Wall clock time and date at job start Mon Mar 30 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46882 * 2 1 4 4 C 1.52995 * 109.46938 * 119.99936 * 2 1 3 5 5 S 1.81398 * 109.47195 * 174.99965 * 4 2 1 6 6 O 1.42106 * 109.46897 * 63.60933 * 5 4 2 7 7 C 1.81394 * 103.00335 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47542 * 63.24726 * 7 5 4 9 9 C 1.50698 * 109.47093 * 303.24663 * 7 5 4 10 10 H 1.08002 * 120.00237 * 335.03653 * 9 7 5 11 11 C 1.37877 * 120.00207 * 155.03576 * 9 7 5 12 12 N 1.31516 * 120.00236 * 173.15199 * 11 9 7 13 13 Si 1.86803 * 119.99751 * 353.14668 * 11 9 7 14 14 H 1.48498 * 109.47117 * 91.20022 * 13 11 9 15 15 H 1.48499 * 109.47013 * 211.20086 * 13 11 9 16 16 H 1.48503 * 109.46975 * 331.19886 * 13 11 9 17 17 C 1.50708 * 109.47256 * 183.24838 * 7 5 4 18 18 C 1.38232 * 119.99738 * 244.26905 * 17 7 5 19 19 C 1.38235 * 119.99552 * 179.97438 * 18 17 7 20 20 C 1.38243 * 120.00310 * 0.02562 * 19 18 17 21 21 C 1.38239 * 119.99510 * 0.06789 * 20 19 18 22 22 C 1.38226 * 120.00326 * 359.90763 * 21 20 19 23 23 H 1.08995 * 109.46679 * 299.99932 * 1 2 3 24 24 H 1.08995 * 109.47205 * 60.00358 * 1 2 3 25 25 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46603 * 239.99563 * 2 1 3 27 27 H 1.08998 * 109.47169 * 60.00042 * 3 2 1 28 28 H 1.08998 * 109.46918 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47332 * 299.99958 * 3 2 1 30 30 H 1.08998 * 109.47515 * 55.00198 * 4 2 1 31 31 H 1.09002 * 109.47712 * 294.99865 * 4 2 1 32 32 H 0.97001 * 119.99592 * 179.97438 * 12 11 9 33 33 H 1.07990 * 120.00466 * 359.97438 * 18 17 7 34 34 H 1.08000 * 120.00057 * 179.72291 * 19 18 17 35 35 H 1.07995 * 119.99809 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.99403 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00119 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8479 -0.8514 1.1766 6 8 4.4178 0.4501 1.2011 7 6 4.2566 -1.7203 2.7156 8 1 3.8140 -2.7163 2.6992 9 6 3.7112 -0.9475 3.8888 10 1 3.5429 0.1159 3.8038 11 6 3.4271 -1.5980 5.0708 12 7 3.0801 -0.9072 6.1347 13 14 3.5348 -3.4608 5.1609 14 1 4.9003 -3.8575 5.5892 15 1 2.5417 -3.9671 6.1420 16 1 3.2481 -4.0385 3.8233 17 6 5.7536 -1.8379 2.8438 18 6 6.3526 -3.0836 2.8305 19 6 7.7258 -3.1915 2.9475 20 6 8.4999 -2.0536 3.0783 21 6 7.9005 -0.8080 3.0935 22 6 6.5275 -0.7001 2.9760 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6055 -1.7198 1.2952 31 1 1.7517 -0.1583 2.1370 32 1 2.8799 -1.3650 6.9661 33 1 5.7479 -3.9726 2.7287 34 1 8.1935 -4.1649 2.9417 35 1 9.5726 -2.1379 3.1702 36 1 8.5053 0.0809 3.1961 37 1 6.0593 0.2731 2.9875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084264376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:04 Heat of formation + Delta-G solvation = -51.263796 kcal Electronic energy + Delta-G solvation = -18419.905327 eV Core-core repulsion = 15673.324370 eV Total energy + Delta-G solvation = -2746.580957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97912 -37.08530 -36.27544 -35.54902 -33.30280 -31.62969 -29.55209 -28.02720 -27.97148 -25.01785 -23.35011 -22.15241 -21.05263 -19.12252 -18.21071 -17.53411 -16.91893 -16.43283 -16.22372 -15.83404 -15.40754 -15.17752 -14.78433 -14.34488 -14.16443 -14.03066 -13.81692 -13.58173 -13.35646 -13.12325 -13.03041 -12.80077 -12.54679 -12.33047 -12.08202 -11.98160 -11.76827 -11.62331 -11.58616 -11.38047 -10.91342 -10.43885 -9.67637 -9.50363 -8.81126 -8.37173 -6.46416 0.51666 0.63826 1.23955 1.30314 1.37126 1.44134 2.05463 2.31211 2.93577 3.10500 3.20680 3.91458 4.03154 4.13654 4.18939 4.23362 4.32315 4.43697 4.64643 4.72238 4.76132 4.79154 4.81573 4.92599 4.95849 5.03225 5.14487 5.16217 5.29775 5.31614 5.44821 5.46626 5.51029 5.70349 5.75405 5.88317 6.07378 6.28234 6.58033 7.19133 8.77820 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.008654 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.674838 B = 3234.586965 C = 4205.626476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.174 4.174 4 C -0.432 4.432 5 S 1.278 4.722 6 O -0.902 6.902 7 C -0.266 4.266 8 H 0.118 0.882 9 C -0.500 4.500 10 H 0.011 0.989 11 C 0.019 3.981 12 N -0.949 5.949 13 Si 0.932 3.068 14 H -0.267 1.267 15 H -0.293 1.293 16 H -0.202 1.202 17 C -0.056 4.056 18 C -0.140 4.140 19 C -0.119 4.119 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.130 4.130 23 H 0.031 0.969 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.021 0.979 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.052 0.948 32 H 0.266 0.734 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -9.552 -14.301 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.231 4.231 4 C -0.571 4.571 5 S 1.482 4.518 6 O -0.898 6.898 7 C -0.384 4.384 8 H 0.135 0.865 9 C -0.538 4.538 10 H 0.030 0.970 11 C -0.180 4.180 12 N -0.588 5.588 13 Si 0.755 3.245 14 H -0.192 1.192 15 H -0.219 1.219 16 H -0.124 1.124 17 C -0.058 4.058 18 C -0.159 4.159 19 C -0.136 4.136 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.149 4.149 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.129 0.871 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.141 0.859 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.876 -9.186 -14.850 17.696 hybrid contribution -0.939 1.568 3.187 3.674 sum 1.937 -7.618 -11.662 14.064 Atomic orbital electron populations 1.21836 0.93750 1.02839 1.01363 1.20831 0.97260 0.94647 0.96433 1.22229 1.02503 0.97464 1.00910 1.27597 1.19842 1.07433 1.02178 1.68737 0.85404 0.97109 1.00566 1.92909 1.72342 1.41476 1.83042 1.24666 0.94488 1.07324 1.11881 0.86486 1.20526 1.42662 0.93288 0.97352 0.97048 1.26103 0.93149 1.04482 0.94266 1.70112 1.47956 1.38630 1.02094 0.85904 0.78521 0.79117 0.80996 1.19246 1.21916 1.12429 1.19976 0.94691 0.93607 0.97531 1.21387 0.96008 0.96478 1.02003 1.21479 0.93232 0.99701 0.99226 1.21371 1.00994 0.91748 1.01233 1.21304 0.93886 0.99117 1.01076 1.21057 0.94859 0.98163 1.00827 0.95003 0.90894 0.90683 0.87099 0.95974 0.92017 0.90491 0.84407 0.92877 0.92523 0.83990 0.82605 0.83284 0.85853 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.19 71.99 0.66 -2.60 16 2 C -0.07 -1.97 2.92 -10.79 -0.03 -2.01 16 3 C -0.17 -5.70 8.85 71.98 0.64 -5.06 16 4 C -0.43 -14.46 5.01 71.98 0.36 -14.10 16 5 S 1.28 46.21 12.38 -56.49 -0.70 45.51 16 6 O -0.90 -43.18 13.89 -148.98 -2.07 -45.25 16 7 C -0.27 -11.43 2.05 29.10 0.06 -11.37 16 8 H 0.12 4.32 5.06 -2.39 -0.01 4.31 16 9 C -0.50 -28.27 7.48 25.60 0.19 -28.08 16 10 H 0.01 0.76 8.04 -2.91 -0.02 0.74 16 11 C 0.02 1.09 5.47 84.65 0.46 1.55 16 12 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 13 Si 0.93 41.28 26.69 68.60 1.83 43.11 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.20 -7.10 6.06 99.48 0.60 -6.50 16 17 C -0.06 -2.35 4.40 -19.86 -0.09 -2.43 16 18 C -0.14 -4.70 9.04 22.27 0.20 -4.50 16 19 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 20 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 21 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 22 C -0.13 -5.92 8.53 22.27 0.19 -5.73 16 23 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 2.34 5.35 -2.39 -0.01 2.33 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.14 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.05 2.30 7.71 -2.39 -0.02 2.29 16 32 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.14 3.90 7.95 -2.92 -0.02 3.88 16 34 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.08 4.42 6.99 -2.91 -0.02 4.40 16 Total: -1.00 -80.82 310.86 3.61 -77.21 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.93 Total: 25.80 kcal Atomic # 6 Polarization: -89.47 SS G_CDS: 3.32 Total: -86.16 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.30 Total: -60.21 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.07 Total: -45.25 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.83 Total: 43.11 kcal Atomic # 16 Polarization: 46.21 SS G_CDS: -0.70 Total: 45.51 kcal Total: -80.82 3.61 -77.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.944 kcal (2) G-P(sol) polarization free energy of solvation -80.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds