Wall clock time and date at job start Mon Mar 30 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46882 * 2 1 4 4 C 1.52995 * 109.46938 * 119.99936 * 2 1 3 5 5 S 1.81398 * 109.47195 * 174.99965 * 4 2 1 6 6 O 1.42106 * 109.46897 * 63.60933 * 5 4 2 7 7 C 1.81394 * 103.00335 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47542 * 63.24726 * 7 5 4 9 9 C 1.50698 * 109.47093 * 303.24663 * 7 5 4 10 10 H 1.08002 * 120.00237 * 335.03653 * 9 7 5 11 11 C 1.37877 * 120.00207 * 155.03576 * 9 7 5 12 12 N 1.31516 * 120.00236 * 173.15199 * 11 9 7 13 13 Si 1.86803 * 119.99751 * 353.14668 * 11 9 7 14 14 H 1.48498 * 109.47117 * 91.20022 * 13 11 9 15 15 H 1.48499 * 109.47013 * 211.20086 * 13 11 9 16 16 H 1.48503 * 109.46975 * 331.19886 * 13 11 9 17 17 C 1.50708 * 109.47256 * 183.24838 * 7 5 4 18 18 C 1.38232 * 119.99738 * 244.26905 * 17 7 5 19 19 C 1.38235 * 119.99552 * 179.97438 * 18 17 7 20 20 C 1.38243 * 120.00310 * 0.02562 * 19 18 17 21 21 C 1.38239 * 119.99510 * 0.06789 * 20 19 18 22 22 C 1.38226 * 120.00326 * 359.90763 * 21 20 19 23 23 H 1.08995 * 109.46679 * 299.99932 * 1 2 3 24 24 H 1.08995 * 109.47205 * 60.00358 * 1 2 3 25 25 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46603 * 239.99563 * 2 1 3 27 27 H 1.08998 * 109.47169 * 60.00042 * 3 2 1 28 28 H 1.08998 * 109.46918 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47332 * 299.99958 * 3 2 1 30 30 H 1.08998 * 109.47515 * 55.00198 * 4 2 1 31 31 H 1.09002 * 109.47712 * 294.99865 * 4 2 1 32 32 H 0.97001 * 119.99592 * 179.97438 * 12 11 9 33 33 H 1.07990 * 120.00466 * 359.97438 * 18 17 7 34 34 H 1.08000 * 120.00057 * 179.72291 * 19 18 17 35 35 H 1.07995 * 119.99809 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.99403 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00119 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8479 -0.8514 1.1766 6 8 4.4178 0.4501 1.2011 7 6 4.2566 -1.7203 2.7156 8 1 3.8140 -2.7163 2.6992 9 6 3.7112 -0.9475 3.8888 10 1 3.5429 0.1159 3.8038 11 6 3.4271 -1.5980 5.0708 12 7 3.0801 -0.9072 6.1347 13 14 3.5348 -3.4608 5.1609 14 1 4.9003 -3.8575 5.5892 15 1 2.5417 -3.9671 6.1420 16 1 3.2481 -4.0385 3.8233 17 6 5.7536 -1.8379 2.8438 18 6 6.3526 -3.0836 2.8305 19 6 7.7258 -3.1915 2.9475 20 6 8.4999 -2.0536 3.0783 21 6 7.9005 -0.8080 3.0935 22 6 6.5275 -0.7001 2.9760 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6055 -1.7198 1.2952 31 1 1.7517 -0.1583 2.1370 32 1 2.8799 -1.3650 6.9661 33 1 5.7479 -3.9726 2.7287 34 1 8.1935 -4.1649 2.9417 35 1 9.5726 -2.1379 3.1702 36 1 8.5053 0.0809 3.1961 37 1 6.0593 0.2731 2.9875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084264376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:05 Heat of formation + Delta-G solvation = -30.003452 kcal Electronic energy + Delta-G solvation = -18418.983410 eV Core-core repulsion = 15673.324370 eV Total energy + Delta-G solvation = -2745.659040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.50723 -35.80317 -34.61146 -33.67641 -31.47820 -30.18163 -27.87411 -26.87214 -26.54043 -23.14889 -21.88155 -20.65158 -19.77806 -17.14767 -16.65314 -16.04696 -15.37741 -14.86005 -14.72958 -14.30567 -13.92057 -13.70538 -13.16607 -12.74765 -12.68129 -12.57792 -12.30150 -12.06611 -11.94067 -11.75412 -11.41653 -11.08625 -11.00934 -10.97155 -10.54628 -10.46309 -10.41027 -10.32564 -9.86046 -9.65056 -8.92767 -8.70087 -8.21520 -8.00167 -7.16939 -6.26356 -4.29752 1.97375 2.11007 2.71317 3.17038 3.22591 3.27086 3.58280 4.26551 4.56562 4.66413 5.07368 5.15818 5.25250 5.42438 5.50746 5.57021 5.68652 5.88377 5.91171 5.94817 5.96113 6.19667 6.23172 6.26414 6.27828 6.32759 6.44725 6.48446 6.66007 6.78142 6.80910 6.82832 7.10398 7.22396 7.34359 7.51735 7.76119 8.15653 8.73267 9.32490 10.84457 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.008654 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.674838 B = 3234.586965 C = 4205.626476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.172 4.172 4 C -0.432 4.432 5 S 1.209 4.791 6 O -0.851 6.851 7 C -0.254 4.254 8 H 0.092 0.908 9 C -0.509 4.509 10 H 0.078 0.922 11 C 0.086 3.914 12 N -0.885 5.885 13 Si 0.870 3.130 14 H -0.269 1.269 15 H -0.288 1.288 16 H -0.257 1.257 17 C -0.033 4.033 18 C -0.136 4.136 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.093 4.093 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.267 0.733 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -5.242 -11.851 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.229 4.229 4 C -0.569 4.569 5 S 1.413 4.587 6 O -0.846 6.846 7 C -0.373 4.373 8 H 0.110 0.890 9 C -0.547 4.547 10 H 0.097 0.903 11 C -0.119 4.119 12 N -0.521 5.521 13 Si 0.697 3.303 14 H -0.195 1.195 15 H -0.214 1.214 16 H -0.182 1.182 17 C -0.036 4.036 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.162 4.162 21 C -0.144 4.144 22 C -0.112 4.112 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.905 -4.877 -12.375 13.437 hybrid contribution -0.692 0.073 2.483 2.578 sum 1.214 -4.804 -9.892 11.064 Atomic orbital electron populations 1.21847 0.95479 1.01424 1.01263 1.20686 0.95782 0.96142 0.96417 1.22221 1.04129 0.95606 1.00926 1.27538 1.20927 1.05830 1.02634 1.69591 0.85622 0.99559 1.03931 1.92993 1.70043 1.38774 1.82816 1.24523 0.93572 1.06515 1.12683 0.89009 1.20532 1.43102 0.95909 0.95148 0.90350 1.25047 0.93499 0.98351 0.95053 1.69918 1.44999 1.36057 1.01088 0.86873 0.78724 0.86284 0.78372 1.19464 1.21411 1.18221 1.20052 0.95349 0.92535 0.95617 1.21025 0.94526 0.97051 1.02891 1.20935 0.93975 0.97782 1.01862 1.20911 0.98883 0.92939 1.03512 1.21076 0.95118 0.96984 1.01211 1.21223 0.92995 0.99598 0.97349 0.92821 0.93192 0.92760 0.91128 0.92973 0.89543 0.93477 0.87751 0.88232 0.92320 0.86909 0.87090 0.87237 0.87058 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 2 C -0.07 -1.02 2.92 -90.62 -0.26 -1.28 16 3 C -0.17 -2.75 8.85 37.16 0.33 -2.42 16 4 C -0.43 -7.25 5.01 37.16 0.19 -7.07 16 5 S 1.21 21.60 12.38 -107.50 -1.33 20.27 16 6 O -0.85 -19.06 13.89 -35.23 -0.49 -19.55 16 7 C -0.25 -5.46 2.05 -29.03 -0.06 -5.52 16 8 H 0.09 1.84 5.06 -51.92 -0.26 1.58 16 9 C -0.51 -13.58 7.48 -34.44 -0.26 -13.84 16 10 H 0.08 2.39 8.04 -52.49 -0.42 1.97 16 11 C 0.09 2.39 5.47 -17.82 -0.10 2.30 16 12 N -0.88 -26.52 13.96 55.43 0.77 -25.75 16 13 Si 0.87 20.51 26.69 -169.99 -4.54 15.97 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.26 -5.38 6.06 56.52 0.34 -5.03 16 17 C -0.03 -0.70 4.40 -104.62 -0.46 -1.16 16 18 C -0.14 -2.55 9.04 -39.58 -0.36 -2.91 16 19 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 20 C -0.14 -2.43 10.05 -39.58 -0.40 -2.83 16 21 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 22 C -0.09 -2.03 8.53 -39.58 -0.34 -2.37 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.57 5.35 -51.93 -0.28 1.29 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.10 2.03 7.71 -51.92 -0.40 1.63 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.11 1.90 7.95 -52.49 -0.42 1.48 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.13 3.15 6.99 -52.49 -0.37 2.79 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -32.76 310.86 -8.64 -41.40 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.57 Total: 6.87 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: -2.17 Total: -43.89 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.49 Total: -19.55 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.54 Total: 15.97 kcal Atomic # 16 Polarization: 21.60 SS G_CDS: -1.33 Total: 20.27 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.76 -8.64 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.394 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds