Wall clock time and date at job start Mon Mar 30 2020 06:47:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52999 * 109.46917 * 2 1
4 4 C 1.52998 * 109.46933 * 240.00328 * 2 1 3
5 5 C 1.50693 * 109.47218 * 120.00189 * 2 1 3
6 6 C 1.38233 * 120.00207 * 59.99579 * 5 2 1
7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 2
8 8 C 1.38235 * 120.00220 * 0.28719 * 7 6 5
9 9 S 1.76202 * 120.00249 * 179.97438 * 8 7 6
10 10 O 1.42103 * 102.99798 * 336.14171 * 9 8 7
11 11 C 1.81393 * 103.00197 * 89.99703 * 9 8 7
12 12 C 1.50704 * 109.47454 * 180.02562 * 11 9 8
13 13 H 1.07998 * 119.99233 * 359.97438 * 12 11 9
14 14 C 1.37874 * 120.00132 * 180.02562 * 12 11 9
15 15 N 1.31506 * 120.00114 * 359.97438 * 14 12 11
16 16 Si 1.86798 * 119.99774 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.47162 * 359.97438 * 16 14 12
18 18 H 1.48501 * 109.47356 * 119.99794 * 16 14 12
19 19 H 1.48501 * 109.47116 * 239.99835 * 16 14 12
20 20 C 1.38238 * 119.99712 * 359.97124 * 8 7 6
21 21 C 1.38233 * 120.00012 * 359.96176 * 20 8 7
22 22 H 1.08995 * 109.47325 * 299.99651 * 1 2 3
23 23 H 1.09003 * 109.47092 * 60.00098 * 1 2 3
24 24 H 1.09001 * 109.46873 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47054 * 180.02562 * 3 2 1
26 26 H 1.09003 * 109.47160 * 299.99861 * 3 2 1
27 27 H 1.09001 * 109.47089 * 60.00424 * 3 2 1
28 28 H 1.08994 * 109.47122 * 299.99328 * 4 2 1
29 29 H 1.08990 * 109.47488 * 60.00041 * 4 2 1
30 30 H 1.09001 * 109.46885 * 179.97438 * 4 2 1
31 31 H 1.08002 * 120.00157 * 0.02562 * 6 5 2
32 32 H 1.07999 * 120.00009 * 180.25939 * 7 6 5
33 33 H 1.09008 * 109.47248 * 300.00312 * 11 9 8
34 34 H 1.08997 * 109.47616 * 59.99698 * 11 9 8
35 35 H 0.97000 * 120.00485 * 180.02562 * 15 14 12
36 36 H 1.08002 * 119.99672 * 179.97438 * 20 8 7
37 37 H 1.08004 * 119.99493 * 180.02562 * 21 20 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0324 -0.7104 1.2304
6 6 1.6984 -2.0338 1.4492
7 6 2.1639 -2.6871 2.5749
8 6 2.9585 -2.0153 3.4850
9 16 3.5514 -2.8479 4.9203
10 8 2.6072 -3.8954 5.0950
11 6 5.1314 -3.5444 4.3647
12 6 5.7736 -4.3009 5.4989
13 1 5.2806 -4.3566 6.4582
14 6 6.9908 -4.9208 5.3122
15 7 7.5913 -4.8525 4.1443
16 14 7.7864 -5.8591 6.7180
17 1 6.9145 -5.7862 7.9179
18 1 7.9698 -7.2792 6.3243
19 1 9.1078 -5.2573 7.0296
20 6 3.2881 -0.6903 3.2689
21 6 2.8237 -0.0374 2.1424
22 1 -0.3634 0.5137 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 3.1300 1.4425 -0.0005
26 1 1.6766 1.9563 -0.8900
27 1 1.6767 1.9563 0.8900
28 1 1.6767 -1.7488 -1.2493
29 1 1.6767 -0.2074 -2.1392
30 1 3.1300 -0.7208 -1.2495
31 1 1.0778 -2.5588 0.7381
32 1 1.9064 -3.7223 2.7437
33 1 4.9559 -4.2225 3.5294
34 1 5.7917 -2.7382 4.0453
35 1 8.4475 -5.2890 4.0128
36 1 3.9086 -0.1653 3.9801
37 1 3.0816 0.9977 1.9734
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084262954.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:47:09
Heat of formation + Delta-G solvation = -36.387049 kcal
Electronic energy + Delta-G solvation = -17623.943883 eV
Core-core repulsion = 14878.008029 eV
Total energy + Delta-G solvation = -2745.935853 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.108 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.63829 -36.22939 -34.65973 -33.11016 -30.87372 -29.79238 -28.54544 -27.45918
-27.37220 -23.38404 -22.74279 -22.10354 -19.22166 -17.74649 -16.43267 -16.11350
-15.10942 -14.99215 -14.66438 -14.38040 -14.35125 -13.66971 -13.52365 -13.26299
-12.71454 -12.59240 -12.56463 -12.15794 -12.03521 -11.98784 -11.81245 -11.38898
-11.21071 -11.07488 -10.93480 -10.78884 -10.61289 -10.47320 -10.27872 -9.56015
-9.03778 -8.64145 -8.60658 -8.53375 -7.27211 -6.16284 -4.23658 1.35396
1.69540 2.79372 3.25345 3.33081 3.38641 3.73674 4.10619 4.35556
4.52973 4.66182 4.85459 4.89218 5.19267 5.20446 5.24934 5.25739
5.43221 5.47904 5.62557 5.64927 5.72179 5.73613 5.84588 5.88578
5.94102 6.12986 6.16300 6.17994 6.31340 6.60201 6.73254 6.78005
7.09585 7.19575 7.25671 7.68416 8.02393 8.80943 9.41197 10.95425
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.034842 B = 0.004262 C = 0.004092
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 803.425777 B = 6567.490597 C = 6840.884965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.032 4.032
3 C -0.143 4.143
4 C -0.139 4.139
5 C -0.053 4.053
6 C -0.134 4.134
7 C -0.055 4.055
8 C -0.444 4.444
9 S 1.273 4.727
10 O -0.875 6.875
11 C -0.256 4.256
12 C -0.516 4.516
13 H 0.065 0.935
14 C 0.068 3.932
15 N -0.885 5.885
16 Si 0.899 3.101
17 H -0.268 1.268
18 H -0.282 1.282
19 H -0.280 1.280
20 C -0.047 4.047
21 C -0.142 4.142
22 H 0.056 0.944
23 H 0.056 0.944
24 H 0.056 0.944
25 H 0.060 0.940
26 H 0.055 0.945
27 H 0.059 0.941
28 H 0.057 0.943
29 H 0.056 0.944
30 H 0.058 0.942
31 H 0.115 0.885
32 H 0.123 0.877
33 H 0.040 0.960
34 H 0.070 0.930
35 H 0.263 0.737
36 H 0.133 0.867
37 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.449 14.108 -6.869 18.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.032 4.032
3 C -0.200 4.200
4 C -0.196 4.196
5 C -0.053 4.053
6 C -0.153 4.153
7 C -0.074 4.074
8 C -0.538 4.538
9 S 1.474 4.526
10 O -0.871 6.871
11 C -0.396 4.396
12 C -0.556 4.556
13 H 0.083 0.917
14 C -0.136 4.136
15 N -0.523 5.523
16 Si 0.726 3.274
17 H -0.192 1.192
18 H -0.208 1.208
19 H -0.206 1.206
20 C -0.067 4.067
21 C -0.161 4.161
22 H 0.075 0.925
23 H 0.075 0.925
24 H 0.075 0.925
25 H 0.079 0.921
26 H 0.074 0.926
27 H 0.078 0.922
28 H 0.076 0.924
29 H 0.075 0.925
30 H 0.077 0.923
31 H 0.133 0.867
32 H 0.141 0.859
33 H 0.059 0.941
34 H 0.088 0.912
35 H 0.073 0.927
36 H 0.151 0.849
37 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -9.793 14.001 -6.103 18.143
hybrid contribution 0.358 -1.996 -1.388 2.457
sum -9.435 12.005 -7.491 17.007
Atomic orbital electron populations
1.21882 0.93811 1.02081 1.01695 1.19531 0.95628 0.95107 0.92927
1.21956 1.01391 0.94889 1.01766 1.21888 1.01488 1.00236 0.96000
1.19844 0.96508 0.93863 0.95125 1.20980 1.01651 0.94571 0.98118
1.21117 0.94216 0.99641 0.92406 1.28301 1.06596 1.03203 1.15748
1.68778 0.87470 1.02494 0.93828 1.92987 1.56311 1.59226 1.78604
1.24972 1.06798 1.04118 1.03701 1.20496 1.04774 1.33927 0.96381
0.91727 1.24982 0.96840 0.95800 0.95994 1.69983 1.16377 1.43230
1.22696 0.86413 0.79256 0.79600 0.82130 1.19228 1.20827 1.20564
1.20861 0.96451 0.92873 0.96467 1.21214 0.99640 1.00141 0.95089
0.92462 0.92482 0.92465 0.92087 0.92569 0.92173 0.92439 0.92476
0.92320 0.86661 0.85949 0.94135 0.91167 0.92695 0.84898 0.85614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.31 8.29 37.16 0.31 -1.01 16
2 C -0.03 -0.34 0.85 -155.66 -0.13 -0.47 16
3 C -0.14 -1.28 7.13 37.16 0.26 -1.01 16
4 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16
5 C -0.05 -0.73 4.76 -104.63 -0.50 -1.23 16
6 C -0.13 -2.09 8.71 -39.58 -0.34 -2.44 16
7 C -0.05 -1.03 9.44 -39.58 -0.37 -1.40 16
8 C -0.44 -8.05 5.61 -39.58 -0.22 -8.27 16
9 S 1.27 25.55 13.47 -107.50 -1.45 24.10 16
10 O -0.88 -22.37 16.90 -35.23 -0.60 -22.97 16
11 C -0.26 -6.43 5.64 36.01 0.20 -6.23 16
12 C -0.52 -14.33 9.13 -34.44 -0.31 -14.64 16
13 H 0.06 1.72 7.71 -52.49 -0.40 1.32 16
14 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16
15 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16
16 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16
17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16
19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
20 C -0.05 -0.70 9.75 -39.58 -0.39 -1.09 16
21 C -0.14 -1.91 8.98 -39.58 -0.36 -2.27 16
22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
24 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16
25 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16
26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16
28 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16
29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.12 1.58 7.10 -52.49 -0.37 1.21 16
32 H 0.12 2.51 7.45 -52.49 -0.39 2.11 16
33 H 0.04 1.14 8.14 -51.92 -0.42 0.72 16
34 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16
35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16
37 H 0.13 1.34 5.90 -52.48 -0.31 1.03 16
LS Contribution 317.89 15.07 4.79 4.79
Total: -1.00 -35.05 317.89 -8.72 -43.77
By element:
Atomic # 1 Polarization: 4.32 SS G_CDS: -5.54 Total: -1.23 kcal
Atomic # 6 Polarization: -37.70 SS G_CDS: -1.64 Total: -39.34 kcal
Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.36 kcal
Atomic # 8 Polarization: -22.37 SS G_CDS: -0.60 Total: -22.97 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal
Atomic # 16 Polarization: 25.55 SS G_CDS: -1.45 Total: 24.10 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -35.05 -8.72 -43.77 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084262954.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.386 kcal
(2) G-P(sol) polarization free energy of solvation -35.052 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds