Wall clock time and date at job start Mon Mar 30 2020 07:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 C 1.52994 * 109.47006 * 120.00096 * 2 1 3 5 5 S 1.81399 * 109.47347 * 65.00039 * 4 2 1 6 6 O 1.42102 * 109.46978 * 296.38918 * 5 4 2 7 7 C 1.81406 * 103.00195 * 179.97438 * 5 4 2 8 8 H 1.09003 * 109.46781 * 65.00060 * 7 5 4 9 9 C 1.50697 * 109.47093 * 305.00168 * 7 5 4 10 10 H 1.07999 * 120.00085 * 125.66700 * 9 7 5 11 11 C 1.37880 * 119.99889 * 305.66890 * 9 7 5 12 12 N 1.31514 * 120.00055 * 6.14325 * 11 9 7 13 13 Si 1.86798 * 120.00136 * 186.14488 * 11 9 7 14 14 H 1.48503 * 109.47242 * 59.99576 * 13 11 9 15 15 H 1.48496 * 109.47622 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47119 * 300.00115 * 13 11 9 17 17 C 1.50700 * 109.46945 * 184.99818 * 7 5 4 18 18 C 1.38232 * 119.99677 * 215.91311 * 17 7 5 19 19 C 1.38240 * 119.99967 * 180.02562 * 18 17 7 20 20 C 1.38238 * 119.99728 * 0.07762 * 19 18 17 21 21 C 1.38229 * 120.00162 * 359.97438 * 20 19 18 22 22 C 1.38230 * 120.00191 * 36.05606 * 17 7 5 23 23 H 1.08998 * 109.47159 * 299.99903 * 1 2 3 24 24 H 1.08998 * 109.47365 * 60.00042 * 1 2 3 25 25 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46579 * 239.99992 * 2 1 3 27 27 H 1.09000 * 109.46893 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47204 * 299.99819 * 3 2 1 29 29 H 1.08998 * 109.47063 * 60.00038 * 3 2 1 30 30 H 1.09000 * 109.47412 * 305.00109 * 4 2 1 31 31 H 1.09009 * 109.47076 * 184.99639 * 4 2 1 32 32 H 0.97002 * 120.00186 * 180.02562 * 12 11 9 33 33 H 1.08002 * 120.00185 * 0.11535 * 18 17 7 34 34 H 1.08001 * 120.00301 * 180.34805 * 19 18 17 35 35 H 1.08004 * 119.99807 * 179.97438 * 20 19 18 36 36 H 1.07995 * 120.00111 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99801 * 359.97158 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 16 1.5601 -2.4691 1.1766 6 8 0.1431 -2.5726 1.2010 7 6 2.2430 -3.1441 2.7156 8 1 1.7398 -2.6870 3.5676 9 6 3.7185 -2.8452 2.7841 10 1 4.1269 -2.3359 3.6444 11 6 4.5469 -3.2219 1.7483 12 7 4.0355 -3.7322 0.6494 13 14 6.3959 -3.0076 1.9059 14 1 6.8886 -3.7955 3.0643 15 1 7.0573 -3.4858 0.6654 16 1 6.7118 -1.5715 2.1139 17 6 2.0305 -4.6357 2.7477 18 6 1.7491 -5.2681 3.9443 19 6 1.5547 -6.6365 3.9739 20 6 1.6434 -7.3725 2.8071 21 6 1.9259 -6.7403 1.6108 22 6 2.1200 -5.3719 1.5812 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -0.2618 2.1369 31 1 3.1264 -0.6444 1.2951 32 1 4.6183 -3.9976 -0.0791 33 1 1.6796 -4.6930 4.8558 34 1 1.3292 -7.1298 4.9078 35 1 1.4919 -8.4416 2.8303 36 1 1.9956 -7.3154 0.6994 37 1 2.3418 -4.8780 0.6467 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084264378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:07 Heat of formation + Delta-G solvation = -30.467046 kcal Electronic energy + Delta-G solvation = -18616.814797 eV Core-core repulsion = 15871.135654 eV Total energy + Delta-G solvation = -2745.679142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.24988 -35.58559 -34.42135 -33.76219 -30.98962 -29.87608 -27.63715 -26.72186 -26.29082 -23.47223 -21.61098 -20.54933 -19.63219 -16.99767 -16.22937 -15.64179 -15.16757 -14.89788 -14.47317 -14.16197 -13.64538 -13.63704 -13.00420 -12.59730 -12.52156 -12.20084 -12.09901 -11.89017 -11.79000 -11.53513 -11.14156 -11.03539 -10.91499 -10.76968 -10.55686 -10.27892 -10.21357 -10.15520 -9.87093 -9.67883 -8.96902 -8.46298 -7.94501 -7.62833 -6.78512 -6.25513 -4.39039 2.31447 2.40837 2.94475 3.18124 3.23000 3.26083 4.08086 4.16538 4.84213 4.94186 5.20541 5.34548 5.49115 5.62993 5.70975 5.78616 5.89165 6.00184 6.12376 6.18411 6.19108 6.25855 6.38451 6.42187 6.49844 6.52745 6.67489 6.76776 6.91601 6.92410 6.96099 7.11068 7.35660 7.44473 7.62269 7.74324 7.84175 8.04353 8.49515 9.17327 10.62767 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.009206 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.996387 B = 3040.643966 C = 4190.098444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.430 4.430 5 S 1.247 4.753 6 O -0.910 6.910 7 C -0.206 4.206 8 H 0.049 0.951 9 C -0.490 4.490 10 H 0.069 0.931 11 C 0.072 3.928 12 N -0.877 5.877 13 Si 0.903 3.097 14 H -0.276 1.276 15 H -0.280 1.280 16 H -0.273 1.273 17 C -0.015 4.015 18 C -0.129 4.129 19 C -0.136 4.136 20 C -0.150 4.150 21 C -0.133 4.133 22 C -0.100 4.100 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.279 0.721 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 0.926 -2.322 2.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.566 4.566 5 S 1.453 4.547 6 O -0.905 6.905 7 C -0.325 4.325 8 H 0.067 0.933 9 C -0.530 4.530 10 H 0.087 0.913 11 C -0.133 4.133 12 N -0.516 5.516 13 Si 0.730 3.270 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.199 1.199 17 C -0.017 4.017 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.168 4.168 21 C -0.151 4.151 22 C -0.119 4.119 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.344 0.453 -3.247 3.296 hybrid contribution 0.416 0.978 2.291 2.525 sum 0.072 1.431 -0.956 1.722 Atomic orbital electron populations 1.22240 0.95687 1.04567 1.00386 1.20655 0.95293 0.95642 0.97419 1.21847 1.00959 0.96346 1.00707 1.27548 1.08619 1.20315 1.00157 1.72269 0.88648 0.87071 1.06746 1.92714 1.31475 1.82122 1.84203 1.23917 1.03433 0.94949 1.10236 0.93264 1.20531 0.88920 1.38216 1.05320 0.91316 1.24949 0.99750 0.93787 0.94793 1.69418 1.36064 1.40751 1.05331 0.86422 0.83749 0.78817 0.77989 1.20117 1.20505 1.19872 1.19692 0.93731 0.95424 0.92842 1.20930 1.02002 0.94251 0.97593 1.20839 1.03013 0.94185 0.97426 1.20861 1.03956 0.98577 0.93410 1.21094 1.01516 0.95420 0.97059 1.21918 0.95899 0.93430 1.00670 0.93680 0.93486 0.89434 0.90588 0.92627 0.93338 0.93386 0.91896 0.86397 0.91012 0.87667 0.87678 0.87740 0.87237 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 8.85 37.16 0.33 -2.74 16 2 C -0.07 -1.23 2.92 -90.62 -0.26 -1.49 16 3 C -0.14 -2.06 9.19 37.16 0.34 -1.71 16 4 C -0.43 -8.55 4.98 37.15 0.18 -8.37 16 5 S 1.25 27.95 9.01 -107.50 -0.97 26.99 16 6 O -0.91 -23.64 15.46 -35.23 -0.54 -24.18 16 7 C -0.21 -4.90 2.82 -29.04 -0.08 -4.98 16 8 H 0.05 1.18 8.05 -51.92 -0.42 0.76 16 9 C -0.49 -11.64 7.77 -34.44 -0.27 -11.91 16 10 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 11 C 0.07 1.64 5.12 -17.82 -0.09 1.54 16 12 N -0.88 -19.38 8.17 55.43 0.45 -18.93 16 13 Si 0.90 18.40 29.54 -169.99 -5.02 13.38 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 C -0.01 -0.34 4.76 -104.63 -0.50 -0.84 16 18 C -0.13 -2.80 9.68 -39.58 -0.38 -3.18 16 19 C -0.14 -2.63 10.05 -39.58 -0.40 -3.03 16 20 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 21 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 22 C -0.10 -2.25 7.81 -39.58 -0.31 -2.56 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.81 5.35 -51.93 -0.28 1.53 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 31 H 0.12 2.32 7.65 -51.92 -0.40 1.92 16 32 H 0.28 5.78 8.31 -40.82 -0.34 5.44 16 33 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.16 3.60 4.91 -52.49 -0.26 3.34 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -27.13 308.86 -9.21 -36.34 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.55 Total: 7.24 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: -2.23 Total: -45.48 kcal Atomic # 7 Polarization: -19.38 SS G_CDS: 0.45 Total: -18.93 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.54 Total: -24.18 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Atomic # 16 Polarization: 27.95 SS G_CDS: -0.97 Total: 26.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.13 -9.21 -36.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.869 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds