Wall clock time and date at job start Mon Mar 30 2020 07:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 C 1.53003 * 109.47104 * 119.99835 * 2 1 3 5 5 S 1.81397 * 109.47313 * 65.00131 * 4 2 1 6 6 O 1.42094 * 109.47108 * 63.60871 * 5 4 2 7 7 C 1.81401 * 103.00085 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.47197 * 295.00148 * 7 5 4 9 9 C 1.50703 * 109.47035 * 54.99863 * 7 5 4 10 10 H 1.07999 * 119.99853 * 234.26406 * 9 7 5 11 11 C 1.37878 * 120.00177 * 54.26798 * 9 7 5 12 12 N 1.31508 * 119.99942 * 348.94797 * 11 9 7 13 13 Si 1.86796 * 120.00093 * 168.94739 * 11 9 7 14 14 H 1.48500 * 109.47364 * 89.99930 * 13 11 9 15 15 H 1.48500 * 109.47347 * 209.99922 * 13 11 9 16 16 H 1.48501 * 109.47168 * 330.00131 * 13 11 9 17 17 C 1.50698 * 109.47105 * 174.99817 * 7 5 4 18 18 C 1.38230 * 119.99993 * 146.96873 * 17 7 5 19 19 C 1.38239 * 120.00329 * 179.80993 * 18 17 7 20 20 C 1.38239 * 119.99561 * 0.40202 * 19 18 17 21 21 C 1.38240 * 119.99884 * 359.84975 * 20 19 18 22 22 C 1.38232 * 120.00309 * 359.96145 * 21 20 19 23 23 H 1.09005 * 109.46755 * 300.00095 * 1 2 3 24 24 H 1.09000 * 109.46815 * 60.00265 * 1 2 3 25 25 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47378 * 239.99739 * 2 1 3 27 27 H 1.08998 * 109.47356 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47079 * 300.00360 * 3 2 1 29 29 H 1.09005 * 109.47454 * 59.99700 * 3 2 1 30 30 H 1.09001 * 109.47011 * 304.99613 * 4 2 1 31 31 H 1.08998 * 109.47394 * 185.00418 * 4 2 1 32 32 H 0.96996 * 120.00512 * 180.02562 * 12 11 9 33 33 H 1.07999 * 120.00359 * 359.97438 * 18 17 7 34 34 H 1.07994 * 120.00662 * 180.22984 * 19 18 17 35 35 H 1.07995 * 120.00132 * 179.83279 * 20 19 18 36 36 H 1.07998 * 119.99507 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.99903 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 1.5602 -2.4691 1.1767 6 8 2.1941 -3.0886 0.0661 7 6 2.2418 -3.1437 2.7165 8 1 3.3299 -3.0868 2.6878 9 6 1.7277 -2.3442 3.8861 10 1 2.4221 -1.9077 4.5887 11 6 0.3710 -2.1702 4.0591 12 7 -0.4629 -2.5086 3.1002 13 14 -0.2826 -1.4536 5.6556 14 1 -0.3592 0.0249 5.5398 15 1 -1.6369 -1.9998 5.9255 16 1 0.6287 -1.8162 6.7706 17 6 1.8176 -4.5820 2.8659 18 6 2.6582 -5.4900 3.4822 19 6 2.2675 -6.8085 3.6228 20 6 1.0397 -7.2208 3.1397 21 6 0.2013 -6.3139 2.5187 22 6 0.5903 -4.9945 2.3816 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6443 1.2953 32 1 -1.4174 -2.3858 3.2217 33 1 3.6190 -5.1688 3.8563 34 1 2.9226 -7.5171 4.1076 35 1 0.7355 -8.2515 3.2471 36 1 -0.7577 -6.6361 2.1409 37 1 -0.0645 -4.2861 1.8961 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084264373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:59 Heat of formation + Delta-G solvation = -34.028811 kcal Electronic energy + Delta-G solvation = -18656.043374 eV Core-core repulsion = 15910.209782 eV Total energy + Delta-G solvation = -2745.833592 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.28302 -35.51363 -34.42107 -33.75140 -31.01328 -29.93958 -27.63205 -26.73648 -26.32246 -23.47440 -21.65790 -20.56029 -19.57939 -16.97675 -16.30305 -15.65598 -15.15522 -14.75084 -14.43311 -14.13084 -13.75799 -13.66332 -12.95386 -12.75374 -12.57825 -12.29674 -12.12642 -11.86722 -11.74076 -11.52910 -11.09134 -11.03702 -10.84910 -10.71020 -10.52492 -10.38399 -10.26730 -10.06076 -9.95303 -9.69902 -9.01916 -8.50238 -7.99044 -7.66496 -6.80746 -6.21343 -4.36879 2.29159 2.36036 2.95247 3.16738 3.24645 3.28721 4.09606 4.17920 4.79931 4.94923 5.21275 5.40277 5.48856 5.58192 5.68318 5.75726 5.86126 6.03119 6.10229 6.15555 6.19295 6.29069 6.40157 6.43603 6.48164 6.54064 6.61647 6.63083 6.82675 6.88765 7.01657 7.05337 7.32081 7.42175 7.60727 7.70340 7.80307 8.00111 8.50959 9.18513 10.63545 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.009078 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.062324 B = 3083.535686 C = 4032.058494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.140 4.140 4 C -0.431 4.431 5 S 1.254 4.746 6 O -0.921 6.921 7 C -0.210 4.210 8 H 0.049 0.951 9 C -0.492 4.492 10 H 0.069 0.931 11 C 0.075 3.925 12 N -0.874 5.874 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.280 1.280 16 H -0.274 1.274 17 C -0.011 4.011 18 C -0.128 4.128 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.129 4.129 22 C -0.103 4.103 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.278 0.722 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 1.390 -0.837 2.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.199 4.199 4 C -0.567 4.567 5 S 1.460 4.540 6 O -0.916 6.916 7 C -0.329 4.329 8 H 0.068 0.932 9 C -0.533 4.533 10 H 0.087 0.913 11 C -0.130 4.130 12 N -0.512 5.512 13 Si 0.727 3.273 14 H -0.202 1.202 15 H -0.205 1.205 16 H -0.199 1.199 17 C -0.013 4.013 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.169 4.169 21 C -0.147 4.147 22 C -0.122 4.122 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.838 0.947 -1.688 3.435 hybrid contribution 1.972 0.509 1.387 2.464 sum -0.866 1.456 -0.301 1.721 Atomic orbital electron populations 1.21889 0.94584 1.02728 1.01334 1.20662 0.96300 0.95491 0.96848 1.21843 1.00395 0.96480 1.01142 1.27551 1.04772 1.21482 1.02860 1.72501 1.15824 0.83357 0.82338 1.92725 1.80358 1.71875 1.46629 1.23966 1.01683 0.95832 1.11467 0.93239 1.20511 0.92165 1.31468 1.09109 0.91285 1.24922 0.96427 0.94580 0.97082 1.69472 1.04279 1.46011 1.31483 0.86423 0.78535 0.79126 0.83254 1.20171 1.20500 1.19855 1.19709 0.93780 0.93640 0.94195 1.20929 0.99697 0.93164 1.00893 1.20866 0.96787 0.95787 1.01715 1.20859 0.95397 0.98710 1.01890 1.21067 0.99147 0.94003 1.00498 1.21619 0.96062 0.95296 0.99233 0.91898 0.93379 0.91539 0.91941 0.93467 0.93275 0.92586 0.86196 0.92018 0.91041 0.87490 0.87553 0.87608 0.87129 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.02 37.16 0.34 -2.01 16 2 C -0.07 -1.30 2.92 -90.62 -0.26 -1.57 16 3 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 4 C -0.43 -8.74 4.97 37.16 0.18 -8.56 16 5 S 1.25 28.94 7.68 -107.50 -0.83 28.11 16 6 O -0.92 -25.26 18.14 -35.23 -0.64 -25.90 16 7 C -0.21 -5.06 2.81 -29.03 -0.08 -5.15 16 8 H 0.05 1.20 8.06 -51.92 -0.42 0.78 16 9 C -0.49 -11.76 7.76 -34.44 -0.27 -12.03 16 10 H 0.07 1.66 7.84 -52.49 -0.41 1.25 16 11 C 0.08 1.71 5.12 -17.82 -0.09 1.62 16 12 N -0.87 -19.23 8.57 55.43 0.47 -18.76 16 13 Si 0.90 18.44 29.55 -169.99 -5.02 13.41 16 14 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 C -0.01 -0.26 4.75 -104.63 -0.50 -0.76 16 18 C -0.13 -2.77 9.69 -39.58 -0.38 -3.15 16 19 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 20 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 21 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 22 C -0.10 -2.32 7.94 -39.58 -0.31 -2.63 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.09 7.13 -51.93 -0.37 0.72 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.12 2.40 7.65 -51.92 -0.40 2.01 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.28 5.73 8.31 -40.82 -0.34 5.39 16 33 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 34 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.15 3.37 5.17 -52.49 -0.27 3.10 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -28.08 312.95 -9.18 -37.26 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.65 Total: 6.17 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: -2.23 Total: -45.01 kcal Atomic # 7 Polarization: -19.23 SS G_CDS: 0.47 Total: -18.76 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.64 Total: -25.90 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.41 kcal Atomic # 16 Polarization: 28.94 SS G_CDS: -0.83 Total: 28.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.08 -9.18 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.232 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds