Wall clock time and date at job start Mon Mar 30 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47451 * 2 1 4 4 C 1.53002 * 109.47377 * 120.00812 * 2 1 3 5 5 C 1.52998 * 109.47082 * 184.99586 * 4 2 1 6 6 O 1.42901 * 109.47374 * 179.97438 * 5 4 2 7 7 S 1.81402 * 109.46657 * 240.00495 * 2 1 3 8 8 C 1.81400 * 103.00324 * 65.00097 * 7 2 1 9 9 H 1.08999 * 109.46783 * 304.99559 * 8 7 2 10 10 C 1.50698 * 109.47141 * 64.99758 * 8 7 2 11 11 H 1.07998 * 120.00059 * 54.62719 * 10 8 7 12 12 C 1.37876 * 120.00175 * 234.62899 * 10 8 7 13 13 N 1.31514 * 120.00065 * 184.78097 * 12 10 8 14 14 Si 1.86800 * 119.99739 * 4.77565 * 12 10 8 15 15 H 1.48500 * 109.47240 * 84.87886 * 14 12 10 16 16 H 1.48503 * 109.46991 * 204.87840 * 14 12 10 17 17 H 1.48499 * 109.47539 * 324.87216 * 14 12 10 18 18 C 1.50699 * 109.47227 * 184.99971 * 8 7 2 19 19 C 1.38230 * 120.00210 * 304.68329 * 18 8 7 20 20 C 1.38237 * 120.00263 * 179.78947 * 19 18 8 21 21 C 1.38237 * 119.99671 * 0.43821 * 20 19 18 22 22 C 1.38238 * 119.99972 * 359.81308 * 21 20 19 23 23 C 1.38227 * 120.00044 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47451 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46773 * 299.99319 * 1 2 3 26 26 H 1.09001 * 109.47494 * 59.99607 * 1 2 3 27 27 H 1.08996 * 109.46815 * 304.99507 * 4 2 1 28 28 H 1.08992 * 109.47296 * 64.99631 * 4 2 1 29 29 H 1.08996 * 109.47232 * 299.99667 * 5 4 2 30 30 H 1.09002 * 109.46937 * 59.99907 * 5 4 2 31 31 H 0.96692 * 114.00215 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99913 * 179.97438 * 13 12 10 33 33 H 1.07999 * 119.99873 * 0.02562 * 19 18 8 34 34 H 1.07999 * 119.99971 * 180.27746 * 20 19 18 35 35 H 1.07993 * 119.99951 * 179.83408 * 21 20 19 36 36 H 1.07994 * 119.99666 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.00338 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 8 4.0413 -1.2868 2.4804 7 16 2.1345 -0.8550 -1.4813 8 6 1.5663 0.2155 -2.8310 9 1 0.4889 0.3601 -2.7509 10 6 2.2604 1.5500 -2.7399 11 1 3.3390 1.5969 -2.7126 12 6 1.5185 2.7111 -2.6913 13 7 2.1231 3.8789 -2.7067 14 14 -0.3455 2.6254 -2.6036 15 1 -0.7676 2.4618 -1.1893 16 1 -0.9249 3.8782 -3.1514 17 1 -0.8259 1.4681 -3.4006 18 6 1.8896 -0.4296 -4.1539 19 6 3.1894 -0.8013 -4.4424 20 6 3.4852 -1.3970 -5.6542 21 6 2.4827 -1.6129 -6.5812 22 6 1.1838 -1.2365 -6.2948 23 6 0.8872 -0.6448 -5.0813 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6055 -0.2620 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 3.9994 -1.0730 0.4257 30 1 3.8532 0.4368 1.3572 31 1 5.0020 -1.2592 2.5858 32 1 1.6011 4.6958 -2.6729 33 1 3.9731 -0.6296 -3.7195 34 1 4.5000 -1.6914 -5.8777 35 1 2.7143 -2.0759 -7.5290 36 1 0.4007 -1.4048 -7.0192 37 1 -0.1275 -0.3504 -4.8577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091263420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:01 Heat of formation + Delta-G solvation = -64.002320 kcal Electronic energy + Delta-G solvation = -18082.749159 eV Core-core repulsion = 15335.615818 eV Total energy + Delta-G solvation = -2747.133341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99266 -38.19977 -35.85279 -35.36314 -33.37923 -31.67289 -30.23134 -29.26426 -25.00416 -24.34197 -23.39559 -22.49953 -21.72407 -19.19603 -18.29154 -17.68021 -17.34068 -16.86362 -16.33062 -15.97198 -15.52474 -15.36321 -14.95874 -14.69582 -14.62324 -14.13761 -13.90033 -13.59898 -13.46888 -13.17040 -12.97029 -12.85875 -12.33249 -12.17811 -12.05499 -11.98470 -11.91948 -11.70629 -11.46611 -10.95424 -10.81427 -10.48350 -9.70079 -9.38343 -8.45634 -8.31768 -6.41798 0.47613 0.62195 1.21388 1.24559 1.28005 1.32559 1.96501 2.19367 3.02129 3.10615 3.21086 3.90523 4.04364 4.05949 4.16463 4.24081 4.29235 4.38397 4.43630 4.45346 4.49238 4.60172 4.79222 4.79955 4.85233 4.88206 5.04807 5.09935 5.14901 5.22464 5.28349 5.34141 5.67740 5.70994 5.88484 6.12199 6.26501 6.56286 6.84913 7.12815 8.70407 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.008326 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.657100 B = 3362.053009 C = 4421.676097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 H 0.068 0.932 4 C -0.087 4.087 5 C 0.078 3.922 6 O -0.588 6.588 7 S -0.328 6.328 8 C 0.100 3.900 9 H 0.059 0.941 10 C -0.485 4.485 11 H 0.044 0.956 12 C 0.034 3.966 13 N -0.923 5.923 14 Si 0.909 3.091 15 H -0.243 1.243 16 H -0.286 1.286 17 H -0.247 1.247 18 C -0.055 4.055 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.118 4.118 23 C -0.144 4.144 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.396 0.604 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -9.904 0.639 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 H 0.086 0.914 4 C -0.126 4.126 5 C 0.000 4.000 6 O -0.396 6.396 7 S -0.095 6.095 8 C -0.026 4.026 9 H 0.077 0.923 10 C -0.527 4.527 11 H 0.062 0.938 12 C -0.169 4.169 13 N -0.562 5.562 14 Si 0.733 3.267 15 H -0.167 1.167 16 H -0.212 1.212 17 H -0.171 1.171 18 C -0.057 4.057 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.136 4.136 23 C -0.164 4.164 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.246 0.754 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.116 -10.821 0.742 11.051 hybrid contribution -0.502 2.095 0.034 2.155 sum -2.618 -8.726 0.776 9.143 Atomic orbital electron populations 1.22145 0.93074 1.03249 1.01971 1.22760 0.98726 1.01131 0.93980 0.91370 1.21239 0.94583 1.01289 0.95458 1.22147 0.94851 0.95628 0.87339 1.86350 1.28990 1.78827 1.45415 1.86054 1.79332 1.39602 1.04481 1.20079 0.98263 0.94571 0.89683 0.92326 1.20983 0.93771 0.88800 1.49114 0.93764 1.25787 1.02712 0.94713 0.93685 1.69991 1.38055 0.98387 1.49724 0.86377 0.81168 0.78267 0.80861 1.16739 1.21230 1.17088 1.19934 0.94521 0.95559 0.95730 1.20997 0.95774 0.99329 0.97885 1.21392 1.00568 0.98994 0.93268 1.21399 0.92568 1.01053 1.00161 1.21362 0.97899 0.98281 0.96086 1.21151 0.98522 1.01456 0.95281 0.90324 0.90375 0.94293 0.89273 0.90600 0.93179 0.94017 0.75430 0.91970 0.87800 0.84182 0.83001 0.83421 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.10 71.98 0.65 -4.19 16 2 C -0.04 -1.37 2.65 30.59 0.08 -1.29 16 3 H 0.07 2.91 7.85 -2.39 -0.02 2.89 16 4 C -0.09 -2.72 5.05 30.59 0.15 -2.56 16 5 C 0.08 2.42 6.87 71.98 0.49 2.92 16 6 O -0.59 -16.01 13.66 -148.98 -2.04 -18.05 16 7 S -0.33 -13.59 18.73 -56.49 -1.06 -14.65 16 8 C 0.10 4.63 2.15 29.10 0.06 4.69 16 9 H 0.06 2.70 3.31 -2.39 -0.01 2.69 16 10 C -0.49 -26.26 8.12 25.60 0.21 -26.05 16 11 H 0.04 2.72 8.06 -2.91 -0.02 2.69 16 12 C 0.03 1.85 5.47 84.65 0.46 2.32 16 13 N -0.92 -54.47 13.96 21.45 0.30 -54.17 16 14 Si 0.91 40.92 25.29 68.60 1.74 42.65 16 15 H -0.24 -10.11 6.43 99.48 0.64 -9.47 16 16 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.25 -10.44 6.39 99.48 0.64 -9.80 16 18 C -0.05 -2.37 4.77 -19.87 -0.09 -2.46 16 19 C -0.12 -4.90 8.90 22.27 0.20 -4.70 16 20 C -0.12 -4.04 10.05 22.27 0.22 -3.81 16 21 C -0.13 -3.80 10.05 22.27 0.22 -3.57 16 22 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 23 C -0.14 -5.48 9.67 22.27 0.22 -5.26 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.04 1.43 3.78 -2.39 -0.01 1.43 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 1.67 7.13 -2.39 -0.02 1.65 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.40 7.02 9.12 -74.06 -0.68 6.35 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.10 4.48 7.90 -2.91 -0.02 4.46 16 34 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.11 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -64.13 312.76 2.30 -61.84 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.25 Total: 29.73 kcal Atomic # 6 Polarization: -50.47 SS G_CDS: 3.11 Total: -47.36 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.30 Total: -54.17 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -2.04 Total: -18.05 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.74 Total: 42.65 kcal Atomic # 16 Polarization: -13.59 SS G_CDS: -1.06 Total: -14.65 kcal Total: -64.13 2.30 -61.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091263420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.165 kcal (2) G-P(sol) polarization free energy of solvation -64.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds