Wall clock time and date at job start Mon Mar 30 2020 07:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47354 * 2 1 4 4 C 1.53003 * 109.46722 * 120.00333 * 2 1 3 5 5 O 1.42898 * 109.46738 * 294.99366 * 4 2 1 6 6 C 1.53005 * 109.47126 * 239.99593 * 2 1 3 7 7 S 1.81405 * 109.46831 * 65.00540 * 6 2 1 8 8 C 1.81402 * 102.99751 * 179.97438 * 7 6 2 9 9 H 1.08995 * 109.46993 * 304.99719 * 8 7 6 10 10 C 1.50697 * 109.46985 * 64.99992 * 8 7 6 11 11 H 1.07998 * 120.00502 * 54.85123 * 10 8 7 12 12 C 1.37881 * 119.99744 * 234.84663 * 10 8 7 13 13 N 1.31518 * 119.99929 * 184.77810 * 12 10 8 14 14 Si 1.86798 * 120.00162 * 4.77806 * 12 10 8 15 15 H 1.48496 * 109.47150 * 84.67162 * 14 12 10 16 16 H 1.48501 * 109.47108 * 204.67549 * 14 12 10 17 17 H 1.48509 * 109.46939 * 324.67378 * 14 12 10 18 18 C 1.50705 * 109.46625 * 184.99974 * 8 7 6 19 19 C 1.38228 * 119.99978 * 304.67106 * 18 8 7 20 20 C 1.38242 * 120.00024 * 179.81230 * 19 18 8 21 21 C 1.38236 * 119.99401 * 0.39911 * 20 19 18 22 22 C 1.38235 * 120.00560 * 359.85820 * 21 20 19 23 23 C 1.38234 * 119.99663 * 359.95414 * 22 21 20 24 24 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46996 * 300.00552 * 1 2 3 26 26 H 1.09008 * 109.46472 * 60.00180 * 1 2 3 27 27 H 1.08999 * 109.46910 * 174.99971 * 4 2 1 28 28 H 1.08995 * 109.47436 * 54.99616 * 4 2 1 29 29 H 0.96701 * 114.00102 * 180.02562 * 5 4 2 30 30 H 1.09000 * 109.46712 * 185.00190 * 6 2 1 31 31 H 1.09000 * 109.47351 * 305.00477 * 6 2 1 32 32 H 0.97000 * 119.99864 * 180.02562 * 13 12 10 33 33 H 1.07998 * 120.00526 * 0.02562 * 19 18 8 34 34 H 1.07991 * 120.00119 * 180.23139 * 20 19 18 35 35 H 1.08002 * 119.99730 * 179.83012 * 21 20 19 36 36 H 1.07995 * 120.00371 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00306 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2493 5 8 1.6619 0.0167 2.4130 6 6 2.0400 -0.7214 -1.2492 7 16 1.5602 0.2156 -2.7266 8 6 2.2432 -0.7799 -4.0807 9 1 3.3103 -0.9308 -3.9182 10 6 1.5474 -2.1160 -4.1223 11 1 0.4706 -2.1622 -4.1924 12 6 2.2854 -3.2795 -4.0709 13 7 1.6877 -4.4436 -4.2017 14 14 4.1342 -3.2023 -3.8155 15 1 4.4299 -3.1104 -2.3632 16 1 4.7624 -4.4273 -4.3722 17 1 4.6802 -2.0075 -4.5083 18 6 2.0308 -0.0618 -5.3885 19 6 0.7589 0.3275 -5.7646 20 6 0.5646 0.9896 -6.9625 21 6 1.6412 1.2550 -7.7880 22 6 2.9124 0.8609 -7.4144 23 6 3.1072 0.2023 -6.2147 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 3.1262 -0.7996 1.2056 28 1 1.6053 -1.7198 1.2952 29 1 1.9531 -0.3829 3.2440 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7199 -1.2952 32 1 2.2069 -5.2622 -4.1652 33 1 -0.0826 0.1175 -5.1211 34 1 -0.4285 1.2971 -7.2546 35 1 1.4891 1.7698 -8.7251 36 1 3.7534 1.0679 -8.0595 37 1 4.1004 -0.1053 -5.9225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091256259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:10 Heat of formation + Delta-G solvation = -65.113659 kcal Electronic energy + Delta-G solvation = -17791.145179 eV Core-core repulsion = 15043.963647 eV Total energy + Delta-G solvation = -2747.181532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99285 -38.53892 -35.62929 -35.36594 -33.36893 -31.67156 -29.57607 -28.11254 -26.91538 -25.00808 -23.39127 -22.05142 -21.17855 -19.20114 -18.42137 -17.61429 -17.07452 -16.70706 -16.34405 -15.97019 -15.89485 -15.09109 -14.91823 -14.76817 -14.28551 -14.18293 -13.98313 -13.85464 -13.40669 -13.37065 -12.95627 -12.65144 -12.28216 -12.20978 -12.09500 -11.96884 -11.84839 -11.73152 -11.49234 -10.91416 -10.87606 -10.61663 -9.69921 -9.38692 -8.45595 -8.32397 -6.42441 0.46445 0.62360 1.20202 1.24612 1.26263 1.33740 1.97297 2.19309 3.01428 3.10540 3.33860 3.80377 3.97020 4.05581 4.15978 4.17787 4.29271 4.38740 4.39273 4.44481 4.55984 4.61808 4.78127 4.79474 4.85235 4.85289 5.05042 5.14087 5.26056 5.28331 5.32892 5.37350 5.67715 5.71174 5.88566 6.11988 6.26560 6.55793 6.90016 7.11802 8.70421 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.006982 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.137994 B = 4009.563115 C = 5027.634312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 H 0.078 0.922 4 C 0.089 3.911 5 O -0.584 6.584 6 C -0.059 4.059 7 S -0.327 6.327 8 C 0.098 3.902 9 H 0.057 0.943 10 C -0.488 4.488 11 H 0.044 0.956 12 C 0.032 3.968 13 N -0.923 5.923 14 Si 0.917 3.083 15 H -0.256 1.256 16 H -0.279 1.279 17 H -0.245 1.245 18 C -0.054 4.054 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.133 4.133 22 C -0.118 4.118 23 C -0.144 4.144 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.398 0.602 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.272 0.728 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 8.870 3.505 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 H 0.096 0.904 4 C 0.010 3.990 5 O -0.392 6.392 6 C -0.208 4.208 7 S -0.093 6.093 8 C -0.028 4.028 9 H 0.075 0.925 10 C -0.529 4.529 11 H 0.062 0.938 12 C -0.171 4.171 13 N -0.561 5.561 14 Si 0.740 3.260 15 H -0.180 1.180 16 H -0.205 1.205 17 H -0.169 1.169 18 C -0.056 4.056 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.136 4.136 23 C -0.163 4.163 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.248 0.752 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.068 10.057 3.062 10.952 hybrid contribution 1.372 -2.304 0.592 2.746 sum 4.440 7.753 3.654 9.653 Atomic orbital electron populations 1.21712 0.94146 1.01622 1.01769 1.20805 0.97252 0.99715 0.91046 0.90411 1.22081 0.98487 0.93874 0.84582 1.86403 1.81909 1.53784 1.17115 1.23061 1.02432 1.01188 0.94113 1.86078 1.80024 1.39069 1.04170 1.20100 0.97838 0.94876 0.89997 0.92451 1.20994 0.93948 0.88557 1.49409 0.93801 1.25830 1.02819 0.94687 0.93738 1.69997 1.38450 0.98533 1.49082 0.86165 0.80735 0.78783 0.80274 1.18004 1.20455 1.16911 1.19885 0.94432 0.95419 0.95892 1.20995 0.96274 0.99080 0.97628 1.21390 1.00333 0.98694 0.93821 1.21406 0.92204 1.01045 1.00506 1.21367 0.98514 0.97989 0.95731 1.21156 0.97950 1.01040 0.96165 0.93405 0.91427 0.92894 0.92459 0.93036 0.75208 0.90937 0.91474 0.91865 0.87903 0.84208 0.82962 0.83336 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.92 71.98 0.64 -3.68 16 2 C -0.07 -2.16 2.62 -10.79 -0.03 -2.19 16 3 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.09 2.28 6.43 71.98 0.46 2.74 16 5 O -0.58 -13.49 13.19 -148.98 -1.97 -15.46 16 6 C -0.06 -2.25 5.17 71.98 0.37 -1.88 16 7 S -0.33 -13.96 19.32 -56.49 -1.09 -15.05 16 8 C 0.10 4.60 2.37 29.10 0.07 4.67 16 9 H 0.06 2.66 4.26 -2.39 -0.01 2.65 16 10 C -0.49 -26.69 8.23 25.60 0.21 -26.48 16 11 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 12 C 0.03 1.76 5.47 84.65 0.46 2.23 16 13 N -0.92 -54.43 13.96 21.45 0.30 -54.13 16 14 Si 0.92 40.97 27.24 68.60 1.87 42.84 16 15 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.24 -10.26 6.39 99.48 0.64 -9.62 16 18 C -0.05 -2.34 4.77 -19.87 -0.09 -2.43 16 19 C -0.12 -4.97 8.90 22.27 0.20 -4.77 16 20 C -0.12 -4.10 10.05 22.27 0.22 -3.87 16 21 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 22 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 23 C -0.14 -5.45 9.67 22.27 0.22 -5.23 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.96 7.82 -2.39 -0.02 1.94 16 26 H 0.05 1.84 7.13 -2.38 -0.02 1.82 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.40 5.07 9.12 -74.06 -0.68 4.39 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.85 8.00 -2.39 -0.02 2.83 16 32 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.10 4.53 7.90 -2.91 -0.02 4.51 16 34 H 0.14 3.74 8.06 -2.92 -0.02 3.72 16 35 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 36 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.12 4.18 7.95 -2.91 -0.02 4.15 16 Total: -1.00 -64.94 320.45 2.59 -62.34 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.30 Total: 27.33 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 3.18 Total: -47.87 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.30 Total: -54.13 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.97 Total: -15.46 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.87 Total: 42.84 kcal Atomic # 16 Polarization: -13.96 SS G_CDS: -1.09 Total: -15.05 kcal Total: -64.94 2.59 -62.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091256259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.770 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds