Wall clock time and date at job start Mon Mar 30 2020 06:47:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52999 * 109.46917 * 2 1
4 4 C 1.52998 * 109.46933 * 240.00328 * 2 1 3
5 5 C 1.50693 * 109.47218 * 120.00189 * 2 1 3
6 6 C 1.38233 * 120.00207 * 59.99579 * 5 2 1
7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 2
8 8 C 1.38235 * 120.00220 * 0.28719 * 7 6 5
9 9 S 1.76202 * 120.00249 * 179.97438 * 8 7 6
10 10 O 1.42103 * 102.99798 * 336.14171 * 9 8 7
11 11 C 1.81393 * 103.00197 * 89.99703 * 9 8 7
12 12 C 1.50704 * 109.47454 * 180.02562 * 11 9 8
13 13 H 1.07998 * 119.99233 * 359.97438 * 12 11 9
14 14 C 1.37874 * 120.00132 * 180.02562 * 12 11 9
15 15 N 1.31506 * 120.00114 * 359.97438 * 14 12 11
16 16 Si 1.86798 * 119.99774 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.47162 * 359.97438 * 16 14 12
18 18 H 1.48501 * 109.47356 * 119.99794 * 16 14 12
19 19 H 1.48501 * 109.47116 * 239.99835 * 16 14 12
20 20 C 1.38238 * 119.99712 * 359.97124 * 8 7 6
21 21 C 1.38233 * 120.00012 * 359.96176 * 20 8 7
22 22 H 1.08995 * 109.47325 * 299.99651 * 1 2 3
23 23 H 1.09003 * 109.47092 * 60.00098 * 1 2 3
24 24 H 1.09001 * 109.46873 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47054 * 180.02562 * 3 2 1
26 26 H 1.09003 * 109.47160 * 299.99861 * 3 2 1
27 27 H 1.09001 * 109.47089 * 60.00424 * 3 2 1
28 28 H 1.08994 * 109.47122 * 299.99328 * 4 2 1
29 29 H 1.08990 * 109.47488 * 60.00041 * 4 2 1
30 30 H 1.09001 * 109.46885 * 179.97438 * 4 2 1
31 31 H 1.08002 * 120.00157 * 0.02562 * 6 5 2
32 32 H 1.07999 * 120.00009 * 180.25939 * 7 6 5
33 33 H 1.09008 * 109.47248 * 300.00312 * 11 9 8
34 34 H 1.08997 * 109.47616 * 59.99698 * 11 9 8
35 35 H 0.97000 * 120.00485 * 180.02562 * 15 14 12
36 36 H 1.08002 * 119.99672 * 179.97438 * 20 8 7
37 37 H 1.08004 * 119.99493 * 180.02562 * 21 20 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0324 -0.7104 1.2304
6 6 1.6984 -2.0338 1.4492
7 6 2.1639 -2.6871 2.5749
8 6 2.9585 -2.0153 3.4850
9 16 3.5514 -2.8479 4.9203
10 8 2.6072 -3.8954 5.0950
11 6 5.1314 -3.5444 4.3647
12 6 5.7736 -4.3009 5.4989
13 1 5.2806 -4.3566 6.4582
14 6 6.9908 -4.9208 5.3122
15 7 7.5913 -4.8525 4.1443
16 14 7.7864 -5.8591 6.7180
17 1 6.9145 -5.7862 7.9179
18 1 7.9698 -7.2792 6.3243
19 1 9.1078 -5.2573 7.0296
20 6 3.2881 -0.6903 3.2689
21 6 2.8237 -0.0374 2.1424
22 1 -0.3634 0.5137 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 3.1300 1.4425 -0.0005
26 1 1.6766 1.9563 -0.8900
27 1 1.6767 1.9563 0.8900
28 1 1.6767 -1.7488 -1.2493
29 1 1.6767 -0.2074 -2.1392
30 1 3.1300 -0.7208 -1.2495
31 1 1.0778 -2.5588 0.7381
32 1 1.9064 -3.7223 2.7437
33 1 4.9559 -4.2225 3.5294
34 1 5.7917 -2.7382 4.0453
35 1 8.4475 -5.2890 4.0128
36 1 3.9086 -0.1653 3.9801
37 1 3.0816 0.9977 1.9734
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084262954.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:47:08
Heat of formation + Delta-G solvation = -58.764793 kcal
Electronic energy + Delta-G solvation = -17624.914254 eV
Core-core repulsion = 14878.008029 eV
Total energy + Delta-G solvation = -2746.906225 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.108 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.74683 -37.25166 -36.58237 -35.23623 -32.08514 -31.01900 -30.61079 -28.22168
-28.13802 -25.31573 -24.09596 -23.31881 -20.20526 -19.25729 -18.49201 -17.54171
-16.73933 -16.31367 -16.13943 -15.57037 -15.36860 -15.11786 -14.69537 -14.58143
-14.34977 -14.23392 -13.75886 -13.64869 -13.20636 -13.02166 -12.87421 -12.75456
-12.58736 -12.55343 -12.40356 -12.19031 -11.86633 -11.70408 -11.60704 -11.42185
-10.81141 -10.69873 -9.90926 -9.87661 -9.08009 -8.29975 -6.45521 0.01981
0.44435 1.19912 1.39399 1.41011 1.55143 2.13763 2.37257 2.73548
3.01582 3.19323 3.60860 3.75971 4.06138 4.10363 4.12920 4.35948
4.48238 4.56985 4.75439 4.80515 4.87954 4.89272 4.96539 5.01873
5.02620 5.03326 5.10578 5.12164 5.20214 5.35248 5.41147 5.42429
5.47341 5.53942 5.65608 5.91824 6.04473 6.69213 7.24207 8.82929
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.034842 B = 0.004262 C = 0.004092
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 803.425777 B = 6567.490597 C = 6840.884965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.032 4.032
3 C -0.143 4.143
4 C -0.140 4.140
5 C -0.044 4.044
6 C -0.141 4.141
7 C -0.087 4.087
8 C -0.473 4.473
9 S 1.361 4.639
10 O -0.934 6.934
11 C -0.271 4.271
12 C -0.540 4.540
13 H 0.070 0.930
14 C 0.010 3.990
15 N -0.925 5.925
16 Si 0.968 3.032
17 H -0.257 1.257
18 H -0.284 1.284
19 H -0.263 1.263
20 C -0.042 4.042
21 C -0.138 4.138
22 H 0.056 0.944
23 H 0.077 0.923
24 H 0.047 0.953
25 H 0.061 0.939
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.047 0.953
29 H 0.079 0.921
30 H 0.049 0.951
31 H 0.127 0.873
32 H 0.088 0.912
33 H -0.009 1.009
34 H 0.071 0.929
35 H 0.267 0.733
36 H 0.173 0.827
37 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.662 16.957 -7.091 20.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.032 4.032
3 C -0.200 4.200
4 C -0.197 4.197
5 C -0.044 4.044
6 C -0.160 4.160
7 C -0.106 4.106
8 C -0.570 4.570
9 S 1.563 4.437
10 O -0.930 6.930
11 C -0.409 4.409
12 C -0.578 4.578
13 H 0.089 0.911
14 C -0.190 4.190
15 N -0.564 5.564
16 Si 0.791 3.209
17 H -0.180 1.180
18 H -0.210 1.210
19 H -0.188 1.188
20 C -0.061 4.061
21 C -0.157 4.157
22 H 0.075 0.925
23 H 0.096 0.904
24 H 0.066 0.934
25 H 0.080 0.920
26 H 0.092 0.908
27 H 0.087 0.913
28 H 0.066 0.934
29 H 0.098 0.902
30 H 0.068 0.932
31 H 0.145 0.855
32 H 0.106 0.894
33 H 0.010 0.990
34 H 0.089 0.911
35 H 0.076 0.924
36 H 0.190 0.810
37 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -9.984 16.831 -6.297 20.558
hybrid contribution 0.297 -2.743 -1.508 3.144
sum -9.687 14.088 -7.806 18.795
Atomic orbital electron populations
1.21884 0.92854 1.01901 1.02764 1.19648 0.96360 0.96043 0.91197
1.21972 1.01471 0.93370 1.03165 1.21908 1.00928 1.00053 0.96843
1.20348 0.94956 0.92946 0.96170 1.21119 1.01875 0.95781 0.97210
1.21054 0.96257 0.98680 0.94591 1.27888 1.08698 1.04875 1.15585
1.67889 0.83339 0.99023 0.93424 1.92850 1.57996 1.61128 1.81006
1.25125 1.11025 1.03232 1.01490 1.20980 1.05275 1.34293 0.97283
0.91145 1.25984 0.97553 0.96734 0.98727 1.70105 1.16963 1.44376
1.24908 0.85356 0.78891 0.77712 0.78953 1.18025 1.21037 1.18786
1.21367 0.95785 0.91298 0.97618 1.21712 0.98281 1.01790 0.93909
0.92471 0.90363 0.93358 0.92000 0.90783 0.91331 0.93412 0.90222
0.93209 0.85484 0.89353 0.99007 0.91083 0.92413 0.80998 0.81743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.21 8.29 71.98 0.60 -1.62 16
2 C -0.03 -0.59 0.85 -52.93 -0.05 -0.63 16
3 C -0.14 -1.92 7.13 71.98 0.51 -1.40 16
4 C -0.14 -2.53 8.29 71.98 0.60 -1.93 16
5 C -0.04 -1.11 4.76 -19.87 -0.09 -1.21 16
6 C -0.14 -4.40 8.71 22.27 0.19 -4.21 16
7 C -0.09 -3.40 9.44 22.27 0.21 -3.19 16
8 C -0.47 -17.33 5.61 22.27 0.12 -17.20 16
9 S 1.36 56.21 13.47 -56.49 -0.76 55.45 16
10 O -0.93 -49.86 16.90 -148.98 -2.52 -52.37 16
11 C -0.27 -14.28 5.64 71.24 0.40 -13.88 16
12 C -0.54 -30.78 9.13 25.60 0.23 -30.54 16
13 H 0.07 3.82 7.71 -2.91 -0.02 3.80 16
14 C 0.01 0.60 5.46 84.66 0.46 1.06 16
15 N -0.92 -56.07 13.29 21.44 0.28 -55.78 16
16 Si 0.97 43.88 29.54 68.60 2.03 45.91 16
17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16
18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16
20 C -0.04 -1.14 9.75 22.27 0.22 -0.92 16
21 C -0.14 -3.27 8.98 22.27 0.20 -3.07 16
22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
24 H 0.05 0.86 7.39 -2.39 -0.02 0.85 16
25 H 0.06 0.84 7.52 -2.39 -0.02 0.82 16
26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
27 H 0.07 0.83 7.50 -2.39 -0.02 0.81 16
28 H 0.05 0.94 7.39 -2.39 -0.02 0.92 16
29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.13 3.54 7.10 -2.91 -0.02 3.52 16
32 H 0.09 3.97 7.45 -2.91 -0.02 3.95 16
33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16
34 H 0.07 3.62 8.14 -2.39 -0.02 3.60 16
35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16
36 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16
37 H 0.17 2.65 5.90 -2.91 -0.02 2.64 16
Total: -1.00 -79.72 317.89 3.68 -76.04
By element:
Atomic # 1 Polarization: 8.46 SS G_CDS: 1.04 Total: 9.49 kcal
Atomic # 6 Polarization: -82.34 SS G_CDS: 3.61 Total: -78.73 kcal
Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.78 kcal
Atomic # 8 Polarization: -49.86 SS G_CDS: -2.52 Total: -52.37 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal
Atomic # 16 Polarization: 56.21 SS G_CDS: -0.76 Total: 55.45 kcal
Total: -79.72 3.68 -76.04 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084262954.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.278 kcal
(2) G-P(sol) polarization free energy of solvation -79.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds