Wall clock time and date at job start Mon Mar 30 2020 07:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 C 1.53003 * 109.47104 * 119.99835 * 2 1 3 5 5 S 1.81397 * 109.47313 * 65.00131 * 4 2 1 6 6 O 1.42094 * 109.47108 * 63.60871 * 5 4 2 7 7 C 1.81401 * 103.00085 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.47197 * 295.00148 * 7 5 4 9 9 C 1.50703 * 109.47035 * 54.99863 * 7 5 4 10 10 H 1.07999 * 119.99853 * 234.26406 * 9 7 5 11 11 C 1.37878 * 120.00177 * 54.26798 * 9 7 5 12 12 N 1.31508 * 119.99942 * 348.94797 * 11 9 7 13 13 Si 1.86796 * 120.00093 * 168.94739 * 11 9 7 14 14 H 1.48500 * 109.47364 * 89.99930 * 13 11 9 15 15 H 1.48500 * 109.47347 * 209.99922 * 13 11 9 16 16 H 1.48501 * 109.47168 * 330.00131 * 13 11 9 17 17 C 1.50698 * 109.47105 * 174.99817 * 7 5 4 18 18 C 1.38230 * 119.99993 * 146.96873 * 17 7 5 19 19 C 1.38239 * 120.00329 * 179.80993 * 18 17 7 20 20 C 1.38239 * 119.99561 * 0.40202 * 19 18 17 21 21 C 1.38240 * 119.99884 * 359.84975 * 20 19 18 22 22 C 1.38232 * 120.00309 * 359.96145 * 21 20 19 23 23 H 1.09005 * 109.46755 * 300.00095 * 1 2 3 24 24 H 1.09000 * 109.46815 * 60.00265 * 1 2 3 25 25 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47378 * 239.99739 * 2 1 3 27 27 H 1.08998 * 109.47356 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47079 * 300.00360 * 3 2 1 29 29 H 1.09005 * 109.47454 * 59.99700 * 3 2 1 30 30 H 1.09001 * 109.47011 * 304.99613 * 4 2 1 31 31 H 1.08998 * 109.47394 * 185.00418 * 4 2 1 32 32 H 0.96996 * 120.00512 * 180.02562 * 12 11 9 33 33 H 1.07999 * 120.00359 * 359.97438 * 18 17 7 34 34 H 1.07994 * 120.00662 * 180.22984 * 19 18 17 35 35 H 1.07995 * 120.00132 * 179.83279 * 20 19 18 36 36 H 1.07998 * 119.99507 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.99903 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 1.5602 -2.4691 1.1767 6 8 2.1941 -3.0886 0.0661 7 6 2.2418 -3.1437 2.7165 8 1 3.3299 -3.0868 2.6878 9 6 1.7277 -2.3442 3.8861 10 1 2.4221 -1.9077 4.5887 11 6 0.3710 -2.1702 4.0591 12 7 -0.4629 -2.5086 3.1002 13 14 -0.2826 -1.4536 5.6556 14 1 -0.3592 0.0249 5.5398 15 1 -1.6369 -1.9998 5.9255 16 1 0.6287 -1.8162 6.7706 17 6 1.8176 -4.5820 2.8659 18 6 2.6582 -5.4900 3.4822 19 6 2.2675 -6.8085 3.6228 20 6 1.0397 -7.2208 3.1397 21 6 0.2013 -6.3139 2.5187 22 6 0.5903 -4.9945 2.3816 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6443 1.2953 32 1 -1.4174 -2.3858 3.2217 33 1 3.6190 -5.1688 3.8563 34 1 2.9226 -7.5171 4.1076 35 1 0.7355 -8.2515 3.2471 36 1 -0.7577 -6.6361 2.1409 37 1 -0.0645 -4.2861 1.8961 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084264373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:59 Heat of formation + Delta-G solvation = -48.838754 kcal Electronic energy + Delta-G solvation = -18656.685581 eV Core-core repulsion = 15910.209782 eV Total energy + Delta-G solvation = -2746.475799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87602 -36.92596 -36.38044 -35.54050 -32.71466 -31.51664 -29.33332 -27.98959 -27.86608 -25.23880 -23.24216 -22.16896 -21.02194 -18.80177 -18.00550 -17.34167 -16.88715 -16.35924 -16.03754 -15.73199 -15.40803 -15.15239 -14.58968 -14.36688 -14.13000 -13.88711 -13.86743 -13.36193 -13.23532 -12.87423 -12.70988 -12.68420 -12.55931 -12.22106 -12.06464 -11.89706 -11.79163 -11.63661 -11.53597 -11.41736 -10.81266 -10.30635 -9.58574 -9.31337 -8.63987 -7.99503 -6.19336 0.68004 0.77107 1.17194 1.53505 1.58482 1.64475 2.31070 2.47317 3.15717 3.17913 3.42324 3.99546 4.01929 4.17039 4.24485 4.27474 4.37692 4.52289 4.60278 4.67300 4.77429 4.90282 4.90813 5.00494 5.05068 5.07907 5.11531 5.29595 5.30491 5.45513 5.48128 5.56247 5.73174 5.75597 5.86891 5.97766 6.09058 6.39617 6.68749 7.37378 8.89860 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.009078 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.062324 B = 3083.535686 C = 4032.058494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.136 4.136 4 C -0.420 4.420 5 S 1.260 4.740 6 O -0.973 6.973 7 C -0.209 4.209 8 H 0.025 0.975 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.056 3.944 12 N -0.872 5.872 13 Si 0.948 3.052 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.287 1.287 17 C -0.046 4.046 18 C -0.154 4.154 19 C -0.130 4.130 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.128 4.128 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.050 0.950 32 H 0.288 0.712 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 1.272 -0.273 3.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.558 4.558 5 S 1.469 4.531 6 O -0.968 6.968 7 C -0.329 4.329 8 H 0.043 0.957 9 C -0.559 4.559 10 H 0.076 0.924 11 C -0.150 4.150 12 N -0.509 5.509 13 Si 0.774 3.226 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.213 1.213 17 C -0.048 4.048 18 C -0.173 4.173 19 C -0.148 4.148 20 C -0.162 4.162 21 C -0.151 4.151 22 C -0.147 4.147 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.457 0.808 -1.147 4.673 hybrid contribution 2.478 0.521 1.240 2.820 sum -1.979 1.329 0.093 2.386 Atomic orbital electron populations 1.21920 0.92933 1.02539 1.03253 1.20763 0.97843 0.96890 0.94291 1.21813 1.00287 0.94404 1.02932 1.27443 1.04290 1.19277 1.04813 1.71776 1.15903 0.84389 0.81068 1.92639 1.81626 1.73854 1.48658 1.23952 1.00032 0.97214 1.11692 0.95659 1.20474 0.92827 1.33133 1.09427 0.92430 1.25335 0.96067 0.94601 0.99032 1.69487 1.04806 1.44764 1.31872 0.85687 0.77753 0.79149 0.80018 1.19037 1.19825 1.21309 1.19878 0.95156 0.93650 0.96157 1.21147 0.99835 0.94566 1.01727 1.21284 0.97651 0.95047 1.00825 1.21356 0.94476 1.00450 0.99908 1.21471 1.00638 0.93018 0.99968 1.21706 0.95896 0.96867 1.00246 0.90992 0.90482 0.92809 0.93759 0.93746 0.90684 0.91583 0.85700 0.93060 0.90099 0.87592 0.84069 0.83377 0.84117 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.02 71.98 0.65 -3.86 16 2 C -0.08 -2.73 2.92 -10.79 -0.03 -2.76 16 3 C -0.14 -3.78 9.19 71.98 0.66 -3.12 16 4 C -0.42 -17.41 4.97 71.98 0.36 -17.05 16 5 S 1.26 60.43 7.68 -56.49 -0.43 59.99 16 6 O -0.97 -55.89 18.14 -148.98 -2.70 -58.60 16 7 C -0.21 -10.57 2.81 29.10 0.08 -10.49 16 8 H 0.02 1.31 8.06 -2.39 -0.02 1.29 16 9 C -0.52 -25.50 7.76 25.60 0.20 -25.30 16 10 H 0.06 2.88 7.84 -2.91 -0.02 2.86 16 11 C 0.06 2.53 5.12 84.66 0.43 2.96 16 12 N -0.87 -38.11 8.57 21.45 0.18 -37.92 16 13 Si 0.95 37.08 29.55 68.60 2.03 39.11 16 14 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 15 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 17 C -0.05 -2.25 4.75 -19.87 -0.09 -2.34 16 18 C -0.15 -6.74 9.69 22.27 0.22 -6.53 16 19 C -0.13 -4.71 10.05 22.27 0.22 -4.48 16 20 C -0.14 -4.87 10.05 22.27 0.22 -4.64 16 21 C -0.13 -5.00 10.05 22.27 0.22 -4.78 16 22 C -0.13 -5.80 7.94 22.27 0.18 -5.62 16 23 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.05 1.75 7.13 -2.39 -0.02 1.73 16 26 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.12 5.04 7.65 -2.39 -0.02 5.02 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.29 11.50 8.31 -92.71 -0.77 10.73 16 33 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.14 6.54 5.17 -2.91 -0.02 6.53 16 Total: -1.00 -61.94 312.95 3.42 -58.51 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.03 Total: 26.91 kcal Atomic # 6 Polarization: -91.33 SS G_CDS: 3.32 Total: -88.01 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.18 Total: -37.92 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -2.70 Total: -58.60 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 60.43 SS G_CDS: -0.43 Total: 59.99 kcal Total: -61.94 3.42 -58.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.675 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds