Wall clock time and date at job start Mon Mar 30 2020 07:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 H 1.08997 * 109.47268 * 305.92624 * 3 2 1 5 5 C 1.50699 * 109.47439 * 185.92061 * 3 2 1 6 6 H 1.08000 * 120.00646 * 275.19701 * 5 3 2 7 7 C 1.37881 * 119.99706 * 95.18655 * 5 3 2 8 8 N 1.31513 * 119.99850 * 184.64619 * 7 5 3 9 9 Si 1.86803 * 119.99886 * 4.65682 * 7 5 3 10 10 H 1.48492 * 109.47507 * 84.84935 * 9 7 5 11 11 H 1.48504 * 109.46624 * 204.85231 * 9 7 5 12 12 H 1.48502 * 109.46907 * 324.84909 * 9 7 5 13 13 C 1.50701 * 109.47081 * 65.92258 * 3 2 1 14 14 O 1.21303 * 119.99965 * 95.00215 * 13 3 2 15 15 C 1.46862 * 120.00478 * 274.99704 * 13 3 2 16 16 C 1.40021 * 120.10810 * 179.97438 * 15 13 3 17 17 C 1.37625 * 119.92011 * 180.02562 * 16 15 13 18 18 C 1.39009 * 120.14651 * 0.02562 * 17 16 15 19 19 O 1.35715 * 119.89097 * 179.97438 * 18 17 16 20 20 C 1.42894 * 117.00133 * 0.02562 * 19 18 17 21 21 C 1.39257 * 120.21498 * 0.02562 * 18 17 16 22 22 F 1.35102 * 119.95977 * 179.97438 * 21 18 17 23 23 C 1.37785 * 120.07136 * 0.25047 * 21 18 17 24 24 H 1.08998 * 109.47389 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.47061 * 300.00344 * 1 2 3 26 26 H 1.09005 * 109.47040 * 59.99599 * 1 2 3 27 27 H 1.09000 * 109.46818 * 239.99776 * 2 1 3 28 28 H 1.09004 * 109.46658 * 120.00023 * 2 1 3 29 29 H 0.97007 * 119.99425 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.04113 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.92513 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.47140 * 60.00364 * 20 19 18 33 33 H 1.09005 * 109.47104 * 179.97438 * 20 19 18 34 34 H 1.08994 * 109.47611 * 300.00289 * 20 19 18 35 35 H 1.07999 * 120.07021 * 179.71882 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5927 1.9860 -0.8321 5 6 3.5399 1.4450 -0.1466 6 1 4.1679 1.3292 0.7244 7 6 4.1105 1.5950 -1.3928 8 7 5.4150 1.5059 -1.5337 9 14 3.0306 1.9249 -2.8809 10 1 2.7599 3.3814 -2.9830 11 1 3.7260 1.4633 -4.1091 12 1 1.7474 1.1921 -2.7335 13 6 1.6610 2.1093 1.2972 14 8 2.4498 2.1364 2.2184 15 6 0.3367 2.7264 1.4462 16 6 -0.0179 3.3461 2.6507 17 6 -1.2602 3.9227 2.7863 18 6 -2.1637 3.8908 1.7303 19 8 -3.3875 4.4606 1.8699 20 6 -3.6778 5.0745 3.1272 21 6 -1.8175 3.2751 0.5302 22 9 -2.6998 3.2467 -0.4926 23 6 -0.5783 2.6901 0.3866 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.8164 1.6118 -2.4104 30 1 0.6825 3.3715 3.4724 31 1 -1.5337 4.4011 3.7152 32 1 -2.9598 5.8726 3.3162 33 1 -4.6851 5.4903 3.1046 34 1 -3.6096 4.3293 3.9197 35 1 -0.3116 2.2086 -0.5426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086992966.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:22 Heat of formation + Delta-G solvation = -95.621724 kcal Electronic energy + Delta-G solvation = -20306.680112 eV Core-core repulsion = 16991.962474 eV Total energy + Delta-G solvation = -3314.717637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.73534 -40.28998 -39.02072 -36.82925 -34.66023 -32.20840 -30.72689 -30.32061 -28.34768 -27.63055 -24.35874 -22.93750 -22.69209 -21.13496 -18.89654 -18.48685 -17.27566 -16.78176 -16.48363 -16.30576 -15.36248 -15.15403 -14.95350 -14.66232 -14.44585 -14.06675 -13.80117 -13.03618 -12.90851 -12.61960 -12.37327 -12.31488 -12.12099 -12.02101 -11.83448 -11.31680 -11.25297 -10.96494 -10.78563 -10.35386 -10.02694 -9.83777 -9.17686 -8.94757 -8.73089 -8.52154 -8.23342 -6.12049 -4.12798 0.79574 1.12937 2.85302 2.90874 3.23540 3.30108 3.33107 3.85879 4.13132 4.35089 4.55759 4.61405 4.76724 4.86705 5.01021 5.16907 5.18191 5.21148 5.38041 5.67711 5.79451 5.83192 5.92822 5.96354 6.02746 6.17046 6.36442 6.46894 6.50747 6.53221 6.70589 6.98189 7.08875 7.17250 7.56629 8.34000 8.52624 9.02242 9.47706 11.00782 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025622 B = 0.006008 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.539268 B = 4659.265728 C = 5065.702610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.108 4.108 3 C -0.022 4.022 4 H 0.052 0.948 5 C -0.508 4.508 6 H 0.087 0.913 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.865 3.135 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.406 3.594 14 O -0.447 6.447 15 C -0.164 4.164 16 C -0.038 4.038 17 C -0.199 4.199 18 C 0.113 3.887 19 O -0.309 6.309 20 C 0.025 3.975 21 C 0.052 3.948 22 F -0.133 7.133 23 C -0.071 4.071 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.265 0.735 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 4.649 6.726 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.146 4.146 3 C -0.042 4.042 4 H 0.070 0.930 5 C -0.546 4.546 6 H 0.105 0.895 7 C -0.127 4.127 8 N -0.530 5.530 9 Si 0.691 3.309 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.283 3.717 14 O -0.321 6.321 15 C -0.166 4.166 16 C -0.056 4.056 17 C -0.218 4.218 18 C 0.066 3.934 19 O -0.222 6.222 20 C -0.070 4.070 21 C 0.033 3.967 22 F -0.111 7.111 23 C -0.090 4.090 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.336 4.686 6.906 19.240 hybrid contribution -0.678 0.360 -0.897 1.181 sum -18.014 5.046 6.010 19.649 Atomic orbital electron populations 1.22359 0.98305 1.00994 1.00934 1.21709 0.92549 0.97916 1.02476 1.19620 0.99315 0.93311 0.91947 0.92984 1.20826 0.87768 1.50346 0.95624 0.89482 1.25024 0.94829 0.94452 0.98410 1.69888 1.09826 1.49248 1.24001 0.87041 0.81461 0.79388 0.82987 1.19872 1.21111 1.18539 1.22939 0.82980 0.75432 0.90389 1.90409 1.50636 1.49249 1.41778 1.20906 0.97995 1.03512 0.94158 1.21328 0.94944 0.92197 0.97156 1.21056 0.94973 1.06949 0.98785 1.19258 0.85746 0.94782 0.93574 1.86076 1.29816 1.69501 1.36787 1.23138 1.02467 0.97290 0.84068 1.16806 0.89611 1.06069 0.84253 1.91498 1.67472 1.95151 1.57023 1.21761 0.90457 0.95805 1.00990 0.93364 0.92811 0.93022 0.91371 0.92239 0.92449 0.83961 0.84232 0.92259 0.87997 0.92279 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 8.24 37.16 0.31 -2.42 16 2 C -0.11 -2.16 5.37 -26.73 -0.14 -2.31 16 3 C -0.02 -0.51 1.42 -92.93 -0.13 -0.64 16 4 H 0.05 1.14 3.90 -51.93 -0.20 0.94 16 5 C -0.51 -14.16 8.55 -34.44 -0.29 -14.46 16 6 H 0.09 2.74 7.51 -52.49 -0.39 2.35 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.86 20.52 26.98 -169.99 -4.59 15.94 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.26 -5.69 6.83 56.52 0.39 -5.31 16 13 C 0.41 8.64 5.89 -30.82 -0.18 8.46 16 14 O -0.45 -10.67 15.92 5.54 0.09 -10.58 16 15 C -0.16 -2.83 4.96 -105.06 -0.52 -3.35 16 16 C -0.04 -0.55 9.59 -39.14 -0.38 -0.93 16 17 C -0.20 -2.42 9.01 -39.52 -0.36 -2.77 16 18 C 0.11 1.53 6.70 -38.92 -0.26 1.27 16 19 O -0.31 -3.77 10.34 -18.85 -0.19 -3.97 16 20 C 0.03 0.18 9.81 101.05 0.99 1.17 16 21 C 0.05 0.80 7.30 -39.37 -0.29 0.51 16 22 F -0.13 -2.08 17.10 2.25 0.04 -2.05 16 23 C -0.07 -1.15 7.00 -39.07 -0.27 -1.42 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.84 5.27 -51.92 -0.27 0.57 16 26 H 0.05 0.79 6.51 -51.93 -0.34 0.46 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.14 1.97 7.64 -52.49 -0.40 1.57 16 31 H 0.14 1.22 6.27 -52.49 -0.33 0.89 16 32 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 35 H 0.16 2.55 4.19 -52.49 -0.22 2.33 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -31.78 292.10 -4.90 -36.68 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.79 Total: 0.62 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.63 Total: -14.86 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.77 Total: -26.18 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.11 Total: -14.55 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.59 Total: 15.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.78 -4.90 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086992966.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.944 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds