Wall clock time and date at job start Mon Mar 30 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99481 * 2 1 4 4 C 1.38232 * 119.99866 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00317 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00069 * 359.86117 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 S 1.81398 * 109.47126 * 89.99763 * 8 7 6 10 10 O 1.42097 * 109.47242 * 296.39212 * 9 8 7 11 11 C 1.81394 * 103.00163 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47620 * 295.00246 * 11 9 8 13 13 C 1.53003 * 109.46813 * 55.00516 * 11 9 8 14 14 C 1.50705 * 109.47063 * 175.00122 * 11 9 8 15 15 H 1.07996 * 120.00219 * 0.02562 * 14 11 9 16 16 C 1.37881 * 119.99544 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00446 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99416 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47153 * 90.00337 * 18 16 14 20 20 H 1.48501 * 109.47155 * 210.00106 * 18 16 14 21 21 H 1.48493 * 109.47606 * 330.00060 * 18 16 14 22 22 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 23 23 H 1.08998 * 109.46764 * 270.01756 * 1 2 3 24 24 H 1.08993 * 109.47236 * 30.01617 * 1 2 3 25 25 H 1.09003 * 109.46896 * 150.02164 * 1 2 3 26 26 H 1.07997 * 120.00441 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.47060 * 269.88636 * 5 4 3 28 28 H 1.08998 * 109.46941 * 29.88580 * 5 4 3 29 29 H 1.08998 * 109.47482 * 149.88729 * 5 4 3 30 30 H 1.08000 * 119.99728 * 180.36512 * 6 4 3 31 31 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 32 32 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 33 33 H 1.08999 * 109.47558 * 59.99939 * 13 11 9 34 34 H 1.09004 * 109.46960 * 179.97438 * 13 11 9 35 35 H 1.09000 * 109.47266 * 299.99619 * 13 11 9 36 36 H 0.96999 * 119.99921 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0001 0.0018 7 6 3.5806 -1.1970 0.0027 8 6 4.3341 -2.5021 0.0047 9 16 4.6354 -3.0237 1.7158 10 8 5.4724 -2.0734 2.3603 11 6 5.5361 -4.5852 1.5138 12 1 4.8856 -5.3216 1.0418 13 6 6.7668 -4.3540 0.6346 14 6 5.9718 -5.0922 2.8645 15 1 5.7305 -4.5314 3.7553 16 6 6.6783 -6.2721 2.9628 17 7 6.9726 -6.9548 1.8780 18 14 7.2177 -6.9009 4.6371 19 1 6.1595 -7.7768 5.2013 20 1 8.4766 -7.6753 4.4930 21 1 7.4458 -5.7505 5.5479 22 6 2.1983 -1.1971 0.0018 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8898 -0.5140 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6581 2.1325 0.0004 27 1 4.5170 2.8159 -1.0289 28 1 3.7441 3.2627 0.5110 29 1 5.2857 2.3728 0.5141 30 1 5.3517 0.0003 0.0074 31 1 3.7455 -3.2623 -0.5087 32 1 5.2869 -2.3722 -0.5085 33 1 7.4174 -3.6177 1.1065 34 1 7.3083 -5.2922 0.5136 35 1 6.4517 -3.9873 -0.3423 36 1 7.4700 -7.7847 1.9472 37 1 1.6583 -2.1324 0.0021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094721169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:53 Heat of formation + Delta-G solvation = -36.989455 kcal Electronic energy + Delta-G solvation = -17644.195404 eV Core-core repulsion = 14898.233429 eV Total energy + Delta-G solvation = -2745.961975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40403 -34.61684 -33.99084 -33.42116 -33.32532 -30.42137 -27.89783 -26.61252 -26.56209 -25.21159 -21.49376 -20.63156 -20.57994 -16.75013 -16.31204 -16.09486 -15.61073 -15.18981 -14.40046 -14.32198 -13.81794 -13.57818 -13.20407 -13.15970 -12.91006 -12.68245 -12.63972 -12.51360 -11.96673 -11.76162 -11.54826 -11.31157 -11.03813 -10.97069 -10.87671 -10.80264 -10.67893 -10.33505 -10.25799 -9.23708 -9.20096 -8.52597 -8.39905 -8.12019 -7.10883 -6.11642 -4.23883 1.44870 1.52806 2.62769 3.25238 3.31966 3.38576 3.77958 3.94363 4.34347 4.72600 4.84086 4.90155 4.99518 5.18884 5.27699 5.36515 5.41037 5.56047 5.57160 5.62166 5.70984 5.74768 5.85354 5.91130 6.06979 6.32500 6.33652 6.55765 6.68712 6.71280 6.72024 6.77705 6.84690 7.20122 7.34228 7.65508 7.78329 8.12491 8.77560 9.41519 10.92661 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033216 B = 0.004472 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.775109 B = 6260.204408 C = 6477.479854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.038 4.038 8 C -0.420 4.420 9 S 1.203 4.797 10 O -0.853 6.853 11 C -0.229 4.229 12 H 0.079 0.921 13 C -0.142 4.142 14 C -0.507 4.507 15 H 0.063 0.937 16 C 0.071 3.929 17 N -0.883 5.883 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.126 4.126 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.091 0.909 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.158 11.240 -5.602 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.081 4.081 5 C -0.170 4.170 6 C -0.138 4.138 7 C -0.039 4.039 8 C -0.553 4.553 9 S 1.404 4.596 10 O -0.849 6.849 11 C -0.350 4.350 12 H 0.097 0.903 13 C -0.201 4.201 14 C -0.547 4.547 15 H 0.081 0.919 16 C -0.132 4.132 17 N -0.521 5.521 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.145 4.145 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.323 11.570 -4.845 17.584 hybrid contribution 2.476 -0.288 -0.383 2.522 sum -9.847 11.282 -5.227 15.861 Atomic orbital electron populations 1.20765 0.91302 1.02466 1.02294 1.19827 0.95821 0.93048 0.99659 1.20793 0.93340 0.97373 1.03707 1.19827 0.93832 0.95041 0.99427 1.20777 1.00105 0.94136 1.01977 1.20952 0.99827 0.91620 1.01441 1.19237 0.93416 0.93374 0.97855 1.26918 1.04482 1.00134 1.23732 1.69965 1.16306 0.88937 0.84350 1.93013 1.72335 1.57420 1.62119 1.24764 1.02172 1.06662 1.01378 0.90297 1.21846 0.99952 1.03295 0.95002 1.20498 1.36960 1.06965 0.90239 0.91888 1.24920 0.95117 0.96240 0.96967 1.69870 1.39191 1.15432 1.27594 0.86502 0.78254 0.79013 0.83843 1.20153 1.21068 1.19616 1.20917 0.93139 0.97835 1.02644 0.91153 0.91948 0.91488 0.86540 0.91455 0.91701 0.91513 0.86507 0.86432 0.89092 0.94968 0.89005 0.96854 0.92736 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.62 16 2 C -0.08 -1.03 5.88 -104.62 -0.62 -1.64 16 3 C -0.13 -1.68 9.36 -39.58 -0.37 -2.06 16 4 C -0.08 -1.14 5.88 -104.62 -0.62 -1.76 16 5 C -0.11 -1.27 10.01 36.01 0.36 -0.91 16 6 C -0.12 -1.96 9.36 -39.58 -0.37 -2.33 16 7 C -0.04 -0.60 5.14 -104.63 -0.54 -1.14 16 8 C -0.42 -6.97 5.45 36.01 0.20 -6.78 16 9 S 1.20 23.93 12.58 -107.50 -1.35 22.58 16 10 O -0.85 -21.81 18.12 -35.23 -0.64 -22.45 16 11 C -0.23 -5.46 2.82 -27.88 -0.08 -5.54 16 12 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 13 C -0.14 -3.50 8.72 37.16 0.32 -3.17 16 14 C -0.51 -13.81 8.57 -34.44 -0.30 -14.10 16 15 H 0.06 1.73 7.71 -52.49 -0.40 1.32 16 16 C 0.07 1.95 5.30 -17.82 -0.09 1.86 16 17 N -0.88 -24.65 11.32 55.43 0.63 -24.03 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.13 -1.70 9.36 -39.59 -0.37 -2.07 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.12 1.62 8.08 -51.93 -0.42 1.20 16 32 H 0.09 1.62 6.84 -51.92 -0.36 1.26 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 35 H 0.01 0.27 6.51 -51.93 -0.34 -0.07 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -33.43 321.34 -9.25 -42.69 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.61 Total: 0.50 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: -2.11 Total: -40.26 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.63 Total: -24.03 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.64 Total: -22.45 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 23.93 SS G_CDS: -1.35 Total: 22.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.43 -9.25 -42.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094721169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.700 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds