Wall clock time and date at job start Mon Mar 30 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 C 1.53007 * 109.46906 * 240.00253 * 2 1 3 5 5 S 1.81401 * 109.46911 * 60.00157 * 4 2 1 6 6 C 1.52995 * 109.47083 * 120.00456 * 2 1 3 7 7 O 1.42901 * 109.47107 * 299.99723 * 6 2 1 8 8 C 1.35674 * 117.00062 * 180.02562 * 7 6 2 9 9 C 1.39314 * 119.81783 * 0.24781 * 8 7 6 10 10 C 1.36432 * 120.18227 * 180.26300 * 9 8 7 11 11 C 1.40835 * 119.81560 * 359.47198 * 10 9 8 12 12 C 1.41214 * 120.18162 * 180.30293 * 11 10 9 13 13 H 1.08001 * 119.99977 * 24.53823 * 12 11 10 14 14 C 1.39897 * 119.99713 * 204.53932 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.91647 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.92014 * 14 12 11 17 17 H 1.48492 * 109.47277 * 59.99635 * 16 14 12 18 18 H 1.48504 * 109.46921 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46900 * 299.99907 * 16 14 12 20 20 C 1.40833 * 119.64086 * 0.27678 * 11 10 9 21 21 C 1.36441 * 119.81171 * 0.02562 * 20 11 10 22 22 H 1.08997 * 109.47446 * 299.99677 * 1 2 3 23 23 H 1.08994 * 109.47254 * 59.99922 * 1 2 3 24 24 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47262 * 300.00073 * 3 2 1 27 27 H 1.09001 * 109.47105 * 60.00848 * 3 2 1 28 28 H 1.09004 * 109.46760 * 179.97438 * 4 2 1 29 29 H 1.08995 * 109.46789 * 299.99706 * 4 2 1 30 30 H 1.34503 * 102.99519 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46943 * 180.02562 * 6 2 1 32 32 H 1.08996 * 109.47273 * 59.99914 * 6 2 1 33 33 H 1.07997 * 119.90843 * 0.02879 * 9 8 7 34 34 H 1.08000 * 120.09762 * 179.74428 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.09911 * 180.02562 * 20 11 10 37 37 H 1.07992 * 119.91021 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.4353 0.1340 -2.7304 6 6 2.0400 -0.7213 1.2491 7 8 1.5637 -0.0477 2.4160 8 6 1.9287 -0.5631 3.6168 9 6 2.7371 -1.6965 3.6674 10 6 3.1042 -2.2241 4.8708 11 6 2.6727 -1.6131 6.0641 12 6 3.0533 -2.1489 7.3140 13 1 3.9508 -2.7441 7.3956 14 6 2.2678 -1.9088 8.4464 15 7 1.0303 -1.5050 8.3108 16 14 2.9853 -2.1644 10.1521 17 1 4.1590 -1.2732 10.3340 18 1 1.9570 -1.8446 11.1746 19 1 3.4100 -3.5793 10.3035 20 6 1.8600 -0.4645 6.0042 21 6 1.4967 0.0469 4.7925 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1300 -0.7208 -1.2496 29 1 1.6767 -1.7488 -1.2493 30 1 1.9527 -0.5967 -3.7341 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7490 1.2491 33 1 3.0711 -2.1610 2.7514 34 1 3.7276 -3.1052 4.9084 35 1 0.4855 -1.3388 9.0960 36 1 1.5252 0.0102 6.9146 37 1 0.8732 0.9274 4.7447 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087078121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:40 Heat of formation + Delta-G solvation = -34.680840 kcal Electronic energy + Delta-G solvation = -17699.748436 eV Core-core repulsion = 14953.886569 eV Total energy + Delta-G solvation = -2745.861866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.13266 -37.28771 -35.59989 -33.24633 -29.81025 -29.02362 -27.63814 -27.14708 -26.48562 -24.58944 -21.17803 -20.63066 -19.13338 -17.49720 -17.21307 -16.77405 -15.69495 -15.38840 -15.13788 -14.23930 -14.15754 -13.97086 -13.57248 -13.02949 -12.65691 -12.41868 -12.25589 -12.11498 -11.80073 -11.69101 -11.39285 -11.17839 -11.12305 -10.93384 -10.82837 -10.76975 -10.55714 -10.13220 -9.91880 -9.80865 -9.32023 -9.00669 -8.17386 -7.63033 -7.01413 -6.71294 -4.24589 1.39904 2.55756 2.80116 2.96416 3.08326 3.10774 3.23276 3.95460 4.03298 4.59969 4.63768 4.74406 4.99443 5.22221 5.33699 5.39723 5.66979 5.72446 5.80066 5.92973 6.03479 6.07702 6.08112 6.19508 6.24572 6.44899 6.48358 6.74122 6.99161 7.12601 7.19851 7.48061 7.56839 7.80975 8.01288 8.21692 8.46924 8.66689 8.90908 9.00119 10.23012 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.061998 B = 0.003396 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.519802 B = 8242.178560 C = 8436.975073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.140 4.140 4 C -0.059 4.059 5 S -0.230 6.230 6 C 0.082 3.918 7 O -0.319 6.319 8 C -0.006 4.006 9 C -0.168 4.168 10 C -0.199 4.199 11 C 0.088 3.912 12 C -0.465 4.465 13 H 0.075 0.925 14 C 0.076 3.924 15 N -0.799 5.799 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.133 4.133 21 C -0.120 4.120 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.280 0.720 36 H 0.125 0.875 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 2.279 -13.565 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.046 4.046 3 C -0.198 4.198 4 C -0.208 4.208 5 S -0.079 6.079 6 C 0.004 3.996 7 O -0.235 6.235 8 C -0.049 4.049 9 C -0.187 4.187 10 C -0.219 4.219 11 C 0.086 3.914 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.425 5.425 16 Si 0.732 3.268 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.153 4.153 21 C -0.139 4.139 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.171 3.039 -14.043 14.369 hybrid contribution 1.231 -1.660 0.715 2.187 sum 1.060 1.379 -13.328 13.441 Atomic orbital electron populations 1.21864 0.92955 1.02245 1.02737 1.20323 0.97403 0.96326 0.90551 1.21862 1.00792 0.94380 1.02735 1.23221 1.03246 1.01258 0.93068 1.87445 1.71780 1.44559 1.04098 1.22375 0.97765 0.95168 0.84261 1.85793 1.72431 1.53503 1.11786 1.18579 1.04497 0.98140 0.83692 1.20400 1.02882 0.97911 0.97486 1.20562 1.07846 1.01344 0.92102 1.17580 0.90995 0.90565 0.92272 1.19431 1.08587 1.29395 0.92100 0.90641 1.25867 0.93959 0.92916 1.01392 1.69821 1.06107 1.34214 1.32367 0.86393 0.79718 0.79779 0.80947 1.18892 1.20388 1.19134 1.20974 1.01978 0.96728 0.95604 1.19828 1.03000 1.00513 0.90532 0.91144 0.91696 0.92748 0.92776 0.91688 0.91164 0.89645 0.89627 0.96340 0.93167 0.93142 0.88943 0.88853 0.90874 0.85718 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.09 37.16 0.30 -1.44 16 2 C -0.05 -0.55 0.63 -154.51 -0.10 -0.65 16 3 C -0.14 -1.71 8.09 37.16 0.30 -1.41 16 4 C -0.06 -0.59 5.30 37.16 0.20 -0.39 16 5 S -0.23 -2.33 22.93 -107.50 -2.47 -4.80 16 6 C 0.08 1.24 3.60 37.16 0.13 1.38 16 7 O -0.32 -6.18 8.77 -18.72 -0.16 -6.34 16 8 C -0.01 -0.13 6.71 -38.78 -0.26 -0.39 16 9 C -0.17 -3.75 8.96 -39.83 -0.36 -4.11 16 10 C -0.20 -4.86 9.74 -39.25 -0.38 -5.25 16 11 C 0.09 2.35 5.57 -106.80 -0.60 1.75 16 12 C -0.47 -12.33 9.04 -37.83 -0.34 -12.67 16 13 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 14 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 15 N -0.80 -20.65 10.96 55.55 0.61 -20.04 16 16 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 21 C -0.12 -2.86 9.92 -39.83 -0.40 -3.26 16 22 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 23 H 0.06 0.74 6.91 -51.93 -0.36 0.38 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.73 6.91 -51.93 -0.36 0.37 16 27 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 28 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.66 9.07 97.61 0.89 1.55 16 31 H 0.05 0.74 7.63 -51.93 -0.40 0.34 16 32 H 0.05 0.75 7.66 -51.93 -0.40 0.36 16 33 H 0.09 1.78 6.27 -52.49 -0.33 1.46 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.13 3.31 6.16 -52.49 -0.32 2.99 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -27.10 313.90 -8.41 -35.51 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.16 Total: 5.74 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -1.93 Total: -28.43 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.61 Total: -20.04 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.16 Total: -6.34 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.47 Total: -4.80 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.10 -8.41 -35.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087078121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.829 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds