Wall clock time and date at job start Mon Mar 30 2020 07:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 C 1.52994 * 109.47006 * 120.00096 * 2 1 3 5 5 S 1.81399 * 109.47347 * 65.00039 * 4 2 1 6 6 O 1.42102 * 109.46978 * 296.38918 * 5 4 2 7 7 C 1.81406 * 103.00195 * 179.97438 * 5 4 2 8 8 H 1.09003 * 109.46781 * 65.00060 * 7 5 4 9 9 C 1.50697 * 109.47093 * 305.00168 * 7 5 4 10 10 H 1.07999 * 120.00085 * 125.66700 * 9 7 5 11 11 C 1.37880 * 119.99889 * 305.66890 * 9 7 5 12 12 N 1.31514 * 120.00055 * 6.14325 * 11 9 7 13 13 Si 1.86798 * 120.00136 * 186.14488 * 11 9 7 14 14 H 1.48503 * 109.47242 * 59.99576 * 13 11 9 15 15 H 1.48496 * 109.47622 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47119 * 300.00115 * 13 11 9 17 17 C 1.50700 * 109.46945 * 184.99818 * 7 5 4 18 18 C 1.38232 * 119.99677 * 215.91311 * 17 7 5 19 19 C 1.38240 * 119.99967 * 180.02562 * 18 17 7 20 20 C 1.38238 * 119.99728 * 0.07762 * 19 18 17 21 21 C 1.38229 * 120.00162 * 359.97438 * 20 19 18 22 22 C 1.38230 * 120.00191 * 36.05606 * 17 7 5 23 23 H 1.08998 * 109.47159 * 299.99903 * 1 2 3 24 24 H 1.08998 * 109.47365 * 60.00042 * 1 2 3 25 25 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46579 * 239.99992 * 2 1 3 27 27 H 1.09000 * 109.46893 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47204 * 299.99819 * 3 2 1 29 29 H 1.08998 * 109.47063 * 60.00038 * 3 2 1 30 30 H 1.09000 * 109.47412 * 305.00109 * 4 2 1 31 31 H 1.09009 * 109.47076 * 184.99639 * 4 2 1 32 32 H 0.97002 * 120.00186 * 180.02562 * 12 11 9 33 33 H 1.08002 * 120.00185 * 0.11535 * 18 17 7 34 34 H 1.08001 * 120.00301 * 180.34805 * 19 18 17 35 35 H 1.08004 * 119.99807 * 179.97438 * 20 19 18 36 36 H 1.07995 * 120.00111 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99801 * 359.97158 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 16 1.5601 -2.4691 1.1766 6 8 0.1431 -2.5726 1.2010 7 6 2.2430 -3.1441 2.7156 8 1 1.7398 -2.6870 3.5676 9 6 3.7185 -2.8452 2.7841 10 1 4.1269 -2.3359 3.6444 11 6 4.5469 -3.2219 1.7483 12 7 4.0355 -3.7322 0.6494 13 14 6.3959 -3.0076 1.9059 14 1 6.8886 -3.7955 3.0643 15 1 7.0573 -3.4858 0.6654 16 1 6.7118 -1.5715 2.1139 17 6 2.0305 -4.6357 2.7477 18 6 1.7491 -5.2681 3.9443 19 6 1.5547 -6.6365 3.9739 20 6 1.6434 -7.3725 2.8071 21 6 1.9259 -6.7403 1.6108 22 6 2.1200 -5.3719 1.5812 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -0.2618 2.1369 31 1 3.1264 -0.6444 1.2951 32 1 4.6183 -3.9976 -0.0791 33 1 1.6796 -4.6930 4.8558 34 1 1.3292 -7.1298 4.9078 35 1 1.4919 -8.4416 2.8303 36 1 1.9956 -7.3154 0.6994 37 1 2.3418 -4.8780 0.6467 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084264378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:07 Heat of formation + Delta-G solvation = -43.951004 kcal Electronic energy + Delta-G solvation = -18617.399505 eV Core-core repulsion = 15871.135654 eV Total energy + Delta-G solvation = -2746.263851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84751 -37.04047 -36.26339 -35.52648 -32.68439 -31.46187 -29.33071 -27.99985 -27.87965 -25.22540 -23.20240 -22.15436 -21.07184 -18.79383 -17.90853 -17.31006 -16.88939 -16.46646 -16.06373 -15.78964 -15.25256 -15.17321 -14.62857 -14.18383 -14.05125 -13.83673 -13.69358 -13.50081 -13.24457 -13.00119 -12.78897 -12.68025 -12.55303 -12.29466 -12.13843 -11.88734 -11.68224 -11.60485 -11.53364 -11.37768 -10.71696 -10.22842 -9.54969 -9.27593 -8.58649 -8.00651 -6.20164 0.69624 0.81287 1.20992 1.54932 1.58515 1.63352 2.33455 2.47193 3.16418 3.21771 3.44977 3.91678 4.08010 4.18529 4.26945 4.29339 4.39949 4.54518 4.60850 4.68096 4.77037 4.80281 4.93184 4.95453 5.04130 5.06337 5.20217 5.30502 5.33007 5.44958 5.49621 5.51864 5.72688 5.77718 5.90290 6.01870 6.14741 6.43441 6.68913 7.37513 8.89815 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.009206 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.996387 B = 3040.643966 C = 4190.098444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.136 4.136 4 C -0.420 4.420 5 S 1.256 4.744 6 O -0.952 6.952 7 C -0.208 4.208 8 H 0.024 0.976 9 C -0.516 4.516 10 H 0.057 0.943 11 C 0.052 3.948 12 N -0.877 5.877 13 Si 0.951 3.049 14 H -0.289 1.289 15 H -0.267 1.267 16 H -0.269 1.269 17 C -0.048 4.048 18 C -0.156 4.156 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.124 4.124 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.121 0.879 32 H 0.287 0.713 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 0.327 -3.390 3.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.095 4.095 3 C -0.194 4.194 4 C -0.558 4.558 5 S 1.464 4.536 6 O -0.947 6.947 7 C -0.327 4.327 8 H 0.043 0.957 9 C -0.556 4.556 10 H 0.075 0.925 11 C -0.154 4.154 12 N -0.514 5.514 13 Si 0.776 3.224 14 H -0.215 1.215 15 H -0.192 1.192 16 H -0.194 1.194 17 C -0.050 4.050 18 C -0.175 4.175 19 C -0.152 4.152 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.143 4.143 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.557 -0.168 -4.326 4.365 hybrid contribution 0.120 1.135 2.644 2.880 sum 0.678 0.967 -1.682 2.055 Atomic orbital electron populations 1.22206 0.96166 1.02841 1.01600 1.20784 0.94953 0.97484 0.96242 1.21807 1.01496 0.94160 1.01930 1.27452 1.08704 1.18255 1.01437 1.71597 0.87165 0.88604 1.06263 1.92657 1.33328 1.83818 1.84909 1.23939 1.03495 0.95872 1.09386 0.95705 1.20509 0.89208 1.40028 1.05838 0.92490 1.25368 1.02246 0.93319 0.94426 1.69453 1.37091 1.39555 1.05299 0.85704 0.80217 0.78690 0.77744 1.21525 1.19166 1.19414 1.19879 0.95656 0.95323 0.94184 1.21153 1.03257 0.95899 0.97163 1.21246 1.01476 0.93116 0.99397 1.21343 1.01922 1.00589 0.92423 1.21494 1.00411 0.94580 0.99027 1.22000 0.97339 0.94881 1.00069 0.94398 0.90341 0.92566 0.89318 0.91786 0.90767 0.93566 0.93017 0.86035 0.90177 0.87822 0.84338 0.83627 0.84277 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.02 8.85 71.98 0.64 -5.38 16 2 C -0.08 -2.53 2.92 -10.80 -0.03 -2.56 16 3 C -0.14 -3.64 9.19 71.98 0.66 -2.98 16 4 C -0.42 -16.92 4.98 71.98 0.36 -16.56 16 5 S 1.26 58.20 9.01 -56.49 -0.51 57.70 16 6 O -0.95 -51.56 15.46 -148.98 -2.30 -53.87 16 7 C -0.21 -10.33 2.82 29.10 0.08 -10.25 16 8 H 0.02 1.27 8.05 -2.39 -0.02 1.25 16 9 C -0.52 -25.26 7.77 25.60 0.20 -25.06 16 10 H 0.06 2.83 7.82 -2.91 -0.02 2.81 16 11 C 0.05 2.34 5.12 84.66 0.43 2.77 16 12 N -0.88 -38.43 8.17 21.45 0.18 -38.26 16 13 Si 0.95 37.06 29.54 68.60 2.03 39.08 16 14 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16 15 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 16 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 17 C -0.05 -2.33 4.76 -19.87 -0.09 -2.43 16 18 C -0.16 -6.88 9.68 22.27 0.22 -6.66 16 19 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 20 C -0.14 -4.98 10.05 22.27 0.22 -4.76 16 21 C -0.14 -5.20 10.05 22.27 0.22 -4.97 16 22 C -0.12 -5.58 7.81 22.27 0.17 -5.41 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 2.36 5.35 -2.39 -0.01 2.35 16 26 H 0.09 2.75 8.14 -2.38 -0.02 2.74 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.12 4.79 7.65 -2.39 -0.02 4.77 16 32 H 0.29 11.57 8.31 -92.71 -0.77 10.80 16 33 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 35 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.16 7.04 4.91 -2.91 -0.01 7.03 16 Total: -1.00 -59.53 308.86 3.73 -55.81 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 1.03 Total: 28.51 kcal Atomic # 6 Polarization: -92.27 SS G_CDS: 3.31 Total: -88.97 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.18 Total: -38.26 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -2.30 Total: -53.87 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.08 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.51 Total: 57.70 kcal Total: -59.53 3.73 -55.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.854 kcal (2) G-P(sol) polarization free energy of solvation -59.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds