Wall clock time and date at job start Mon Mar 30 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46783 * 2 1 4 4 C 1.52998 * 109.47404 * 239.99893 * 2 1 3 5 5 O 1.42898 * 109.47221 * 65.00111 * 4 2 1 6 6 C 1.53005 * 109.46983 * 119.99644 * 2 1 3 7 7 S 1.81401 * 109.47055 * 295.00017 * 6 2 1 8 8 C 1.81395 * 102.99696 * 179.97438 * 7 6 2 9 9 H 1.09008 * 109.47457 * 305.00024 * 8 7 6 10 10 C 1.50695 * 109.47529 * 65.00420 * 8 7 6 11 11 H 1.08003 * 119.99809 * 29.20443 * 10 8 7 12 12 C 1.37880 * 120.00476 * 209.21190 * 10 8 7 13 13 N 1.31514 * 119.99758 * 6.76564 * 12 10 8 14 14 Si 1.86798 * 120.00033 * 186.76184 * 12 10 8 15 15 H 1.48498 * 109.47044 * 60.00594 * 14 12 10 16 16 H 1.48499 * 109.46963 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47272 * 300.00115 * 14 12 10 18 18 C 1.50699 * 109.47285 * 185.00450 * 8 7 6 19 19 C 1.38237 * 119.99810 * 301.12026 * 18 8 7 20 20 C 1.38237 * 120.00201 * 179.78785 * 19 18 8 21 21 C 1.38237 * 119.99595 * 0.43763 * 20 19 18 22 22 C 1.38231 * 120.00236 * 359.81316 * 21 20 19 23 23 C 1.38230 * 120.00097 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47164 * 300.00169 * 1 2 3 25 25 H 1.09005 * 109.46663 * 60.00364 * 1 2 3 26 26 H 1.09001 * 109.46783 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47205 * 305.00048 * 4 2 1 28 28 H 1.09002 * 109.47159 * 184.99916 * 4 2 1 29 29 H 0.96703 * 114.00314 * 180.02562 * 5 4 2 30 30 H 1.08995 * 109.47041 * 55.00553 * 6 2 1 31 31 H 1.09002 * 109.46925 * 175.00240 * 6 2 1 32 32 H 0.96998 * 120.00029 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.00169 * 359.97438 * 19 18 8 34 34 H 1.07998 * 120.00142 * 180.27360 * 20 19 18 35 35 H 1.07999 * 119.99593 * 179.83703 * 21 20 19 36 36 H 1.07996 * 119.99833 * 180.02562 * 22 21 20 37 37 H 1.07993 * 120.00218 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6621 0.0167 -2.4130 6 6 2.0400 -0.7212 1.2493 7 16 1.5601 0.2158 2.7266 8 6 2.2416 -0.7803 4.0808 9 1 1.8699 -1.8021 4.0031 10 6 3.7460 -0.7852 3.9930 11 1 4.2646 0.0591 3.5631 12 6 4.4605 -1.8674 4.4614 13 7 3.8286 -2.9491 4.8616 14 14 6.3260 -1.7971 4.5276 15 1 6.7483 -0.6795 5.4096 16 1 6.8508 -3.0775 5.0663 17 1 6.8619 -1.5781 3.1602 18 6 1.8174 -0.1906 5.4011 19 6 2.1553 1.1122 5.7166 20 6 1.7624 1.6547 6.9258 21 6 1.0394 0.8914 7.8234 22 6 0.7060 -0.4130 7.5101 23 6 1.0951 -0.9540 6.2991 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 1.9527 -0.3834 -3.2441 30 1 1.6055 -1.7197 1.2952 31 1 3.1263 -0.7994 1.2057 32 1 4.3313 -3.7106 5.1908 33 1 2.7236 1.7073 5.0170 34 1 2.0225 2.6740 7.1704 35 1 0.7348 1.3144 8.7692 36 1 0.1409 -1.0091 8.2112 37 1 0.8350 -1.9732 6.0545 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091256261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:13 Heat of formation + Delta-G solvation = -51.143727 kcal Electronic energy + Delta-G solvation = -17678.964805 eV Core-core repulsion = 14932.389054 eV Total energy + Delta-G solvation = -2746.575751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.31580 -37.41964 -34.15536 -33.71948 -31.10607 -30.04563 -27.46485 -26.57427 -25.70025 -23.45699 -21.68375 -20.55475 -19.80784 -17.34253 -16.65648 -15.95667 -15.54486 -15.13523 -14.74766 -14.38553 -14.18240 -13.67541 -13.51530 -12.85760 -12.73695 -12.60545 -12.26166 -12.10458 -11.82237 -11.60712 -11.12432 -11.06905 -10.85464 -10.77960 -10.55990 -10.35405 -10.21296 -10.18212 -9.87819 -9.57595 -8.76606 -8.68970 -8.07528 -7.67718 -6.70208 -6.18864 -4.31637 2.13834 2.25767 2.92602 3.19433 3.24744 3.27802 3.83257 4.25178 4.39978 4.80084 5.06969 5.09639 5.27268 5.36958 5.63517 5.66780 5.71507 5.76559 5.81655 5.92901 6.11005 6.13854 6.27290 6.38628 6.40992 6.47033 6.60863 6.63889 6.77173 6.87018 7.09646 7.27453 7.34538 7.63043 7.65197 7.70772 7.83454 7.98040 8.71742 9.28962 10.77896 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.006837 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.397005 B = 4094.419658 C = 5447.091237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.081 0.919 4 C 0.083 3.917 5 O -0.573 6.573 6 C -0.060 4.060 7 S -0.322 6.322 8 C 0.128 3.872 9 H 0.077 0.923 10 C -0.510 4.510 11 H 0.069 0.931 12 C 0.074 3.926 13 N -0.877 5.877 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.014 4.014 19 C -0.102 4.102 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.109 4.109 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.375 0.625 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.267 0.733 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 2.711 -4.947 6.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 H 0.099 0.901 4 C 0.004 3.996 5 O -0.378 6.378 6 C -0.209 4.209 7 S -0.089 6.089 8 C 0.002 3.998 9 H 0.096 0.904 10 C -0.550 4.550 11 H 0.087 0.913 12 C -0.133 4.133 13 N -0.513 5.513 14 Si 0.723 3.277 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.017 4.017 19 C -0.121 4.121 20 C -0.150 4.150 21 C -0.166 4.166 22 C -0.148 4.148 23 C -0.128 4.128 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.221 0.779 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.817 3.861 -4.411 7.588 hybrid contribution 2.163 -1.712 -0.178 2.764 sum -2.654 2.149 -4.590 5.721 Atomic orbital electron populations 1.21791 0.94370 1.01636 1.02029 1.20877 0.96977 1.00292 0.91197 0.90081 1.22262 0.98105 0.94026 0.85220 1.86472 1.81611 1.53452 1.16278 1.22961 1.04020 1.00268 0.93658 1.86056 1.75585 1.43294 1.03965 1.19882 0.97914 0.95999 0.86027 0.90446 1.21158 0.88987 1.03661 1.41145 0.91289 1.25051 0.99034 0.94789 0.94425 1.69891 1.36252 1.03958 1.41225 0.86564 0.84766 0.77616 0.78732 1.19783 1.21079 1.19967 1.20040 0.92194 0.92879 0.96588 1.20990 0.99267 0.95606 0.96269 1.20984 0.99992 0.99187 0.94858 1.20847 1.01615 0.94957 0.99201 1.20951 1.01328 0.95460 0.97014 1.20994 0.98242 0.99597 0.94007 0.91408 0.92693 0.93212 0.93646 0.93517 0.77939 0.91096 0.89816 0.92310 0.86318 0.87353 0.87536 0.87340 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.92 37.16 0.33 -1.79 16 2 C -0.07 -1.17 2.62 -90.62 -0.24 -1.40 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 4 C 0.08 1.10 6.43 37.16 0.24 1.34 16 5 O -0.57 -7.19 13.19 -35.23 -0.46 -7.65 16 6 C -0.06 -1.12 5.17 37.16 0.19 -0.93 16 7 S -0.32 -6.79 19.51 -107.50 -2.10 -8.88 16 8 C 0.13 3.08 2.48 -29.04 -0.07 3.00 16 9 H 0.08 2.03 7.12 -51.92 -0.37 1.66 16 10 C -0.51 -13.08 7.60 -34.44 -0.26 -13.34 16 11 H 0.07 1.79 7.82 -52.48 -0.41 1.38 16 12 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 13 N -0.88 -23.64 12.85 55.43 0.71 -22.93 16 14 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C -0.01 -0.32 4.77 -104.62 -0.50 -0.82 16 19 C -0.10 -2.18 8.88 -39.58 -0.35 -2.53 16 20 C -0.13 -2.46 10.05 -39.58 -0.40 -2.85 16 21 C -0.15 -2.61 10.05 -39.58 -0.40 -3.00 16 22 C -0.13 -2.41 10.05 -39.59 -0.40 -2.80 16 23 C -0.11 -2.33 9.67 -39.58 -0.38 -2.71 16 24 H 0.07 1.09 7.13 -51.93 -0.37 0.72 16 25 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.37 2.82 9.12 45.56 0.42 3.24 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.64 8.00 -51.92 -0.42 1.23 16 32 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.12 2.54 8.03 -52.49 -0.42 2.12 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 2.47 7.95 -52.49 -0.42 2.06 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -28.13 324.74 -9.22 -37.36 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.91 Total: 7.82 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -2.33 Total: -26.03 kcal Atomic # 7 Polarization: -23.64 SS G_CDS: 0.71 Total: -22.93 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.46 Total: -7.65 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -2.10 Total: -8.88 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.13 -9.22 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091256261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.786 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds