Wall clock time and date at job start Mon Mar 30 2020 07:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47340 * 2 1 4 4 H 1.08995 * 109.47251 * 305.00195 * 3 2 1 5 5 C 1.53008 * 109.47005 * 65.00402 * 3 2 1 6 6 S 1.81405 * 109.46943 * 184.99879 * 5 3 2 7 7 C 1.53005 * 109.47366 * 184.99967 * 3 2 1 8 8 O 1.42897 * 109.47198 * 175.00193 * 7 3 2 9 9 C 1.35683 * 116.99685 * 180.02562 * 8 7 3 10 10 C 1.39305 * 119.81261 * 180.02562 * 9 8 7 11 11 C 1.36441 * 120.18225 * 179.72110 * 10 9 8 12 12 C 1.40834 * 119.80994 * 0.26831 * 11 10 9 13 13 C 1.41215 * 120.17646 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00196 * 204.54801 * 13 12 11 15 15 C 1.39888 * 120.00093 * 24.55741 * 13 12 11 16 16 N 1.30881 * 120.00110 * 17.92429 * 15 13 12 17 17 Si 1.86803 * 119.99833 * 197.92928 * 15 13 12 18 18 H 1.48503 * 109.47208 * 59.99802 * 17 15 13 19 19 H 1.48511 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47221 * 299.99522 * 17 15 13 21 21 C 1.40829 * 119.64178 * 0.02562 * 12 11 10 22 22 C 1.36431 * 119.81319 * 359.97438 * 21 12 11 23 23 H 1.09004 * 109.47319 * 59.99340 * 1 2 3 24 24 H 1.08997 * 109.47791 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47039 * 300.00079 * 1 2 3 26 26 H 1.08999 * 109.46806 * 240.00220 * 2 1 3 27 27 H 1.09004 * 109.47319 * 120.00660 * 2 1 3 28 28 H 1.08998 * 109.46643 * 304.99682 * 5 3 2 29 29 H 1.08996 * 109.46969 * 64.99853 * 5 3 2 30 30 H 1.34499 * 102.99591 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46782 * 55.00173 * 7 3 2 32 32 H 1.09002 * 109.47300 * 295.00717 * 7 3 2 33 33 H 1.08000 * 119.91135 * 359.97438 * 10 9 8 34 34 H 1.07999 * 120.09455 * 180.29138 * 11 10 9 35 35 H 0.97005 * 119.99879 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.09144 * 180.02562 * 21 12 11 37 37 H 1.08003 * 119.90891 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3075 6 16 2.1098 3.8763 1.2464 7 6 3.5649 1.4442 -0.1257 8 8 4.0316 2.7898 -0.2428 9 6 5.3711 2.9687 -0.3641 10 6 5.8899 4.2562 -0.4816 11 6 7.2361 4.4452 -0.5983 12 6 8.1011 3.3338 -0.6055 13 6 9.4958 3.5206 -0.7253 14 1 10.1146 2.7287 -1.1210 15 6 10.0758 4.7310 -0.3314 16 7 9.4201 5.5452 0.4561 17 14 11.7862 5.1854 -0.9294 18 1 11.7906 5.2514 -2.4130 19 1 12.1695 6.5084 -0.3743 20 1 12.7581 4.1578 -0.4767 21 6 7.5678 2.0354 -0.4925 22 6 6.2193 1.8637 -0.3765 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5564 2.0469 1.4402 29 1 2.1409 1.6418 2.1426 30 1 1.6996 4.3427 2.4394 31 1 3.8571 0.8799 -1.0114 32 1 4.0030 0.9834 0.7596 33 1 5.2252 5.1073 -0.4762 34 1 7.6373 5.4442 -0.6846 35 1 9.8222 6.3848 0.7289 36 1 8.2245 1.1780 -0.4967 37 1 5.8086 0.8686 -0.2894 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087078125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:24 Heat of formation + Delta-G solvation = -45.022028 kcal Electronic energy + Delta-G solvation = -17679.853530 eV Core-core repulsion = 14933.543236 eV Total energy + Delta-G solvation = -2746.310294 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46716 -38.51523 -36.89641 -35.05926 -31.73909 -31.08482 -30.55185 -28.11849 -26.55436 -24.51924 -22.73725 -22.21907 -21.15943 -19.15978 -18.49301 -18.28656 -17.05278 -16.78850 -16.17842 -15.86469 -15.64219 -15.14741 -14.84977 -14.67283 -14.05117 -13.93251 -13.66658 -13.57236 -13.30981 -12.92237 -12.76883 -12.66176 -12.50117 -12.26403 -11.91774 -11.71068 -11.62418 -11.57175 -11.43619 -11.13414 -10.85956 -10.77880 -9.45602 -8.89909 -8.66906 -8.51378 -6.15141 0.78459 1.05562 1.12028 1.40799 1.52049 1.58152 1.89407 2.25845 2.78403 2.83374 3.66475 3.79614 3.82977 4.19625 4.34506 4.35028 4.42477 4.44821 4.50445 4.59060 4.66726 4.78403 4.95935 4.96976 5.07922 5.15384 5.23596 5.31641 5.35748 5.38070 5.50628 5.69219 5.74763 5.99803 6.13822 6.36092 6.65863 6.93055 7.02129 7.24017 8.42981 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039699 B = 0.004042 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.138617 B = 6926.454634 C = 7479.286338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.063 4.063 4 H 0.085 0.915 5 C -0.057 4.057 6 S -0.248 6.248 7 C 0.055 3.945 8 O -0.304 6.304 9 C 0.020 3.980 10 C -0.132 4.132 11 C -0.152 4.152 12 C 0.051 3.949 13 C -0.504 4.504 14 H 0.074 0.926 15 C 0.033 3.967 16 N -0.835 5.835 17 Si 0.980 3.020 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.260 1.260 21 C -0.208 4.208 22 C -0.172 4.172 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.285 0.715 36 H 0.101 0.899 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 -8.665 0.615 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.083 4.083 4 H 0.104 0.896 5 C -0.205 4.205 6 S -0.096 6.096 7 C -0.021 4.021 8 O -0.219 6.219 9 C -0.025 4.025 10 C -0.150 4.150 11 C -0.171 4.171 12 C 0.049 3.951 13 C -0.535 4.535 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.462 5.462 17 Si 0.801 3.199 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.184 1.184 21 C -0.227 4.227 22 C -0.191 4.191 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.562 -7.494 0.545 16.387 hybrid contribution 0.494 -0.179 1.003 1.133 sum -14.068 -7.673 1.549 16.099 Atomic orbital electron populations 1.21827 0.94181 1.02642 1.02309 1.21462 0.97063 0.92301 1.03673 1.21045 0.92574 0.98034 0.96601 0.89638 1.23355 1.04867 0.90438 1.01856 1.88754 1.81544 1.14424 1.24852 1.22878 0.94908 0.83387 1.00913 1.86079 1.18676 1.27955 1.89234 1.18680 0.82690 0.93351 1.07770 1.19947 0.94733 0.94545 1.05822 1.20884 0.91692 0.99107 1.05458 1.17896 0.94092 0.91684 0.91429 1.19662 0.93127 1.00705 1.39976 0.90834 1.26702 1.03898 0.95187 0.92222 1.69905 1.40624 1.10381 1.25297 0.85290 0.76856 0.78175 0.79553 1.18600 1.19431 1.18423 1.20780 0.94739 0.96359 1.10857 1.20698 0.93878 0.97237 1.07276 0.92449 0.91287 0.92185 0.90329 0.90581 0.87344 0.89599 0.97738 0.92221 0.92803 0.87827 0.87652 0.90437 0.88051 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.98 16 2 C -0.11 -1.46 5.40 30.59 0.17 -1.29 16 3 C -0.06 -1.29 2.23 -10.79 -0.02 -1.32 16 4 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.06 -1.17 5.61 71.98 0.40 -0.77 16 6 S -0.25 -7.39 23.14 -56.49 -1.31 -8.70 16 7 C 0.06 1.55 4.10 71.98 0.30 1.84 16 8 O -0.30 -11.61 7.28 -90.01 -0.66 -12.26 16 9 C 0.02 0.90 6.71 22.79 0.15 1.05 16 10 C -0.13 -6.62 9.92 22.11 0.22 -6.40 16 11 C -0.15 -8.41 8.64 22.49 0.19 -8.22 16 12 C 0.05 2.86 5.57 -21.28 -0.12 2.74 16 13 C -0.50 -28.20 9.04 23.40 0.21 -27.99 16 14 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 15 C 0.03 1.74 5.13 85.23 0.44 2.17 16 16 N -0.83 -45.63 10.96 21.82 0.24 -45.39 16 17 Si 0.98 39.68 29.60 68.60 2.03 41.71 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 21 C -0.21 -10.44 9.74 22.48 0.22 -10.22 16 22 C -0.17 -7.66 8.96 22.11 0.20 -7.47 16 23 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.61 6.46 -2.38 -0.02 0.60 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.11 1.67 6.34 -2.39 -0.02 1.66 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.62 9.07 73.35 0.67 2.28 16 31 H 0.06 1.59 7.63 -2.38 -0.02 1.58 16 32 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 33 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.11 6.09 6.16 -2.91 -0.02 6.07 16 35 H 0.29 14.18 8.30 -92.70 -0.77 13.41 16 36 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 37 H 0.13 4.64 6.27 -2.91 -0.02 4.63 16 Total: -1.00 -63.31 313.82 5.09 -58.22 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.73 Total: 23.27 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 3.05 Total: -56.85 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.24 Total: -45.39 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.66 Total: -12.26 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.31 Total: -8.70 kcal Total: -63.31 5.09 -58.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087078125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.202 kcal (2) G-P(sol) polarization free energy of solvation -63.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds