Wall clock time and date at job start Mon Mar 30 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47451 * 2 1 4 4 C 1.53002 * 109.47377 * 120.00812 * 2 1 3 5 5 C 1.52998 * 109.47082 * 184.99586 * 4 2 1 6 6 O 1.42901 * 109.47374 * 179.97438 * 5 4 2 7 7 S 1.81402 * 109.46657 * 240.00495 * 2 1 3 8 8 C 1.81400 * 103.00324 * 65.00097 * 7 2 1 9 9 H 1.08999 * 109.46783 * 304.99559 * 8 7 2 10 10 C 1.50698 * 109.47141 * 64.99758 * 8 7 2 11 11 H 1.07998 * 120.00059 * 54.62719 * 10 8 7 12 12 C 1.37876 * 120.00175 * 234.62899 * 10 8 7 13 13 N 1.31514 * 120.00065 * 184.78097 * 12 10 8 14 14 Si 1.86800 * 119.99739 * 4.77565 * 12 10 8 15 15 H 1.48500 * 109.47240 * 84.87886 * 14 12 10 16 16 H 1.48503 * 109.46991 * 204.87840 * 14 12 10 17 17 H 1.48499 * 109.47539 * 324.87216 * 14 12 10 18 18 C 1.50699 * 109.47227 * 184.99971 * 8 7 2 19 19 C 1.38230 * 120.00210 * 304.68329 * 18 8 7 20 20 C 1.38237 * 120.00263 * 179.78947 * 19 18 8 21 21 C 1.38237 * 119.99671 * 0.43821 * 20 19 18 22 22 C 1.38238 * 119.99972 * 359.81308 * 21 20 19 23 23 C 1.38227 * 120.00044 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47451 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46773 * 299.99319 * 1 2 3 26 26 H 1.09001 * 109.47494 * 59.99607 * 1 2 3 27 27 H 1.08996 * 109.46815 * 304.99507 * 4 2 1 28 28 H 1.08992 * 109.47296 * 64.99631 * 4 2 1 29 29 H 1.08996 * 109.47232 * 299.99667 * 5 4 2 30 30 H 1.09002 * 109.46937 * 59.99907 * 5 4 2 31 31 H 0.96692 * 114.00215 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99913 * 179.97438 * 13 12 10 33 33 H 1.07999 * 119.99873 * 0.02562 * 19 18 8 34 34 H 1.07999 * 119.99971 * 180.27746 * 20 19 18 35 35 H 1.07993 * 119.99951 * 179.83408 * 21 20 19 36 36 H 1.07994 * 119.99666 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.00338 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 8 4.0413 -1.2868 2.4804 7 16 2.1345 -0.8550 -1.4813 8 6 1.5663 0.2155 -2.8310 9 1 0.4889 0.3601 -2.7509 10 6 2.2604 1.5500 -2.7399 11 1 3.3390 1.5969 -2.7126 12 6 1.5185 2.7111 -2.6913 13 7 2.1231 3.8789 -2.7067 14 14 -0.3455 2.6254 -2.6036 15 1 -0.7676 2.4618 -1.1893 16 1 -0.9249 3.8782 -3.1514 17 1 -0.8259 1.4681 -3.4006 18 6 1.8896 -0.4296 -4.1539 19 6 3.1894 -0.8013 -4.4424 20 6 3.4852 -1.3970 -5.6542 21 6 2.4827 -1.6129 -6.5812 22 6 1.1838 -1.2365 -6.2948 23 6 0.8872 -0.6448 -5.0813 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6055 -0.2620 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 3.9994 -1.0730 0.4257 30 1 3.8532 0.4368 1.3572 31 1 5.0020 -1.2592 2.5858 32 1 1.6011 4.6958 -2.6729 33 1 3.9731 -0.6296 -3.7195 34 1 4.5000 -1.6914 -5.8777 35 1 2.7143 -2.0759 -7.5290 36 1 0.4007 -1.4048 -7.0192 37 1 -0.1275 -0.3504 -4.8577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091263420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:01 Heat of formation + Delta-G solvation = -46.643053 kcal Electronic energy + Delta-G solvation = -18081.996405 eV Core-core repulsion = 15335.615818 eV Total energy + Delta-G solvation = -2746.380587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.54944 -36.96361 -34.33579 -33.68738 -31.62858 -30.26145 -28.86729 -27.59116 -23.23933 -22.95773 -21.96613 -21.04873 -20.22208 -17.24218 -17.05783 -16.26780 -15.87877 -15.11519 -14.85715 -14.40962 -14.14956 -13.93933 -13.44386 -13.18190 -12.90374 -12.72661 -12.33987 -12.06626 -11.94766 -11.65230 -11.62483 -11.22113 -10.79476 -10.72774 -10.59345 -10.46508 -10.28357 -10.06582 -9.73427 -9.62911 -8.93449 -8.77445 -8.28108 -7.89179 -6.65720 -6.42601 -4.36409 1.94567 2.04902 2.83299 3.03461 3.11016 3.15271 3.65037 4.09623 4.40587 4.56048 4.99859 5.30335 5.38532 5.47037 5.49829 5.56844 5.63671 5.80502 5.85202 5.90237 5.91143 6.11241 6.16090 6.20169 6.22292 6.30213 6.34674 6.51011 6.62172 6.65669 6.73641 7.06857 7.12871 7.20374 7.42246 7.66437 7.81299 8.13128 8.66745 9.14508 10.67025 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.008326 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.657100 B = 3362.053009 C = 4421.676097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 H 0.096 0.904 4 C -0.093 4.093 5 C 0.072 3.928 6 O -0.582 6.582 7 S -0.339 6.339 8 C 0.096 3.904 9 H 0.061 0.939 10 C -0.485 4.485 11 H 0.089 0.911 12 C 0.082 3.918 13 N -0.871 5.871 14 Si 0.860 3.140 15 H -0.262 1.262 16 H -0.283 1.283 17 H -0.260 1.260 18 C -0.020 4.020 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.375 0.625 32 H 0.271 0.729 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -7.706 1.239 7.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 H 0.114 0.886 4 C -0.132 4.132 5 C -0.005 4.005 6 O -0.387 6.387 7 S -0.105 6.105 8 C -0.029 4.029 9 H 0.079 0.921 10 C -0.527 4.527 11 H 0.107 0.893 12 C -0.126 4.126 13 N -0.506 5.506 14 Si 0.687 3.313 15 H -0.187 1.187 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.023 4.023 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.163 4.163 22 C -0.141 4.141 23 C -0.147 4.147 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.835 -8.610 1.336 8.753 hybrid contribution -1.052 1.565 -0.141 1.891 sum -1.888 -7.044 1.195 7.390 Atomic orbital electron populations 1.22138 0.94448 1.02030 1.01831 1.22665 0.97488 1.02680 0.93928 0.88578 1.21285 0.94271 1.01328 0.96267 1.22334 0.95006 0.95913 0.87252 1.86404 1.26793 1.79163 1.46386 1.86190 1.78789 1.41011 1.04481 1.20206 0.99016 0.95661 0.88001 0.92081 1.21061 0.95757 0.86786 1.49067 0.89313 1.25120 0.98383 0.95275 0.93839 1.69861 1.36390 0.97650 1.46688 0.87170 0.86351 0.78138 0.79653 1.18693 1.20938 1.18519 1.19888 0.93244 0.93312 0.95836 1.20994 0.96566 0.97629 0.96530 1.21046 0.98579 1.00244 0.94381 1.20900 0.93406 1.02765 0.99183 1.20931 0.96401 1.00067 0.96739 1.20960 0.98824 1.00569 0.94330 0.92056 0.92641 0.92412 0.91068 0.91061 0.91855 0.93536 0.77856 0.91892 0.85882 0.86944 0.87162 0.87022 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.10 37.16 0.34 -2.22 16 2 C -0.04 -0.72 2.65 -26.73 -0.07 -0.79 16 3 H 0.10 2.00 7.85 -51.92 -0.41 1.60 16 4 C -0.09 -1.51 5.05 -26.73 -0.14 -1.65 16 5 C 0.07 1.14 6.87 37.16 0.26 1.40 16 6 O -0.58 -8.42 13.66 -35.23 -0.48 -8.90 16 7 S -0.34 -6.95 18.73 -107.50 -2.01 -8.96 16 8 C 0.10 2.18 2.15 -29.04 -0.06 2.12 16 9 H 0.06 1.40 3.31 -51.92 -0.17 1.23 16 10 C -0.48 -12.46 8.12 -34.44 -0.28 -12.74 16 11 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 12 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.87 -24.42 13.96 55.43 0.77 -23.65 16 14 Si 0.86 19.63 25.29 -169.99 -4.30 15.33 16 15 H -0.26 -5.68 6.43 56.52 0.36 -5.32 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.26 -5.72 6.39 56.52 0.36 -5.36 16 18 C -0.02 -0.43 4.77 -104.62 -0.50 -0.93 16 19 C -0.10 -1.97 8.90 -39.58 -0.35 -2.32 16 20 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 21 C -0.14 -2.33 10.05 -39.58 -0.40 -2.72 16 22 C -0.12 -2.08 10.05 -39.59 -0.40 -2.48 16 23 C -0.13 -2.49 9.67 -39.58 -0.38 -2.88 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.11 3.78 -51.93 -0.20 0.92 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.05 7.13 -51.93 -0.37 0.68 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.38 3.64 9.12 45.56 0.42 4.05 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.12 2.52 7.90 -52.49 -0.41 2.10 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.11 2.11 7.95 -52.49 -0.42 1.69 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -28.36 312.76 -8.37 -36.73 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.58 Total: 10.43 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -2.48 Total: -25.70 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.77 Total: -23.65 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.48 Total: -8.90 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.30 Total: 15.33 kcal Atomic # 16 Polarization: -6.95 SS G_CDS: -2.01 Total: -8.96 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.36 -8.37 -36.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091263420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.913 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds