Wall clock time and date at job start Mon Mar 30 2020 07:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47340 * 2 1 4 4 H 1.08995 * 109.47251 * 305.00195 * 3 2 1 5 5 C 1.53008 * 109.47005 * 65.00402 * 3 2 1 6 6 S 1.81405 * 109.46943 * 184.99879 * 5 3 2 7 7 C 1.53005 * 109.47366 * 184.99967 * 3 2 1 8 8 O 1.42897 * 109.47198 * 175.00193 * 7 3 2 9 9 C 1.35683 * 116.99685 * 180.02562 * 8 7 3 10 10 C 1.39305 * 119.81261 * 180.02562 * 9 8 7 11 11 C 1.36441 * 120.18225 * 179.72110 * 10 9 8 12 12 C 1.40834 * 119.80994 * 0.26831 * 11 10 9 13 13 C 1.41215 * 120.17646 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00196 * 204.54801 * 13 12 11 15 15 C 1.39888 * 120.00093 * 24.55741 * 13 12 11 16 16 N 1.30881 * 120.00110 * 17.92429 * 15 13 12 17 17 Si 1.86803 * 119.99833 * 197.92928 * 15 13 12 18 18 H 1.48503 * 109.47208 * 59.99802 * 17 15 13 19 19 H 1.48511 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47221 * 299.99522 * 17 15 13 21 21 C 1.40829 * 119.64178 * 0.02562 * 12 11 10 22 22 C 1.36431 * 119.81319 * 359.97438 * 21 12 11 23 23 H 1.09004 * 109.47319 * 59.99340 * 1 2 3 24 24 H 1.08997 * 109.47791 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47039 * 300.00079 * 1 2 3 26 26 H 1.08999 * 109.46806 * 240.00220 * 2 1 3 27 27 H 1.09004 * 109.47319 * 120.00660 * 2 1 3 28 28 H 1.08998 * 109.46643 * 304.99682 * 5 3 2 29 29 H 1.08996 * 109.46969 * 64.99853 * 5 3 2 30 30 H 1.34499 * 102.99591 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46782 * 55.00173 * 7 3 2 32 32 H 1.09002 * 109.47300 * 295.00717 * 7 3 2 33 33 H 1.08000 * 119.91135 * 359.97438 * 10 9 8 34 34 H 1.07999 * 120.09455 * 180.29138 * 11 10 9 35 35 H 0.97005 * 119.99879 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.09144 * 180.02562 * 21 12 11 37 37 H 1.08003 * 119.90891 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3075 6 16 2.1098 3.8763 1.2464 7 6 3.5649 1.4442 -0.1257 8 8 4.0316 2.7898 -0.2428 9 6 5.3711 2.9687 -0.3641 10 6 5.8899 4.2562 -0.4816 11 6 7.2361 4.4452 -0.5983 12 6 8.1011 3.3338 -0.6055 13 6 9.4958 3.5206 -0.7253 14 1 10.1146 2.7287 -1.1210 15 6 10.0758 4.7310 -0.3314 16 7 9.4201 5.5452 0.4561 17 14 11.7862 5.1854 -0.9294 18 1 11.7906 5.2514 -2.4130 19 1 12.1695 6.5084 -0.3743 20 1 12.7581 4.1578 -0.4767 21 6 7.5678 2.0354 -0.4925 22 6 6.2193 1.8637 -0.3765 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5564 2.0469 1.4402 29 1 2.1409 1.6418 2.1426 30 1 1.6996 4.3427 2.4394 31 1 3.8571 0.8799 -1.0114 32 1 4.0030 0.9834 0.7596 33 1 5.2252 5.1073 -0.4762 34 1 7.6373 5.4442 -0.6846 35 1 9.8222 6.3848 0.7289 36 1 8.2245 1.1780 -0.4967 37 1 5.8086 0.8686 -0.2894 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087078125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:25 Heat of formation + Delta-G solvation = -30.913789 kcal Electronic energy + Delta-G solvation = -17679.241751 eV Core-core repulsion = 14933.543236 eV Total energy + Delta-G solvation = -2745.698515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.84805 -37.03111 -35.57150 -33.17788 -30.39213 -29.52262 -28.81747 -26.95964 -24.73855 -23.44504 -21.09497 -20.42126 -20.02617 -17.23391 -17.12866 -16.84682 -15.66611 -15.17272 -14.91370 -14.60798 -14.12705 -13.85266 -13.65235 -12.88868 -12.80149 -12.62188 -12.19824 -12.03552 -11.92952 -11.64763 -11.19437 -11.14650 -10.99886 -10.91925 -10.81521 -10.63978 -10.42770 -9.93478 -9.79043 -9.63900 -9.19363 -8.90837 -7.55873 -7.50279 -6.86557 -6.61241 -4.14198 1.85367 2.89409 3.00355 3.07996 3.13299 3.16104 3.32418 4.02440 4.12030 4.58560 4.73208 4.78266 5.03057 5.09878 5.22014 5.35998 5.55480 5.62029 5.72040 5.75194 5.81510 5.82578 5.89549 6.07956 6.21156 6.23184 6.38067 6.88831 7.09931 7.23448 7.31250 7.60328 7.68972 7.93551 8.12283 8.33252 8.60204 8.79379 9.00971 9.12245 10.32463 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039699 B = 0.004042 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.138617 B = 6926.454634 C = 7479.286338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.071 4.071 4 H 0.090 0.910 5 C -0.071 4.071 6 S -0.180 6.180 7 C 0.068 3.932 8 O -0.301 6.301 9 C 0.005 3.995 10 C -0.118 4.118 11 C -0.133 4.133 12 C 0.085 3.915 13 C -0.467 4.467 14 H 0.074 0.926 15 C 0.076 3.924 16 N -0.801 5.801 17 Si 0.905 3.095 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.198 4.198 22 C -0.173 4.173 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.279 0.721 36 H 0.091 0.909 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.632 -6.965 0.530 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.091 4.091 4 H 0.109 0.891 5 C -0.220 4.220 6 S -0.028 6.028 7 C -0.009 4.009 8 O -0.216 6.216 9 C -0.039 4.039 10 C -0.137 4.137 11 C -0.153 4.153 12 C 0.083 3.917 13 C -0.497 4.497 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.428 5.428 17 Si 0.730 3.270 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.218 4.218 22 C -0.192 4.192 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.006 0.994 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.445 -5.776 0.455 14.640 hybrid contribution 0.373 -0.606 0.984 1.215 sum -13.072 -6.382 1.439 14.618 Atomic orbital electron populations 1.21829 0.95456 1.01678 1.02112 1.21469 0.96084 0.94748 1.02854 1.21025 0.95325 0.95976 0.96769 0.89141 1.23244 1.03076 0.94071 1.01646 1.88519 1.80714 1.10130 1.23453 1.22463 0.92476 0.85598 1.00390 1.86023 1.20943 1.24827 1.89841 1.18624 0.80957 0.93989 1.10287 1.19830 0.95253 0.93157 1.05431 1.20976 0.90728 0.99803 1.03755 1.17557 0.93492 0.90586 0.90032 1.19400 0.92726 0.99403 1.38203 0.90800 1.25839 0.99648 0.95825 0.92761 1.69838 1.38616 1.09839 1.24464 0.86429 0.82221 0.78133 0.80216 1.18963 1.20485 1.19216 1.20538 0.93420 0.96793 1.11065 1.20401 0.94750 0.95584 1.08492 0.92352 0.92578 0.92631 0.90936 0.91521 0.90144 0.90305 0.99393 0.93065 0.93228 0.88423 0.85880 0.91036 0.89051 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.11 -0.98 5.40 -26.74 -0.14 -1.13 16 3 C -0.07 -0.83 2.23 -90.62 -0.20 -1.04 16 4 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 5 C -0.07 -0.83 5.61 37.16 0.21 -0.63 16 6 S -0.18 -2.77 23.14 -107.50 -2.49 -5.26 16 7 C 0.07 1.03 4.10 37.16 0.15 1.18 16 8 O -0.30 -5.93 7.28 -18.75 -0.14 -6.07 16 9 C 0.01 0.12 6.71 -38.79 -0.26 -0.14 16 10 C -0.12 -2.90 9.92 -39.83 -0.40 -3.30 16 11 C -0.13 -3.55 8.64 -39.25 -0.34 -3.89 16 12 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 13 C -0.47 -12.69 9.04 -37.83 -0.34 -13.03 16 14 H 0.07 1.93 7.91 -52.48 -0.41 1.51 16 15 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 16 N -0.80 -21.26 10.96 55.54 0.61 -20.65 16 17 Si 0.91 19.14 29.60 -169.99 -5.03 14.10 16 18 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 21 C -0.20 -4.97 9.74 -39.25 -0.38 -5.35 16 22 C -0.17 -3.96 8.96 -39.83 -0.36 -4.32 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.39 6.46 -51.93 -0.34 0.06 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.76 6.34 -51.92 -0.33 0.43 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.60 9.07 97.61 0.89 1.49 16 31 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 32 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 33 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.12 3.37 6.16 -52.49 -0.32 3.05 16 35 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.09 1.81 6.27 -52.48 -0.33 1.48 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -28.62 313.82 -8.86 -37.48 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.16 Total: 4.47 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: -2.39 Total: -28.81 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.61 Total: -20.65 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.14 Total: -6.07 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.49 Total: -5.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.62 -8.86 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087078125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.569 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds