Wall clock time and date at job start Mon Mar 30 2020 07:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 H 1.08997 * 109.47268 * 305.92624 * 3 2 1 5 5 C 1.50699 * 109.47439 * 185.92061 * 3 2 1 6 6 H 1.08000 * 120.00646 * 275.19701 * 5 3 2 7 7 C 1.37881 * 119.99706 * 95.18655 * 5 3 2 8 8 N 1.31513 * 119.99850 * 184.64619 * 7 5 3 9 9 Si 1.86803 * 119.99886 * 4.65682 * 7 5 3 10 10 H 1.48492 * 109.47507 * 84.84935 * 9 7 5 11 11 H 1.48504 * 109.46624 * 204.85231 * 9 7 5 12 12 H 1.48502 * 109.46907 * 324.84909 * 9 7 5 13 13 C 1.50701 * 109.47081 * 65.92258 * 3 2 1 14 14 O 1.21303 * 119.99965 * 95.00215 * 13 3 2 15 15 C 1.46862 * 120.00478 * 274.99704 * 13 3 2 16 16 C 1.40021 * 120.10810 * 179.97438 * 15 13 3 17 17 C 1.37625 * 119.92011 * 180.02562 * 16 15 13 18 18 C 1.39009 * 120.14651 * 0.02562 * 17 16 15 19 19 O 1.35715 * 119.89097 * 179.97438 * 18 17 16 20 20 C 1.42894 * 117.00133 * 0.02562 * 19 18 17 21 21 C 1.39257 * 120.21498 * 0.02562 * 18 17 16 22 22 F 1.35102 * 119.95977 * 179.97438 * 21 18 17 23 23 C 1.37785 * 120.07136 * 0.25047 * 21 18 17 24 24 H 1.08998 * 109.47389 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.47061 * 300.00344 * 1 2 3 26 26 H 1.09005 * 109.47040 * 59.99599 * 1 2 3 27 27 H 1.09000 * 109.46818 * 239.99776 * 2 1 3 28 28 H 1.09004 * 109.46658 * 120.00023 * 2 1 3 29 29 H 0.97007 * 119.99425 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.04113 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.92513 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.47140 * 60.00364 * 20 19 18 33 33 H 1.09005 * 109.47104 * 179.97438 * 20 19 18 34 34 H 1.08994 * 109.47611 * 300.00289 * 20 19 18 35 35 H 1.07999 * 120.07021 * 179.71882 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5927 1.9860 -0.8321 5 6 3.5399 1.4450 -0.1466 6 1 4.1679 1.3292 0.7244 7 6 4.1105 1.5950 -1.3928 8 7 5.4150 1.5059 -1.5337 9 14 3.0306 1.9249 -2.8809 10 1 2.7599 3.3814 -2.9830 11 1 3.7260 1.4633 -4.1091 12 1 1.7474 1.1921 -2.7335 13 6 1.6610 2.1093 1.2972 14 8 2.4498 2.1364 2.2184 15 6 0.3367 2.7264 1.4462 16 6 -0.0179 3.3461 2.6507 17 6 -1.2602 3.9227 2.7863 18 6 -2.1637 3.8908 1.7303 19 8 -3.3875 4.4606 1.8699 20 6 -3.6778 5.0745 3.1272 21 6 -1.8175 3.2751 0.5302 22 9 -2.6998 3.2467 -0.4926 23 6 -0.5783 2.6901 0.3866 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.8164 1.6118 -2.4104 30 1 0.6825 3.3715 3.4724 31 1 -1.5337 4.4011 3.7152 32 1 -2.9598 5.8726 3.3162 33 1 -4.6851 5.4903 3.1046 34 1 -3.6096 4.3293 3.9197 35 1 -0.3116 2.2086 -0.5426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086992966.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:22 Heat of formation + Delta-G solvation = -116.094026 kcal Electronic energy + Delta-G solvation = -20307.567857 eV Core-core repulsion = 16991.962474 eV Total energy + Delta-G solvation = -3315.605383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.88299 -41.46288 -40.36509 -38.06877 -36.38281 -34.22193 -31.87626 -31.47182 -30.06421 -28.40932 -25.99797 -24.34955 -23.93494 -22.52935 -20.41870 -19.59848 -19.07584 -17.99846 -17.84140 -17.25882 -16.91065 -16.54583 -16.11488 -15.81704 -15.78324 -15.58908 -15.23099 -14.70049 -14.23712 -14.03747 -13.72348 -13.70595 -13.49842 -13.30930 -12.98415 -12.80440 -12.48285 -12.23465 -12.21491 -11.85034 -11.76602 -11.63275 -11.19195 -10.75500 -10.30908 -10.05115 -9.34705 -8.30110 -6.37033 -0.43886 0.02400 1.34981 1.35645 1.44914 1.48159 2.05868 2.33527 2.56241 2.98169 3.05383 3.26248 3.55374 3.79801 4.01561 4.21541 4.33507 4.35196 4.39595 4.41323 4.42778 4.59514 4.70015 4.73368 4.76418 4.84672 4.97768 5.12640 5.16176 5.23748 5.35875 5.43742 5.50634 5.62979 6.16045 6.25530 6.72829 6.80258 7.27448 8.87203 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025622 B = 0.006008 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.539268 B = 4659.265728 C = 5065.702610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.105 4.105 3 C -0.029 4.029 4 H 0.067 0.933 5 C -0.518 4.518 6 H 0.029 0.971 7 C 0.014 3.986 8 N -0.947 5.947 9 Si 0.931 3.069 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.225 1.225 13 C 0.408 3.592 14 O -0.491 6.491 15 C -0.189 4.189 16 C -0.032 4.032 17 C -0.183 4.183 18 C 0.129 3.871 19 O -0.321 6.321 20 C 0.011 3.989 21 C 0.039 3.961 22 F -0.137 7.137 23 C -0.068 4.068 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.268 0.732 30 H 0.146 0.854 31 H 0.181 0.819 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.885 5.767 6.761 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.144 4.144 3 C -0.048 4.048 4 H 0.085 0.915 5 C -0.555 4.555 6 H 0.047 0.953 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.753 3.247 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.148 1.148 13 C 0.288 3.712 14 O -0.368 6.368 15 C -0.190 4.190 16 C -0.051 4.051 17 C -0.201 4.201 18 C 0.081 3.919 19 O -0.234 6.234 20 C -0.083 4.083 21 C 0.019 3.981 22 F -0.116 7.116 23 C -0.086 4.086 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.198 0.802 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.539 5.803 6.957 23.366 hybrid contribution 0.552 0.079 -0.747 0.933 sum -20.986 5.882 6.210 22.662 Atomic orbital electron populations 1.22275 0.94584 1.02930 1.01916 1.21567 0.95761 0.95498 1.01525 1.19660 0.95825 0.95594 0.93750 0.91539 1.20979 0.90516 1.50117 0.93917 0.95267 1.25982 0.96238 0.94020 1.02049 1.70064 1.12320 1.51258 1.25035 0.85971 0.80736 0.80053 0.77965 1.18847 1.20970 1.14770 1.22959 0.84548 0.74607 0.89081 1.90392 1.52473 1.51227 1.42748 1.20391 0.96122 1.06258 0.96261 1.21438 0.96036 0.91471 0.96127 1.21346 0.93211 1.05606 0.99909 1.19364 0.86405 0.93150 0.92939 1.86090 1.28720 1.69116 1.39518 1.23573 1.04235 0.98015 0.82459 1.16852 0.89366 1.06910 0.84993 1.91486 1.67457 1.95260 1.57350 1.21618 0.90657 0.95920 1.00447 0.90979 0.92268 0.91646 0.92066 0.93646 0.92325 0.83673 0.80171 0.90788 0.85775 0.90571 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 8.24 71.98 0.59 -4.20 16 2 C -0.11 -4.19 5.37 30.59 0.16 -4.03 16 3 C -0.03 -1.33 1.42 -12.29 -0.02 -1.35 16 4 H 0.07 2.85 3.90 -2.39 -0.01 2.84 16 5 C -0.52 -30.39 8.55 25.60 0.22 -30.17 16 6 H 0.03 1.99 7.51 -2.91 -0.02 1.97 16 7 C 0.01 0.84 5.47 84.66 0.46 1.30 16 8 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 9 Si 0.93 42.24 26.98 68.60 1.85 44.09 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.23 -8.85 6.83 99.48 0.68 -8.17 16 13 C 0.41 17.72 5.89 27.95 0.16 17.88 16 14 O -0.49 -24.66 15.92 -3.10 -0.05 -24.71 16 15 C -0.19 -6.29 4.96 -20.15 -0.10 -6.39 16 16 C -0.03 -0.87 9.59 22.56 0.22 -0.66 16 17 C -0.18 -3.68 9.01 22.31 0.20 -3.48 16 18 C 0.13 3.00 6.70 22.70 0.15 3.15 16 19 O -0.32 -6.48 10.34 -90.36 -0.93 -7.41 16 20 C 0.01 0.10 9.81 113.37 1.11 1.21 16 21 C 0.04 1.06 7.30 22.41 0.16 1.22 16 22 F -0.14 -3.91 17.10 44.97 0.77 -3.14 16 23 C -0.07 -2.03 7.00 22.60 0.16 -1.87 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.06 1.72 5.27 -2.38 -0.01 1.71 16 26 H 0.06 1.79 6.51 -2.38 -0.02 1.77 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 30 H 0.15 3.82 7.64 -2.91 -0.02 3.80 16 31 H 0.18 2.14 6.27 -2.91 -0.02 2.12 16 32 H 0.07 0.53 7.65 -2.38 -0.02 0.52 16 33 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.08 0.51 7.65 -2.39 -0.02 0.50 16 35 H 0.16 4.65 4.19 -2.91 -0.01 4.63 16 Total: -1.00 -74.21 292.10 6.52 -67.69 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.10 Total: 10.56 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 3.49 Total: -27.37 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.30 Total: -59.71 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.98 Total: -32.12 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.77 Total: -3.14 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.85 Total: 44.09 kcal Total: -74.21 6.52 -67.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086992966.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.408 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds