Wall clock time and date at job start Mon Mar 30 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 C 1.52998 * 109.46933 * 240.00328 * 2 1 3 5 5 C 1.50693 * 109.47218 * 120.00189 * 2 1 3 6 6 C 1.38233 * 120.00207 * 59.99579 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 2 8 8 C 1.38235 * 120.00220 * 0.28719 * 7 6 5 9 9 S 1.76202 * 120.00249 * 179.97438 * 8 7 6 10 10 O 1.42103 * 102.99798 * 336.14171 * 9 8 7 11 11 C 1.81393 * 103.00197 * 89.99703 * 9 8 7 12 12 C 1.50704 * 109.47454 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99233 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00132 * 180.02562 * 12 11 9 15 15 N 1.31506 * 120.00114 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99774 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47356 * 119.99794 * 16 14 12 19 19 H 1.48501 * 109.47116 * 239.99835 * 16 14 12 20 20 C 1.38238 * 119.99712 * 359.97124 * 8 7 6 21 21 C 1.38233 * 120.00012 * 359.96176 * 20 8 7 22 22 H 1.08995 * 109.47325 * 299.99651 * 1 2 3 23 23 H 1.09003 * 109.47092 * 60.00098 * 1 2 3 24 24 H 1.09001 * 109.46873 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47054 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47160 * 299.99861 * 3 2 1 27 27 H 1.09001 * 109.47089 * 60.00424 * 3 2 1 28 28 H 1.08994 * 109.47122 * 299.99328 * 4 2 1 29 29 H 1.08990 * 109.47488 * 60.00041 * 4 2 1 30 30 H 1.09001 * 109.46885 * 179.97438 * 4 2 1 31 31 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 32 32 H 1.07999 * 120.00009 * 180.25939 * 7 6 5 33 33 H 1.09008 * 109.47248 * 300.00312 * 11 9 8 34 34 H 1.08997 * 109.47616 * 59.99698 * 11 9 8 35 35 H 0.97000 * 120.00485 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.99672 * 179.97438 * 20 8 7 37 37 H 1.08004 * 119.99493 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6984 -2.0338 1.4492 7 6 2.1639 -2.6871 2.5749 8 6 2.9585 -2.0153 3.4850 9 16 3.5514 -2.8479 4.9203 10 8 2.6072 -3.8954 5.0950 11 6 5.1314 -3.5444 4.3647 12 6 5.7736 -4.3009 5.4989 13 1 5.2806 -4.3566 6.4582 14 6 6.9908 -4.9208 5.3122 15 7 7.5913 -4.8525 4.1443 16 14 7.7864 -5.8591 6.7180 17 1 6.9145 -5.7862 7.9179 18 1 7.9698 -7.2792 6.3243 19 1 9.1078 -5.2573 7.0296 20 6 3.2881 -0.6903 3.2689 21 6 2.8237 -0.0374 2.1424 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7488 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 1.0778 -2.5588 0.7381 32 1 1.9064 -3.7223 2.7437 33 1 4.9559 -4.2225 3.5294 34 1 5.7917 -2.7382 4.0453 35 1 8.4475 -5.2890 4.0128 36 1 3.9086 -0.1653 3.9801 37 1 3.0816 0.9977 1.9734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084262954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:08 Heat of formation + Delta-G solvation = -58.764793 kcal Electronic energy + Delta-G solvation = -17624.914254 eV Core-core repulsion = 14878.008029 eV Total energy + Delta-G solvation = -2746.906225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74683 -37.25166 -36.58237 -35.23623 -32.08514 -31.01900 -30.61079 -28.22168 -28.13802 -25.31573 -24.09596 -23.31881 -20.20526 -19.25729 -18.49201 -17.54171 -16.73933 -16.31367 -16.13943 -15.57037 -15.36860 -15.11786 -14.69537 -14.58143 -14.34977 -14.23392 -13.75886 -13.64869 -13.20636 -13.02166 -12.87421 -12.75456 -12.58736 -12.55343 -12.40356 -12.19031 -11.86633 -11.70408 -11.60704 -11.42185 -10.81141 -10.69873 -9.90926 -9.87661 -9.08009 -8.29975 -6.45521 0.01981 0.44435 1.19912 1.39399 1.41011 1.55143 2.13763 2.37257 2.73548 3.01582 3.19323 3.60860 3.75971 4.06138 4.10363 4.12920 4.35948 4.48238 4.56985 4.75439 4.80515 4.87954 4.89272 4.96539 5.01873 5.02620 5.03326 5.10578 5.12164 5.20214 5.35248 5.41147 5.42429 5.47341 5.53942 5.65608 5.91824 6.04473 6.69213 7.24207 8.82929 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034842 B = 0.004262 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.425777 B = 6567.490597 C = 6840.884965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.044 4.044 6 C -0.141 4.141 7 C -0.087 4.087 8 C -0.473 4.473 9 S 1.361 4.639 10 O -0.934 6.934 11 C -0.271 4.271 12 C -0.540 4.540 13 H 0.070 0.930 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.968 3.032 17 H -0.257 1.257 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.042 4.042 21 C -0.138 4.138 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.127 0.873 32 H 0.088 0.912 33 H -0.009 1.009 34 H 0.071 0.929 35 H 0.267 0.733 36 H 0.173 0.827 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 16.957 -7.091 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 C -0.200 4.200 4 C -0.197 4.197 5 C -0.044 4.044 6 C -0.160 4.160 7 C -0.106 4.106 8 C -0.570 4.570 9 S 1.563 4.437 10 O -0.930 6.930 11 C -0.409 4.409 12 C -0.578 4.578 13 H 0.089 0.911 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.791 3.209 17 H -0.180 1.180 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.061 4.061 21 C -0.157 4.157 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.010 0.990 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.190 0.810 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.984 16.831 -6.297 20.558 hybrid contribution 0.297 -2.743 -1.508 3.144 sum -9.687 14.088 -7.806 18.795 Atomic orbital electron populations 1.21884 0.92854 1.01901 1.02764 1.19648 0.96360 0.96043 0.91197 1.21972 1.01471 0.93370 1.03165 1.21908 1.00928 1.00053 0.96843 1.20348 0.94956 0.92946 0.96170 1.21119 1.01875 0.95781 0.97210 1.21054 0.96257 0.98680 0.94591 1.27888 1.08698 1.04875 1.15585 1.67889 0.83339 0.99023 0.93424 1.92850 1.57996 1.61128 1.81006 1.25125 1.11025 1.03232 1.01490 1.20980 1.05275 1.34293 0.97283 0.91145 1.25984 0.97553 0.96734 0.98727 1.70105 1.16963 1.44376 1.24908 0.85356 0.78891 0.77712 0.78953 1.18025 1.21037 1.18786 1.21367 0.95785 0.91298 0.97618 1.21712 0.98281 1.01790 0.93909 0.92471 0.90363 0.93358 0.92000 0.90783 0.91331 0.93412 0.90222 0.93209 0.85484 0.89353 0.99007 0.91083 0.92413 0.80998 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.29 71.98 0.60 -1.62 16 2 C -0.03 -0.59 0.85 -52.93 -0.05 -0.63 16 3 C -0.14 -1.92 7.13 71.98 0.51 -1.40 16 4 C -0.14 -2.53 8.29 71.98 0.60 -1.93 16 5 C -0.04 -1.11 4.76 -19.87 -0.09 -1.21 16 6 C -0.14 -4.40 8.71 22.27 0.19 -4.21 16 7 C -0.09 -3.40 9.44 22.27 0.21 -3.19 16 8 C -0.47 -17.33 5.61 22.27 0.12 -17.20 16 9 S 1.36 56.21 13.47 -56.49 -0.76 55.45 16 10 O -0.93 -49.86 16.90 -148.98 -2.52 -52.37 16 11 C -0.27 -14.28 5.64 71.24 0.40 -13.88 16 12 C -0.54 -30.78 9.13 25.60 0.23 -30.54 16 13 H 0.07 3.82 7.71 -2.91 -0.02 3.80 16 14 C 0.01 0.60 5.46 84.66 0.46 1.06 16 15 N -0.92 -56.07 13.29 21.44 0.28 -55.78 16 16 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 C -0.04 -1.14 9.75 22.27 0.22 -0.92 16 21 C -0.14 -3.27 8.98 22.27 0.20 -3.07 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.86 7.39 -2.39 -0.02 0.85 16 25 H 0.06 0.84 7.52 -2.39 -0.02 0.82 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.83 7.50 -2.39 -0.02 0.81 16 28 H 0.05 0.94 7.39 -2.39 -0.02 0.92 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.13 3.54 7.10 -2.91 -0.02 3.52 16 32 H 0.09 3.97 7.45 -2.91 -0.02 3.95 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.07 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.17 2.65 5.90 -2.91 -0.02 2.64 16 Total: -1.00 -79.72 317.89 3.68 -76.04 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.04 Total: 9.49 kcal Atomic # 6 Polarization: -82.34 SS G_CDS: 3.61 Total: -78.73 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -2.52 Total: -52.37 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 56.21 SS G_CDS: -0.76 Total: 55.45 kcal Total: -79.72 3.68 -76.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084262954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.278 kcal (2) G-P(sol) polarization free energy of solvation -79.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds