592 6.17368 6.35208 6.57704 6.74508 7.45939 8.87615 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.010824 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.162581 B = 2586.161893 C = 3447.474817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.386 4.386 3 C -0.118 4.118 4 C -0.124 4.124 5 S 1.233 4.767 6 O -0.874 6.874 7 C -0.219 4.219 8 H 0.098 0.902 9 C -0.528 4.528 10 H 0.052 0.948 11 C 0.042 3.958 12 N -0.831 5.831 13 Si 0.915 3.085 14 H -0.294 1.294 15 H -0.289 1.289 16 H -0.266 1.266 17 C -0.026 4.026 18 C -0.135 4.135 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.078 4.078 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.008 0.992 32 H 0.249 0.751 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 5.735 3.933 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.484 4.484 3 C -0.176 4.176 4 C -0.182 4.182 5 S 1.435 4.565 6 O -0.869 6.869 7 C -0.337 4.337 8 H 0.116 0.884 9 C -0.567 4.567 10 H 0.070 0.930 11 C -0.165 4.165 12 N -0.464 5.464 13 Si 0.743 3.257 14 H -0.221 1.221 15 H -0.216 1.216 16 H -0.190 1.190 17 C -0.028 4.028 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.173 4.173 22 C -0.097 4.097 23 H 0.111 0.889 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.354 6.135 4.726 12.144 hybrid contribution 2.161 -1.818 -3.036 4.146 sum -7.194 4.317 1.690 8.558 Atomic orbital electron populations 1.21566 0.89283 1.02651 1.03876 1.27089 1.04439 1.03953 1.12907 1.21510 0.99124 0.93079 1.03855 1.21785 0.98543 1.00912 0.96963 1.68830 0.91600 0.94714 1.01313 1.93046 1.27645 1.85038 1.81202 1.24124 1.03692 1.11015 0.94856 0.88407 1.20645 0.94334 1.39976 1.01746 0.92954 1.25320 0.98935 0.96034 0.96218 1.69931 1.10728 1.44082 1.21695 0.86218 0.79567 0.78055 0.81815 1.22105 1.21554 1.19034 1.19534 0.94119 0.96664 0.92476 1.21067 1.00082 0.97062 0.97237 1.21163 0.99554 1.00688 0.94660 1.21144 0.96013 0.98600 1.00410 1.21168 1.00046 0.98836 0.97258 1.21212 0.95218 1.00967 0.92322 0.88915 0.91628 0.92463 0.95680 0.91058 0.89350 0.91389 0.93062 0.97292 0.94098 0.86444 0.84693 0.84875 0.86730 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.30 71.98 0.60 -2.26 16 2 C -0.39 -12.92 0.94 -10.80 -0.01 -12.93 16 3 C -0.12 -3.42 8.48 71.98 0.61 -2.81 16 4 C -0.12 -4.99 7.51 71.98 0.54 -4.44 16 5 S 1.23 49.63 10.41 -56.49 -0.59 49.04 16 6 O -0.87 -46.95 13.49 -148.98 -2.01 -48.96 16 7 C -0.22 -9.58 2.40 29.10 0.07 -9.51 16 8 H 0.10 3.70 6.31 -2.39 -0.02 3.69 16 9 C -0.53 -27.38 6.10 25.60 0.16 -27.22 16 10 H 0.05 2.74 7.19 -2.91 -0.02 2.72 16 11 C 0.04 2.35 4.58 84.66 0.39 2.74 16 12 N -0.83 -48.05 7.11 21.45 0.15 -47.89 16 13 Si 0.92 46.59 29.55 68.60 2.03 48.61 16 14 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 15 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 16 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 17 C -0.03 -1.14 4.43 -19.86 -0.09 -1.23 16 18 C -0.14 -5.33 9.71 22.27 0.22 -5.11 16 19 C -0.14 -4.94 10.05 22.27 0.22 -4.72 16 20 C -0.14 -5.01 10.05 22.27 0.22 -4.78 16 21 C -0.15 -6.18 10.05 22.27 0.22 -5.95 16 22 C -0.08 -3.55 6.65 22.27 0.15 -3.40 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.48 6.35 -2.39 -0.02 1.47 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 2.87 5.56 -2.39 -0.01 2.86 16 30 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 31 H 0.01 0.39 7.92 -2.38 -0.02 0.37 16 32 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.11 5.77 4.78 -2.91 -0.01 5.76 16 Total: -1.00 -69.93 298.60 3.92 -66.00 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.04 Total: 14.83 kcal Atomic # 6 Polarization: -84.94 SS G_CDS: 3.30 Total: -81.64 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.15 Total: -47.89 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -2.01 Total: -48.96 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -0.59 Total: 49.04 kcal Total: -69.93 3.92 -66.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084261677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.959 kcal (2) G-P(sol) polarization free energy of solvation -69.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds