Wall clock time and date at job start Mon Mar 30 2020 07:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.53005 * 109.46960 * 239.99958 * 2 1 3 5 5 C 1.52999 * 109.47048 * 175.00005 * 4 2 1 6 6 O 1.42895 * 109.47136 * 179.97438 * 5 4 2 7 7 S 1.81399 * 109.47013 * 120.00320 * 2 1 3 8 8 C 1.81397 * 103.00310 * 294.99675 * 7 2 1 9 9 H 1.09004 * 109.46974 * 54.99727 * 8 7 2 10 10 C 1.50710 * 109.46965 * 295.00264 * 8 7 2 11 11 H 1.07999 * 119.99812 * 325.18017 * 10 8 7 12 12 C 1.37879 * 119.99858 * 145.17564 * 10 8 7 13 13 N 1.31515 * 119.99730 * 184.99705 * 12 10 8 14 14 Si 1.86804 * 120.00059 * 4.99869 * 12 10 8 15 15 H 1.48496 * 109.46853 * 84.50167 * 14 12 10 16 16 H 1.48497 * 109.46923 * 204.49909 * 14 12 10 17 17 H 1.48503 * 109.47225 * 324.49826 * 14 12 10 18 18 C 1.50691 * 109.47691 * 175.00035 * 8 7 2 19 19 C 1.38238 * 119.99776 * 63.68519 * 18 8 7 20 20 C 1.38240 * 119.99608 * 179.81165 * 19 18 8 21 21 C 1.38228 * 120.00093 * 0.39785 * 20 19 18 22 22 C 1.38230 * 120.00275 * 359.85716 * 21 20 19 23 23 C 1.38239 * 119.99983 * 243.96387 * 18 8 7 24 24 H 1.09002 * 109.46961 * 59.99571 * 1 2 3 25 25 H 1.08992 * 109.47303 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46453 * 300.00108 * 1 2 3 27 27 H 1.08996 * 109.46761 * 295.00343 * 4 2 1 28 28 H 1.08994 * 109.46800 * 55.00561 * 4 2 1 29 29 H 1.08995 * 109.47648 * 300.00370 * 5 4 2 30 30 H 1.09002 * 109.46724 * 60.00362 * 5 4 2 31 31 H 0.96703 * 114.00642 * 180.02562 * 6 5 4 32 32 H 0.96997 * 119.99759 * 180.02562 * 13 12 10 33 33 H 1.07995 * 119.99970 * 0.02562 * 19 18 8 34 34 H 1.08001 * 119.99794 * 180.23473 * 20 19 18 35 35 H 1.08006 * 119.99886 * 179.82930 * 21 20 19 36 36 H 1.08002 * 120.00690 * 179.97438 * 22 21 20 37 37 H 1.07990 * 119.99921 * 359.97300 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 8 4.0412 -1.2875 -2.4802 7 16 2.1347 -0.8552 1.4811 8 6 1.5665 0.2151 2.8309 9 1 0.4891 0.3598 2.7510 10 6 2.2607 1.5497 2.7399 11 1 3.2830 1.6043 2.3959 12 6 1.5906 2.7010 3.0957 13 7 2.1610 3.8735 2.9239 14 14 -0.1272 2.5953 3.8219 15 1 -0.0325 2.3557 5.2843 16 1 -0.8483 3.8697 3.5748 17 1 -0.8665 1.4765 3.1838 18 6 1.8899 -0.4301 4.1538 19 6 3.2070 -0.6438 4.5149 20 6 3.5037 -1.2321 5.7302 21 6 2.4832 -1.6141 6.5806 22 6 1.1660 -1.4052 6.2172 23 6 0.8692 -0.8134 5.0037 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1369 29 1 3.8533 0.4368 -1.3574 30 1 3.9994 -1.0729 -0.4260 31 1 5.0020 -1.2600 -2.5857 32 1 1.6897 4.6834 3.1745 33 1 4.0043 -0.3480 3.8492 34 1 4.5329 -1.3956 6.0140 35 1 2.7150 -2.0763 7.5289 36 1 0.3685 -1.7041 6.8815 37 1 -0.1598 -0.6501 4.7197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091263426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:08 Heat of formation + Delta-G solvation = -64.304285 kcal Electronic energy + Delta-G solvation = -18046.936348 eV Core-core repulsion = 15299.789913 eV Total energy + Delta-G solvation = -2747.146435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00618 -38.19322 -35.78965 -35.37062 -33.34261 -31.67603 -30.16907 -29.22454 -24.99173 -24.30250 -23.38274 -22.54248 -21.73067 -19.09121 -18.29534 -17.66693 -17.30811 -16.89015 -16.24831 -16.02361 -15.45087 -15.35704 -15.02170 -14.61161 -14.52721 -14.13812 -13.85620 -13.65294 -13.49831 -13.17977 -12.91571 -12.83368 -12.25387 -12.20745 -12.06017 -12.03763 -11.92275 -11.73704 -11.43990 -10.95728 -10.82239 -10.46835 -9.70335 -9.37560 -8.43599 -8.31892 -6.41837 0.43988 0.61813 1.23504 1.27939 1.29299 1.33185 1.94823 2.22611 3.00073 3.10692 3.21870 3.92641 4.05578 4.06891 4.16601 4.25736 4.28712 4.37446 4.45608 4.51664 4.52025 4.63723 4.77990 4.83068 4.86661 4.91295 5.05472 5.14862 5.16115 5.25218 5.28971 5.35468 5.66837 5.71031 5.89324 6.14657 6.25942 6.59583 6.85066 7.17643 8.74240 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.007893 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.419130 B = 3546.542986 C = 4469.977903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.039 4.039 3 H 0.069 0.931 4 C -0.087 4.087 5 C 0.078 3.922 6 O -0.588 6.588 7 S -0.304 6.304 8 C 0.095 3.905 9 H 0.059 0.941 10 C -0.491 4.491 11 H 0.046 0.954 12 C 0.034 3.966 13 N -0.929 5.929 14 Si 0.913 3.087 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.240 1.240 18 C -0.059 4.059 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.147 4.147 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.396 0.604 32 H 0.269 0.731 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -10.248 -0.432 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 H 0.088 0.912 4 C -0.126 4.126 5 C 0.000 4.000 6 O -0.396 6.396 7 S -0.071 6.071 8 C -0.032 4.032 9 H 0.077 0.923 10 C -0.531 4.531 11 H 0.065 0.935 12 C -0.167 4.167 13 N -0.567 5.567 14 Si 0.737 3.263 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.165 1.165 18 C -0.062 4.062 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.167 4.167 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.246 0.754 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.929 -11.142 -0.508 11.319 hybrid contribution -0.460 2.095 0.329 2.170 sum -2.388 -9.047 -0.179 9.359 Atomic orbital electron populations 1.21986 0.92620 1.03039 1.02093 1.22827 0.99152 1.01131 0.93716 0.91230 1.21245 0.94506 1.01283 0.95553 1.22158 0.94919 0.95644 0.87319 1.86352 1.29003 1.78767 1.45465 1.85985 1.79091 1.38384 1.03642 1.20100 0.98678 0.94675 0.89776 0.92312 1.20994 0.99662 0.88930 1.43532 0.93544 1.25700 1.01285 0.94766 0.94988 1.69992 1.40189 0.98421 1.48132 0.86254 0.81218 0.78324 0.80485 1.18890 1.20962 1.16454 1.20057 0.94343 0.95677 0.96116 1.20992 0.95870 0.98983 0.97421 1.21404 1.00598 0.98752 0.93658 1.21398 0.92307 1.00917 1.00469 1.21373 0.97859 0.98847 0.95832 1.21182 0.98377 1.01106 0.96054 0.90147 0.90677 0.94253 0.90658 0.89127 0.93955 0.93285 0.75423 0.92195 0.87887 0.84223 0.83027 0.83450 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.10 71.98 0.65 -3.81 16 2 C -0.04 -1.42 2.65 30.60 0.08 -1.34 16 3 H 0.07 2.92 7.85 -2.39 -0.02 2.90 16 4 C -0.09 -2.66 5.05 30.60 0.15 -2.51 16 5 C 0.08 2.36 6.87 71.98 0.49 2.85 16 6 O -0.59 -15.79 13.66 -148.98 -2.03 -17.83 16 7 S -0.30 -12.42 19.07 -56.49 -1.08 -13.50 16 8 C 0.10 4.36 1.78 29.10 0.05 4.41 16 9 H 0.06 2.71 3.68 -2.39 -0.01 2.70 16 10 C -0.49 -26.47 7.87 25.60 0.20 -26.27 16 11 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 12 C 0.03 1.90 5.47 84.66 0.46 2.36 16 13 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 14 Si 0.91 42.12 27.06 68.60 1.86 43.98 16 15 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.24 -10.18 6.07 99.48 0.60 -9.57 16 18 C -0.06 -2.54 4.54 -19.87 -0.09 -2.63 16 19 C -0.11 -4.62 8.94 22.27 0.20 -4.42 16 20 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 21 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 22 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 23 C -0.15 -5.52 9.34 22.27 0.21 -5.31 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.04 1.43 6.79 -2.39 -0.02 1.41 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.61 7.13 -2.39 -0.02 1.59 16 31 H 0.40 6.89 9.12 -74.06 -0.68 6.22 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.10 4.51 7.97 -2.91 -0.02 4.48 16 34 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.11 4.06 7.95 -2.92 -0.02 4.04 16 Total: -1.00 -64.49 317.52 2.41 -62.09 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.27 Total: 27.77 kcal Atomic # 6 Polarization: -50.70 SS G_CDS: 3.09 Total: -47.61 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.30 Total: -54.90 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -2.03 Total: -17.83 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.86 Total: 43.98 kcal Atomic # 16 Polarization: -12.42 SS G_CDS: -1.08 Total: -13.50 kcal Total: -64.49 2.41 -62.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091263426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.216 kcal (2) G-P(sol) polarization free energy of solvation -64.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds