Wall clock time and date at job start Mon Mar 30 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47354 * 2 1 4 4 C 1.53003 * 109.46722 * 120.00333 * 2 1 3 5 5 O 1.42898 * 109.46738 * 294.99366 * 4 2 1 6 6 C 1.53005 * 109.47126 * 239.99593 * 2 1 3 7 7 S 1.81405 * 109.46831 * 65.00540 * 6 2 1 8 8 C 1.81402 * 102.99751 * 179.97438 * 7 6 2 9 9 H 1.08995 * 109.46993 * 304.99719 * 8 7 6 10 10 C 1.50697 * 109.46985 * 64.99992 * 8 7 6 11 11 H 1.07998 * 120.00502 * 54.85123 * 10 8 7 12 12 C 1.37881 * 119.99744 * 234.84663 * 10 8 7 13 13 N 1.31518 * 119.99929 * 184.77810 * 12 10 8 14 14 Si 1.86798 * 120.00162 * 4.77806 * 12 10 8 15 15 H 1.48496 * 109.47150 * 84.67162 * 14 12 10 16 16 H 1.48501 * 109.47108 * 204.67549 * 14 12 10 17 17 H 1.48509 * 109.46939 * 324.67378 * 14 12 10 18 18 C 1.50705 * 109.46625 * 184.99974 * 8 7 6 19 19 C 1.38228 * 119.99978 * 304.67106 * 18 8 7 20 20 C 1.38242 * 120.00024 * 179.81230 * 19 18 8 21 21 C 1.38236 * 119.99401 * 0.39911 * 20 19 18 22 22 C 1.38235 * 120.00560 * 359.85820 * 21 20 19 23 23 C 1.38234 * 119.99663 * 359.95414 * 22 21 20 24 24 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46996 * 300.00552 * 1 2 3 26 26 H 1.09008 * 109.46472 * 60.00180 * 1 2 3 27 27 H 1.08999 * 109.46910 * 174.99971 * 4 2 1 28 28 H 1.08995 * 109.47436 * 54.99616 * 4 2 1 29 29 H 0.96701 * 114.00102 * 180.02562 * 5 4 2 30 30 H 1.09000 * 109.46712 * 185.00190 * 6 2 1 31 31 H 1.09000 * 109.47351 * 305.00477 * 6 2 1 32 32 H 0.97000 * 119.99864 * 180.02562 * 13 12 10 33 33 H 1.07998 * 120.00526 * 0.02562 * 19 18 8 34 34 H 1.07991 * 120.00119 * 180.23139 * 20 19 18 35 35 H 1.08002 * 119.99730 * 179.83012 * 21 20 19 36 36 H 1.07995 * 120.00371 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00306 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2493 5 8 1.6619 0.0167 2.4130 6 6 2.0400 -0.7214 -1.2492 7 16 1.5602 0.2156 -2.7266 8 6 2.2432 -0.7799 -4.0807 9 1 3.3103 -0.9308 -3.9182 10 6 1.5474 -2.1160 -4.1223 11 1 0.4706 -2.1622 -4.1924 12 6 2.2854 -3.2795 -4.0709 13 7 1.6877 -4.4436 -4.2017 14 14 4.1342 -3.2023 -3.8155 15 1 4.4299 -3.1104 -2.3632 16 1 4.7624 -4.4273 -4.3722 17 1 4.6802 -2.0075 -4.5083 18 6 2.0308 -0.0618 -5.3885 19 6 0.7589 0.3275 -5.7646 20 6 0.5646 0.9896 -6.9625 21 6 1.6412 1.2550 -7.7880 22 6 2.9124 0.8609 -7.4144 23 6 3.1072 0.2023 -6.2147 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 3.1262 -0.7996 1.2056 28 1 1.6053 -1.7198 1.2952 29 1 1.9531 -0.3829 3.2440 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7199 -1.2952 32 1 2.2069 -5.2622 -4.1652 33 1 -0.0826 0.1175 -5.1211 34 1 -0.4285 1.2971 -7.2546 35 1 1.4891 1.7698 -8.7251 36 1 3.7534 1.0679 -8.0595 37 1 4.1004 -0.1053 -5.9225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091256259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:11 Heat of formation + Delta-G solvation = -48.060778 kcal Electronic energy + Delta-G solvation = -17790.405711 eV Core-core repulsion = 15043.963647 eV Total energy + Delta-G solvation = -2746.442064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.53607 -37.41916 -34.15350 -33.75696 -31.60556 -30.24758 -27.88297 -26.65859 -25.71028 -23.19264 -21.94833 -20.53809 -19.82088 -17.36495 -17.20047 -16.20840 -15.52860 -15.17318 -14.84109 -14.54537 -14.36656 -13.64524 -13.52471 -13.05055 -12.82529 -12.76115 -12.40330 -12.25369 -12.11737 -11.77509 -11.26301 -11.04313 -10.91326 -10.78506 -10.57698 -10.44279 -10.34662 -10.08610 -9.88018 -9.70725 -9.03245 -8.78314 -8.26781 -7.87948 -6.61427 -6.41628 -4.35197 1.95266 2.06284 2.82342 3.03488 3.12550 3.14971 3.68791 4.10264 4.38687 4.57578 5.00580 5.09985 5.26547 5.36674 5.48194 5.51379 5.64806 5.70024 5.70829 5.87206 5.95610 6.13229 6.18956 6.21991 6.26318 6.32586 6.38805 6.63104 6.63799 6.71778 6.74311 7.08028 7.14333 7.20926 7.43604 7.64882 7.67710 8.14198 8.68549 9.15286 10.67998 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.006982 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.137994 B = 4009.563115 C = 5027.634312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 H 0.078 0.922 4 C 0.082 3.918 5 O -0.572 6.572 6 C -0.064 4.064 7 S -0.334 6.334 8 C 0.095 3.905 9 H 0.059 0.941 10 C -0.484 4.484 11 H 0.090 0.910 12 C 0.081 3.919 13 N -0.871 5.871 14 Si 0.864 3.136 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.260 1.260 18 C -0.019 4.019 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.375 0.625 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.271 0.729 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 6.959 3.868 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 H 0.097 0.903 4 C 0.003 3.997 5 O -0.377 6.377 6 C -0.213 4.213 7 S -0.099 6.099 8 C -0.030 4.030 9 H 0.077 0.923 10 C -0.526 4.526 11 H 0.108 0.892 12 C -0.127 4.127 13 N -0.506 5.506 14 Si 0.691 3.309 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.185 1.185 18 C -0.022 4.022 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.163 4.163 22 C -0.142 4.142 23 C -0.147 4.147 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.221 0.779 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.412 8.141 3.408 8.938 hybrid contribution 2.005 -1.857 0.492 2.777 sum 3.418 6.284 3.900 8.148 Atomic orbital electron populations 1.21774 0.93978 1.02050 1.01960 1.20849 0.97434 0.99865 0.90980 0.90324 1.22268 0.97813 0.94325 0.85290 1.86471 1.81602 1.53408 1.16251 1.22990 1.02027 1.02375 0.93863 1.86167 1.79718 1.40039 1.04025 1.20202 0.98601 0.95919 0.88324 0.92270 1.21081 0.95929 0.86490 1.49125 0.89218 1.25134 0.98339 0.95307 0.93938 1.69868 1.36642 0.97759 1.46324 0.87020 0.86148 0.78325 0.79415 1.19549 1.20645 1.18468 1.19857 0.93063 0.93288 0.96019 1.21006 0.97212 0.97311 0.96126 1.21048 0.98243 0.99930 0.95022 1.20903 0.93142 1.02574 0.99638 1.20929 0.96800 0.99794 0.96646 1.20959 0.98409 1.00170 0.95127 0.92853 0.92783 0.91272 0.93855 0.93358 0.77939 0.91764 0.89250 0.91908 0.85807 0.86919 0.87159 0.87025 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.92 37.16 0.33 -1.92 16 2 C -0.07 -1.16 2.62 -90.61 -0.24 -1.40 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.08 1.13 6.43 37.16 0.24 1.37 16 5 O -0.57 -7.34 13.19 -35.23 -0.46 -7.80 16 6 C -0.06 -1.21 5.17 37.16 0.19 -1.02 16 7 S -0.33 -6.99 19.32 -107.50 -2.08 -9.07 16 8 C 0.09 2.18 2.37 -29.03 -0.07 2.11 16 9 H 0.06 1.38 4.26 -51.93 -0.22 1.15 16 10 C -0.48 -12.61 8.23 -34.44 -0.28 -12.89 16 11 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 12 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.87 -24.53 13.96 55.43 0.77 -23.76 16 14 Si 0.86 19.80 27.24 -169.99 -4.63 15.17 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.26 -5.73 6.39 56.52 0.36 -5.37 16 18 C -0.02 -0.42 4.77 -104.62 -0.50 -0.92 16 19 C -0.10 -1.98 8.90 -39.58 -0.35 -2.33 16 20 C -0.12 -2.17 10.05 -39.58 -0.40 -2.56 16 21 C -0.14 -2.34 10.05 -39.58 -0.40 -2.74 16 22 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 23 C -0.13 -2.50 9.67 -39.58 -0.38 -2.89 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.81 7.82 -51.93 -0.41 0.41 16 26 H 0.07 1.18 7.13 -51.92 -0.37 0.81 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.37 2.92 9.12 45.56 0.42 3.34 16 30 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 31 H 0.09 1.85 8.00 -51.92 -0.42 1.43 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.12 2.57 7.90 -52.49 -0.41 2.16 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 2.12 7.95 -52.49 -0.42 1.70 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -28.72 320.45 -8.73 -37.46 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.81 Total: 8.83 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.35 Total: -25.65 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.77 Total: -23.76 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.46 Total: -7.80 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.63 Total: 15.17 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -2.08 Total: -9.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.72 -8.73 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091256259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.604 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds