Wall clock time and date at job start Mon Mar 30 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 C 1.53007 * 109.46906 * 240.00253 * 2 1 3 5 5 S 1.81401 * 109.46911 * 60.00157 * 4 2 1 6 6 C 1.52995 * 109.47083 * 120.00456 * 2 1 3 7 7 O 1.42901 * 109.47107 * 299.99723 * 6 2 1 8 8 C 1.35674 * 117.00062 * 180.02562 * 7 6 2 9 9 C 1.39314 * 119.81783 * 0.24781 * 8 7 6 10 10 C 1.36432 * 120.18227 * 180.26300 * 9 8 7 11 11 C 1.40835 * 119.81560 * 359.47198 * 10 9 8 12 12 C 1.41214 * 120.18162 * 180.30293 * 11 10 9 13 13 H 1.08001 * 119.99977 * 24.53823 * 12 11 10 14 14 C 1.39897 * 119.99713 * 204.53932 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.91647 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.92014 * 14 12 11 17 17 H 1.48492 * 109.47277 * 59.99635 * 16 14 12 18 18 H 1.48504 * 109.46921 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46900 * 299.99907 * 16 14 12 20 20 C 1.40833 * 119.64086 * 0.27678 * 11 10 9 21 21 C 1.36441 * 119.81171 * 0.02562 * 20 11 10 22 22 H 1.08997 * 109.47446 * 299.99677 * 1 2 3 23 23 H 1.08994 * 109.47254 * 59.99922 * 1 2 3 24 24 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47262 * 300.00073 * 3 2 1 27 27 H 1.09001 * 109.47105 * 60.00848 * 3 2 1 28 28 H 1.09004 * 109.46760 * 179.97438 * 4 2 1 29 29 H 1.08995 * 109.46789 * 299.99706 * 4 2 1 30 30 H 1.34503 * 102.99519 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46943 * 180.02562 * 6 2 1 32 32 H 1.08996 * 109.47273 * 59.99914 * 6 2 1 33 33 H 1.07997 * 119.90843 * 0.02879 * 9 8 7 34 34 H 1.08000 * 120.09762 * 179.74428 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.09911 * 180.02562 * 20 11 10 37 37 H 1.07992 * 119.91021 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.4353 0.1340 -2.7304 6 6 2.0400 -0.7213 1.2491 7 8 1.5637 -0.0477 2.4160 8 6 1.9287 -0.5631 3.6168 9 6 2.7371 -1.6965 3.6674 10 6 3.1042 -2.2241 4.8708 11 6 2.6727 -1.6131 6.0641 12 6 3.0533 -2.1489 7.3140 13 1 3.9508 -2.7441 7.3956 14 6 2.2678 -1.9088 8.4464 15 7 1.0303 -1.5050 8.3108 16 14 2.9853 -2.1644 10.1521 17 1 4.1590 -1.2732 10.3340 18 1 1.9570 -1.8446 11.1746 19 1 3.4100 -3.5793 10.3035 20 6 1.8600 -0.4645 6.0042 21 6 1.4967 0.0469 4.7925 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1300 -0.7208 -1.2496 29 1 1.6767 -1.7488 -1.2493 30 1 1.9527 -0.5967 -3.7341 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7490 1.2491 33 1 3.0711 -2.1610 2.7514 34 1 3.7276 -3.1052 4.9084 35 1 0.4855 -1.3388 9.0960 36 1 1.5252 0.0102 6.9146 37 1 0.8732 0.9274 4.7447 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087078121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:40 Heat of formation + Delta-G solvation = -47.381841 kcal Electronic energy + Delta-G solvation = -17700.299192 eV Core-core repulsion = 14953.886569 eV Total energy + Delta-G solvation = -2746.412623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67486 -38.79158 -37.04299 -35.08776 -31.66670 -30.87993 -28.51450 -28.13368 -27.86521 -26.37199 -22.95167 -22.45183 -20.24982 -19.20419 -18.67168 -17.93662 -17.06215 -16.73151 -16.63606 -15.72589 -15.58463 -15.25836 -14.85496 -14.59809 -14.02821 -13.84228 -13.74796 -13.60120 -13.35769 -12.91049 -12.77513 -12.68080 -12.57466 -12.36001 -12.10884 -11.89271 -11.84964 -11.67975 -11.42062 -11.22267 -10.96690 -10.84043 -9.52562 -8.95096 -8.88146 -8.57195 -6.20402 0.62032 0.98817 1.06074 1.40580 1.51331 1.56086 1.82172 2.24022 2.66255 2.75660 3.70053 3.74562 3.75374 3.91595 4.26707 4.29252 4.35254 4.39621 4.55290 4.60314 4.73131 4.89926 4.95020 5.06134 5.06441 5.10517 5.20652 5.25351 5.31000 5.45439 5.47700 5.62411 5.68469 5.92751 6.08290 6.29912 6.59630 6.84630 6.97505 7.14162 8.38843 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.061998 B = 0.003396 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.519802 B = 8242.178560 C = 8436.975073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.039 4.039 3 C -0.138 4.138 4 C -0.054 4.054 5 S -0.245 6.245 6 C 0.073 3.927 7 O -0.324 6.324 8 C 0.007 3.993 9 C -0.167 4.167 10 C -0.209 4.209 11 C 0.054 3.946 12 C -0.502 4.502 13 H 0.075 0.925 14 C 0.034 3.966 15 N -0.832 5.832 16 Si 0.981 3.019 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.260 1.260 20 C -0.152 4.152 21 C -0.133 4.133 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.287 0.713 36 H 0.109 0.891 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 1.806 -14.950 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 C -0.195 4.195 4 C -0.203 4.203 5 S -0.093 6.093 6 C -0.004 4.004 7 O -0.240 6.240 8 C -0.038 4.038 9 C -0.185 4.185 10 C -0.229 4.229 11 C 0.052 3.948 12 C -0.532 4.532 13 H 0.093 0.907 14 C -0.180 4.180 15 N -0.459 5.459 16 Si 0.802 3.198 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.172 4.172 21 C -0.152 4.152 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.456 2.567 -15.458 15.677 hybrid contribution 1.000 -1.480 0.915 2.006 sum 1.456 1.088 -14.544 14.657 Atomic orbital electron populations 1.21842 0.93196 1.02349 1.02233 1.20255 0.97161 0.96258 0.90302 1.21839 1.01144 0.94321 1.02246 1.23136 1.04056 1.01383 0.91681 1.87516 1.72061 1.45043 1.04706 1.22728 0.98524 0.95693 0.83485 1.85809 1.72408 1.53947 1.11819 1.18642 1.03029 0.97443 0.84639 1.20701 1.02090 0.97604 0.98126 1.20801 1.07966 1.01747 0.92353 1.17928 0.92115 0.91313 0.93408 1.19691 1.09309 1.30951 0.93271 0.90696 1.26712 0.93962 0.92176 1.05114 1.69880 1.07240 1.34943 1.33788 0.85277 0.78939 0.79836 0.75782 1.18583 1.19336 1.18450 1.20898 1.03150 0.97273 0.95877 1.19999 1.03342 1.01135 0.90731 0.93208 0.90649 0.92349 0.92168 0.90682 0.93159 0.88274 0.88415 0.94858 0.92163 0.92457 0.85472 0.87858 0.90241 0.87338 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.09 71.98 0.58 -2.61 16 2 C -0.04 -0.85 0.63 -52.18 -0.03 -0.89 16 3 C -0.14 -3.10 8.09 71.98 0.58 -2.52 16 4 C -0.05 -0.90 5.30 71.98 0.38 -0.52 16 5 S -0.24 -4.28 22.93 -56.49 -1.30 -5.57 16 6 C 0.07 2.02 3.60 71.98 0.26 2.27 16 7 O -0.32 -12.09 8.77 -89.91 -0.79 -12.88 16 8 C 0.01 0.29 6.71 22.79 0.15 0.44 16 9 C -0.17 -7.20 8.96 22.11 0.20 -7.00 16 10 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16 11 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 12 C -0.50 -27.32 9.04 23.40 0.21 -27.11 16 13 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 14 C 0.03 1.74 5.13 85.24 0.44 2.18 16 15 N -0.83 -44.08 10.96 21.82 0.24 -43.84 16 16 Si 0.98 38.52 29.60 68.60 2.03 40.56 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 18 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 C -0.15 -8.16 8.64 22.49 0.19 -7.97 16 21 C -0.13 -6.44 9.92 22.11 0.22 -6.22 16 22 H 0.05 1.34 7.68 -2.39 -0.02 1.32 16 23 H 0.07 1.57 6.91 -2.39 -0.02 1.55 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.53 6.91 -2.39 -0.02 1.52 16 27 H 0.05 1.33 7.68 -2.39 -0.02 1.31 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.33 9.07 73.35 0.67 1.99 16 31 H 0.06 1.58 7.63 -2.38 -0.02 1.56 16 32 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 33 H 0.13 4.52 6.27 -2.91 -0.02 4.50 16 34 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 35 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 36 H 0.11 6.05 6.16 -2.91 -0.02 6.03 16 37 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -58.77 313.90 5.20 -53.57 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.73 Total: 25.25 kcal Atomic # 6 Polarization: -60.38 SS G_CDS: 3.29 Total: -57.09 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.24 Total: -43.84 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.79 Total: -12.88 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -1.30 Total: -5.57 kcal Total: -58.77 5.20 -53.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087078121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.189 kcal (2) G-P(sol) polarization free energy of solvation -58.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds