Wall clock time and date at job start Mon Mar 30 2020 07:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.53005 * 109.46960 * 239.99958 * 2 1 3 5 5 C 1.52999 * 109.47048 * 175.00005 * 4 2 1 6 6 O 1.42895 * 109.47136 * 179.97438 * 5 4 2 7 7 S 1.81399 * 109.47013 * 120.00320 * 2 1 3 8 8 C 1.81397 * 103.00310 * 294.99675 * 7 2 1 9 9 H 1.09004 * 109.46974 * 54.99727 * 8 7 2 10 10 C 1.50710 * 109.46965 * 295.00264 * 8 7 2 11 11 H 1.07999 * 119.99812 * 325.18017 * 10 8 7 12 12 C 1.37879 * 119.99858 * 145.17564 * 10 8 7 13 13 N 1.31515 * 119.99730 * 184.99705 * 12 10 8 14 14 Si 1.86804 * 120.00059 * 4.99869 * 12 10 8 15 15 H 1.48496 * 109.46853 * 84.50167 * 14 12 10 16 16 H 1.48497 * 109.46923 * 204.49909 * 14 12 10 17 17 H 1.48503 * 109.47225 * 324.49826 * 14 12 10 18 18 C 1.50691 * 109.47691 * 175.00035 * 8 7 2 19 19 C 1.38238 * 119.99776 * 63.68519 * 18 8 7 20 20 C 1.38240 * 119.99608 * 179.81165 * 19 18 8 21 21 C 1.38228 * 120.00093 * 0.39785 * 20 19 18 22 22 C 1.38230 * 120.00275 * 359.85716 * 21 20 19 23 23 C 1.38239 * 119.99983 * 243.96387 * 18 8 7 24 24 H 1.09002 * 109.46961 * 59.99571 * 1 2 3 25 25 H 1.08992 * 109.47303 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46453 * 300.00108 * 1 2 3 27 27 H 1.08996 * 109.46761 * 295.00343 * 4 2 1 28 28 H 1.08994 * 109.46800 * 55.00561 * 4 2 1 29 29 H 1.08995 * 109.47648 * 300.00370 * 5 4 2 30 30 H 1.09002 * 109.46724 * 60.00362 * 5 4 2 31 31 H 0.96703 * 114.00642 * 180.02562 * 6 5 4 32 32 H 0.96997 * 119.99759 * 180.02562 * 13 12 10 33 33 H 1.07995 * 119.99970 * 0.02562 * 19 18 8 34 34 H 1.08001 * 119.99794 * 180.23473 * 20 19 18 35 35 H 1.08006 * 119.99886 * 179.82930 * 21 20 19 36 36 H 1.08002 * 120.00690 * 179.97438 * 22 21 20 37 37 H 1.07990 * 119.99921 * 359.97300 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 8 4.0412 -1.2875 -2.4802 7 16 2.1347 -0.8552 1.4811 8 6 1.5665 0.2151 2.8309 9 1 0.4891 0.3598 2.7510 10 6 2.2607 1.5497 2.7399 11 1 3.2830 1.6043 2.3959 12 6 1.5906 2.7010 3.0957 13 7 2.1610 3.8735 2.9239 14 14 -0.1272 2.5953 3.8219 15 1 -0.0325 2.3557 5.2843 16 1 -0.8483 3.8697 3.5748 17 1 -0.8665 1.4765 3.1838 18 6 1.8899 -0.4301 4.1538 19 6 3.2070 -0.6438 4.5149 20 6 3.5037 -1.2321 5.7302 21 6 2.4832 -1.6141 6.5806 22 6 1.1660 -1.4052 6.2172 23 6 0.8692 -0.8134 5.0037 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1369 29 1 3.8533 0.4368 -1.3574 30 1 3.9994 -1.0729 -0.4260 31 1 5.0020 -1.2600 -2.5857 32 1 1.6897 4.6834 3.1745 33 1 4.0043 -0.3480 3.8492 34 1 4.5329 -1.3956 6.0140 35 1 2.7150 -2.0763 7.5289 36 1 0.3685 -1.7041 6.8815 37 1 -0.1598 -0.6501 4.7197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091263426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:09 Heat of formation + Delta-G solvation = -47.154159 kcal Electronic energy + Delta-G solvation = -18046.192663 eV Core-core repulsion = 15299.789913 eV Total energy + Delta-G solvation = -2746.402750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.55986 -36.98134 -34.30701 -33.68171 -31.56566 -30.26247 -28.83813 -27.54602 -23.21713 -22.94069 -21.94874 -21.10929 -20.24117 -17.11503 -17.09106 -16.26897 -15.88203 -15.10754 -14.80204 -14.39750 -14.14778 -13.95587 -13.40823 -13.20959 -12.79923 -12.67525 -12.34491 -12.14515 -11.91404 -11.66711 -11.64417 -11.06200 -10.79199 -10.75101 -10.58654 -10.53042 -10.37305 -10.07366 -9.73767 -9.56863 -8.94066 -8.73601 -8.27982 -7.88192 -6.70674 -6.34761 -4.34025 1.90738 2.04943 2.81823 3.10940 3.18009 3.21895 3.60523 4.17602 4.38819 4.57220 4.99349 5.28842 5.36666 5.46096 5.49860 5.55802 5.63223 5.79115 5.84660 5.90092 5.90927 6.14246 6.15451 6.19136 6.22104 6.30825 6.36034 6.54694 6.62456 6.65203 6.74749 7.06121 7.13433 7.23319 7.44871 7.67117 7.79502 8.17662 8.71259 9.22708 10.75016 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.007893 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.419130 B = 3546.542986 C = 4469.977903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 H 0.098 0.902 4 C -0.094 4.094 5 C 0.072 3.928 6 O -0.582 6.582 7 S -0.307 6.307 8 C 0.091 3.909 9 H 0.064 0.936 10 C -0.499 4.499 11 H 0.089 0.911 12 C 0.085 3.915 13 N -0.879 5.879 14 Si 0.861 3.139 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.029 4.029 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.125 4.125 23 C -0.131 4.131 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.376 0.624 32 H 0.269 0.731 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -8.076 -1.398 8.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 H 0.117 0.883 4 C -0.132 4.132 5 C -0.006 4.006 6 O -0.387 6.387 7 S -0.074 6.074 8 C -0.036 4.036 9 H 0.082 0.918 10 C -0.539 4.539 11 H 0.107 0.893 12 C -0.122 4.122 13 N -0.514 5.514 14 Si 0.688 3.312 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.186 1.186 18 C -0.032 4.032 19 C -0.108 4.108 20 C -0.144 4.144 21 C -0.161 4.161 22 C -0.143 4.143 23 C -0.151 4.151 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.222 0.778 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.690 -8.952 -1.469 9.098 hybrid contribution -0.988 1.549 0.662 1.953 sum -1.678 -7.402 -0.807 7.633 Atomic orbital electron populations 1.22009 0.94095 1.01988 1.01978 1.22747 0.97871 1.02764 0.93744 0.88349 1.21295 0.94240 1.01340 0.96351 1.22338 0.95033 0.95932 0.87259 1.86405 1.26827 1.79090 1.46404 1.86088 1.78521 1.39371 1.03427 1.20237 0.99641 0.95808 0.87887 0.91808 1.21037 1.01438 0.86925 1.44511 0.89344 1.25031 0.97637 0.95191 0.94375 1.69863 1.38344 0.97688 1.45536 0.87093 0.85135 0.77785 0.81173 1.19112 1.21019 1.18596 1.20093 0.93217 0.93473 0.96413 1.20997 0.96650 0.97172 0.95964 1.21069 0.98528 1.00019 0.94832 1.20903 0.93068 1.02611 0.99511 1.20928 0.96280 1.00498 0.96593 1.20976 0.98601 1.00384 0.95122 0.92609 0.92239 0.92080 0.91088 0.90935 0.93482 0.91959 0.77823 0.92090 0.85759 0.86896 0.87148 0.87058 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.10 37.16 0.34 -2.03 16 2 C -0.04 -0.77 2.65 -26.73 -0.07 -0.84 16 3 H 0.10 1.99 7.85 -51.93 -0.41 1.58 16 4 C -0.09 -1.48 5.05 -26.73 -0.14 -1.61 16 5 C 0.07 1.10 6.87 37.16 0.26 1.36 16 6 O -0.58 -8.25 13.66 -35.23 -0.48 -8.73 16 7 S -0.31 -6.19 19.07 -107.50 -2.05 -8.24 16 8 C 0.09 2.05 1.78 -29.03 -0.05 1.99 16 9 H 0.06 1.47 3.68 -51.92 -0.19 1.28 16 10 C -0.50 -12.81 7.87 -34.43 -0.27 -13.09 16 11 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 12 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 13 N -0.88 -24.93 13.96 55.43 0.77 -24.16 16 14 Si 0.86 20.20 27.06 -169.99 -4.60 15.60 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.26 -5.76 6.07 56.52 0.34 -5.42 16 18 C -0.03 -0.62 4.54 -104.63 -0.48 -1.10 16 19 C -0.09 -1.80 8.94 -39.58 -0.35 -2.15 16 20 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 21 C -0.14 -2.32 10.05 -39.59 -0.40 -2.72 16 22 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 23 C -0.13 -2.57 9.34 -39.58 -0.37 -2.94 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.13 6.79 -51.93 -0.35 0.78 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.01 7.13 -51.93 -0.37 0.64 16 31 H 0.38 3.55 9.12 45.56 0.42 3.96 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.12 2.57 7.97 -52.49 -0.42 2.16 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16 LS Contribution 317.52 15.07 4.79 4.79 Total: -1.00 -28.73 317.52 -8.74 -37.47 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.74 Total: 9.37 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -2.42 Total: -26.09 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.77 Total: -24.16 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.48 Total: -8.73 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.60 Total: 15.60 kcal Atomic # 16 Polarization: -6.19 SS G_CDS: -2.05 Total: -8.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.73 -8.74 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091263426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.685 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds