Wall clock time and date at job start Mon Mar 30 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 S 1.81398 * 109.47126 * 89.99763 * 8 7 6 10 10 O 1.42104 * 109.46560 * 63.61064 * 9 8 7 11 11 C 1.81394 * 103.00163 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47620 * 295.00246 * 11 9 8 13 13 C 1.53003 * 109.46813 * 55.00516 * 11 9 8 14 14 C 1.50705 * 109.47063 * 175.00122 * 11 9 8 15 15 H 1.07996 * 120.00219 * 0.02562 * 14 11 9 16 16 C 1.37881 * 119.99544 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00446 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99416 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47087 * 60.00426 * 18 16 14 20 20 H 1.48500 * 109.47066 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47307 * 300.00038 * 18 16 14 22 22 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 23 23 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 24 24 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 25 25 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 26 26 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 28 28 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 29 29 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 30 30 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 31 31 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 32 32 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 33 33 H 1.09004 * 109.46960 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47266 * 299.99619 * 13 11 9 35 35 H 1.08999 * 109.47558 * 59.99939 * 13 11 9 36 36 H 0.96999 * 119.99921 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 16 4.6360 -3.0248 1.7127 10 8 3.3946 -3.2751 2.3575 11 6 5.5366 -4.5862 1.5094 12 1 4.8860 -5.3222 1.0373 13 6 6.7670 -4.3544 0.6300 14 6 5.9728 -5.0940 2.8596 15 1 5.7319 -4.5338 3.7509 16 6 6.6794 -6.2740 2.9570 17 7 6.9732 -6.9560 1.8716 18 14 7.2194 -6.9038 4.6307 19 1 6.0249 -7.1296 5.4835 20 1 7.9568 -8.1820 4.4643 21 1 8.1051 -5.9010 5.2748 22 6 2.1983 -1.1971 0.0008 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6581 2.1325 0.0004 27 1 4.5166 2.8170 -1.0275 28 1 3.7443 3.2621 0.5132 29 1 5.2858 2.3723 0.5148 30 1 5.3517 0.0003 0.0060 31 1 3.7453 -3.2620 -0.5115 32 1 5.2867 -2.3719 -0.5114 33 1 7.3085 -5.2926 0.5082 34 1 6.4516 -3.9871 -0.3466 35 1 7.4178 -3.6184 1.1021 36 1 7.4707 -7.7859 1.9402 37 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094721168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:50 Heat of formation + Delta-G solvation = -58.114351 kcal Electronic energy + Delta-G solvation = -17606.685960 eV Core-core repulsion = 14859.807941 eV Total energy + Delta-G solvation = -2746.878020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45811 -36.56812 -35.98996 -34.49379 -34.34761 -32.35854 -28.97069 -27.77600 -27.53111 -27.06620 -23.42922 -21.78215 -21.59320 -18.66928 -18.07469 -17.20211 -17.02264 -16.70548 -15.97189 -15.73392 -15.28445 -14.89632 -14.74207 -14.47664 -13.95601 -13.94711 -13.81137 -13.71039 -13.29990 -13.17040 -12.91946 -12.81251 -12.66250 -12.55620 -12.27903 -12.21500 -12.11904 -11.92050 -11.81934 -11.20083 -10.80709 -10.58547 -9.48822 -9.42979 -8.85037 -8.17974 -6.38223 0.23747 0.46645 1.05924 1.40608 1.43184 1.50727 2.07801 2.38750 2.83977 3.02520 3.15437 3.70621 3.86226 3.97035 4.23001 4.28416 4.45316 4.56878 4.66124 4.72604 4.74334 4.74918 4.80084 4.94654 4.97274 4.99539 5.03002 5.11483 5.30373 5.41753 5.42860 5.62831 5.63933 5.68190 5.74174 5.88057 6.17060 6.19491 6.70235 7.30447 8.85617 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.004483 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.836355 B = 6243.774958 C = 6507.883901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.082 4.082 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.065 4.065 8 C -0.401 4.401 9 S 1.255 4.745 10 O -0.925 6.925 11 C -0.241 4.241 12 H -0.005 1.005 13 C -0.117 4.117 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.957 3.043 19 H -0.283 1.283 20 H -0.279 1.279 21 H -0.252 1.252 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.147 0.853 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.158 0.842 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.265 0.735 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 19.416 -5.968 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.082 4.082 5 C -0.167 4.167 6 C -0.147 4.147 7 C -0.066 4.066 8 C -0.537 4.537 9 S 1.460 4.540 10 O -0.921 6.921 11 C -0.361 4.361 12 H 0.014 0.986 13 C -0.177 4.177 14 C -0.572 4.572 15 H 0.077 0.923 16 C -0.178 4.178 17 N -0.547 5.547 18 Si 0.781 3.219 19 H -0.208 1.208 20 H -0.204 1.204 21 H -0.175 1.175 22 C -0.174 4.174 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.165 0.835 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.175 0.825 31 H 0.089 0.911 32 H 0.175 0.825 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.533 19.692 -5.180 20.519 hybrid contribution -1.339 -3.082 -0.397 3.384 sum -3.872 16.611 -5.577 17.944 Atomic orbital electron populations 1.20827 0.89901 1.03481 1.02735 1.20153 0.97305 0.92776 0.98980 1.21227 0.94183 0.97585 1.02075 1.20325 0.93935 0.96363 0.97532 1.20855 1.00279 0.92145 1.03417 1.21289 1.01518 0.90357 1.01514 1.19265 0.93109 0.93898 1.00359 1.26703 1.07314 0.99685 1.20033 1.69084 0.96459 1.02421 0.85987 1.92885 1.46477 1.86222 1.66517 1.24840 1.02587 1.07969 1.00752 0.98637 1.21479 0.97118 1.02855 0.96214 1.20795 1.36638 1.08442 0.91284 0.92268 1.25733 0.95361 0.96271 1.00456 1.69999 1.39484 1.15695 1.29483 0.85633 0.78478 0.78315 0.79507 1.20839 1.20389 1.17543 1.21018 0.94536 0.97833 1.04034 0.91043 0.89131 0.92172 0.83509 0.89909 0.90427 0.90075 0.82489 0.91079 0.82501 0.92217 0.93110 0.90961 0.92598 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 10.01 71.24 0.71 -1.70 16 2 C -0.09 -2.50 5.88 -19.87 -0.12 -2.62 16 3 C -0.13 -2.95 9.36 22.27 0.21 -2.74 16 4 C -0.08 -1.72 5.88 -19.86 -0.12 -1.84 16 5 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 6 C -0.13 -3.11 9.36 22.27 0.21 -2.90 16 7 C -0.07 -2.04 5.14 -19.87 -0.10 -2.14 16 8 C -0.40 -13.29 5.45 71.24 0.39 -12.90 16 9 S 1.25 51.69 12.57 -56.49 -0.71 50.98 16 10 O -0.93 -50.05 18.14 -148.98 -2.70 -52.75 16 11 C -0.24 -12.04 2.82 29.85 0.08 -11.95 16 12 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 13 C -0.12 -4.95 8.72 71.98 0.63 -4.33 16 14 C -0.53 -29.57 8.58 25.60 0.22 -29.35 16 15 H 0.06 3.23 7.71 -2.91 -0.02 3.21 16 16 C 0.02 1.28 5.30 84.66 0.45 1.73 16 17 N -0.91 -52.00 11.32 21.45 0.24 -51.75 16 18 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 22 C -0.15 -5.20 9.36 22.27 0.21 -4.99 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 25 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 26 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 29 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.07 2.59 8.08 -2.39 -0.02 2.57 16 32 H 0.16 4.02 6.84 -2.39 -0.02 4.00 16 33 H 0.06 2.94 6.07 -2.39 -0.01 2.93 16 34 H 0.05 1.74 6.51 -2.39 -0.02 1.72 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.09 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -76.25 321.36 3.38 -72.87 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.04 Total: 11.86 kcal Atomic # 6 Polarization: -79.95 SS G_CDS: 3.48 Total: -76.46 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.24 Total: -51.75 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -2.70 Total: -52.75 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.71 Total: 50.98 kcal Total: -76.25 3.38 -72.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094721168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.753 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds