Wall clock time and date at job start Mon Mar 30 2020 06:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 S 1.81398 * 109.47126 * 89.99763 * 8 7 6 10 10 O 1.42104 * 109.46560 * 63.61064 * 9 8 7 11 11 C 1.81394 * 103.00163 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47620 * 295.00246 * 11 9 8 13 13 C 1.53003 * 109.46813 * 55.00516 * 11 9 8 14 14 C 1.50705 * 109.47063 * 175.00122 * 11 9 8 15 15 H 1.07996 * 120.00219 * 0.02562 * 14 11 9 16 16 C 1.37881 * 119.99544 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00446 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99416 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47087 * 60.00426 * 18 16 14 20 20 H 1.48500 * 109.47066 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47307 * 300.00038 * 18 16 14 22 22 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 23 23 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 24 24 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 25 25 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 26 26 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 28 28 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 29 29 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 30 30 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 31 31 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 32 32 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 33 33 H 1.09004 * 109.46960 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47266 * 299.99619 * 13 11 9 35 35 H 1.08999 * 109.47558 * 59.99939 * 13 11 9 36 36 H 0.96999 * 119.99921 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 16 4.6360 -3.0248 1.7127 10 8 3.3946 -3.2751 2.3575 11 6 5.5366 -4.5862 1.5094 12 1 4.8860 -5.3222 1.0373 13 6 6.7670 -4.3544 0.6300 14 6 5.9728 -5.0940 2.8596 15 1 5.7319 -4.5338 3.7509 16 6 6.6794 -6.2740 2.9570 17 7 6.9732 -6.9560 1.8716 18 14 7.2194 -6.9038 4.6307 19 1 6.0249 -7.1296 5.4835 20 1 7.9568 -8.1820 4.4643 21 1 8.1051 -5.9010 5.2748 22 6 2.1983 -1.1971 0.0008 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6581 2.1325 0.0004 27 1 4.5166 2.8170 -1.0275 28 1 3.7443 3.2621 0.5132 29 1 5.2858 2.3723 0.5148 30 1 5.3517 0.0003 0.0060 31 1 3.7453 -3.2620 -0.5115 32 1 5.2867 -2.3719 -0.5114 33 1 7.3085 -5.2926 0.5082 34 1 6.4516 -3.9871 -0.3466 35 1 7.4178 -3.6184 1.1021 36 1 7.4707 -7.7859 1.9402 37 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094721168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:51 Heat of formation + Delta-G solvation = -37.551101 kcal Electronic energy + Delta-G solvation = -17605.794271 eV Core-core repulsion = 14859.807941 eV Total energy + Delta-G solvation = -2745.986330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40709 -34.65079 -34.02324 -33.42332 -33.33235 -30.41539 -27.90312 -26.61300 -26.56773 -25.19983 -21.57393 -20.61559 -20.59799 -16.80075 -16.21805 -16.09915 -15.64153 -15.17178 -14.41128 -14.29869 -13.80560 -13.51099 -13.41633 -13.20234 -12.90166 -12.68149 -12.67707 -12.51607 -12.14928 -11.76734 -11.50900 -11.24312 -11.08726 -10.91568 -10.89298 -10.77614 -10.56834 -10.42041 -10.26256 -9.27377 -9.18072 -8.57404 -8.40099 -8.13005 -7.10958 -6.13401 -4.25639 1.44116 1.52623 2.58446 3.26911 3.30793 3.35316 3.75780 3.94127 4.33395 4.69821 4.83802 4.89311 4.99238 5.17909 5.27448 5.37022 5.39693 5.54654 5.57688 5.62940 5.70495 5.74340 5.85574 5.90288 6.05739 6.32197 6.33101 6.56655 6.68257 6.69913 6.71593 6.78987 6.84165 7.19765 7.31932 7.63801 7.79132 8.10845 8.75305 9.39724 10.91815 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.004483 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.836355 B = 6243.774958 C = 6507.883901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.083 4.083 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.038 4.038 8 C -0.419 4.419 9 S 1.200 4.800 10 O -0.861 6.861 11 C -0.225 4.225 12 H 0.044 0.956 13 C -0.124 4.124 14 C -0.508 4.508 15 H 0.063 0.937 16 C 0.072 3.928 17 N -0.883 5.883 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.120 4.120 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.017 0.983 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 16.225 -5.647 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.152 4.152 4 C -0.083 4.083 5 C -0.168 4.168 6 C -0.144 4.144 7 C -0.039 4.039 8 C -0.551 4.551 9 S 1.403 4.597 10 O -0.856 6.856 11 C -0.347 4.347 12 H 0.062 0.938 13 C -0.183 4.183 14 C -0.547 4.547 15 H 0.081 0.919 16 C -0.132 4.132 17 N -0.520 5.520 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.139 4.139 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.553 16.525 -4.891 17.596 hybrid contribution -0.930 -2.237 -0.361 2.449 sum -4.483 14.288 -5.252 15.869 Atomic orbital electron populations 1.20771 0.91500 1.02346 1.02324 1.19824 0.95846 0.93027 0.99440 1.20794 0.93591 0.97121 1.03678 1.19831 0.93707 0.95163 0.99631 1.20768 1.00012 0.94008 1.02055 1.20924 0.99979 0.91008 1.02523 1.19232 0.93192 0.93586 0.97913 1.26915 1.05371 0.99302 1.23548 1.70060 0.98734 1.06471 0.84416 1.93000 1.43737 1.86496 1.62399 1.24683 1.01416 1.06891 1.01717 0.93800 1.21580 0.98415 1.03539 0.94792 1.20400 1.36495 1.07784 0.90049 0.91894 1.24920 0.95250 0.96020 0.97021 1.69862 1.39001 1.15457 1.27701 0.86538 0.78943 0.78263 0.83698 1.20043 1.21064 1.19622 1.20946 0.93810 0.97630 1.01532 0.91178 0.91788 0.91731 0.86516 0.91449 0.91826 0.91270 0.85365 0.89556 0.86025 0.88982 0.96443 0.93675 0.92627 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 36.01 0.36 -0.90 16 2 C -0.08 -1.15 5.88 -104.62 -0.62 -1.76 16 3 C -0.13 -1.69 9.36 -39.59 -0.37 -2.06 16 4 C -0.08 -1.03 5.88 -104.62 -0.62 -1.65 16 5 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 6 C -0.13 -1.71 9.36 -39.58 -0.37 -2.08 16 7 C -0.04 -0.61 5.14 -104.63 -0.54 -1.15 16 8 C -0.42 -7.05 5.45 36.01 0.20 -6.86 16 9 S 1.20 24.41 12.57 -107.50 -1.35 23.05 16 10 O -0.86 -22.37 18.14 -35.23 -0.64 -23.01 16 11 C -0.23 -5.47 2.82 -27.88 -0.08 -5.55 16 12 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -2.64 8.72 37.16 0.32 -2.32 16 14 C -0.51 -13.76 8.58 -34.44 -0.30 -14.05 16 15 H 0.06 1.68 7.71 -52.49 -0.40 1.27 16 16 C 0.07 1.96 5.30 -17.82 -0.09 1.86 16 17 N -0.88 -24.64 11.32 55.43 0.63 -24.02 16 18 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.12 -1.98 9.36 -39.59 -0.37 -2.35 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.09 1.53 8.08 -51.93 -0.42 1.12 16 32 H 0.12 1.73 6.84 -51.92 -0.36 1.37 16 33 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 34 H 0.02 0.30 6.51 -51.93 -0.34 -0.03 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -33.39 321.36 -9.25 -42.65 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.61 Total: 0.06 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: -2.11 Total: -39.50 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.63 Total: -24.02 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.64 Total: -23.01 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 24.41 SS G_CDS: -1.35 Total: 23.05 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.39 -9.25 -42.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094721168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.094 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds