Wall clock time and date at job start Mon Mar 30 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99481 * 2 1 4 4 C 1.38232 * 119.99866 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00317 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00069 * 359.86117 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 S 1.81398 * 109.47126 * 89.99763 * 8 7 6 10 10 O 1.42097 * 109.47242 * 296.39212 * 9 8 7 11 11 C 1.81394 * 103.00163 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47620 * 295.00246 * 11 9 8 13 13 C 1.53003 * 109.46813 * 55.00516 * 11 9 8 14 14 C 1.50705 * 109.47063 * 175.00122 * 11 9 8 15 15 H 1.07996 * 120.00219 * 0.02562 * 14 11 9 16 16 C 1.37881 * 119.99544 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00446 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99416 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47153 * 90.00337 * 18 16 14 20 20 H 1.48501 * 109.47155 * 210.00106 * 18 16 14 21 21 H 1.48493 * 109.47606 * 330.00060 * 18 16 14 22 22 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 23 23 H 1.08998 * 109.46764 * 270.01756 * 1 2 3 24 24 H 1.08993 * 109.47236 * 30.01617 * 1 2 3 25 25 H 1.09003 * 109.46896 * 150.02164 * 1 2 3 26 26 H 1.07997 * 120.00441 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.47060 * 269.88636 * 5 4 3 28 28 H 1.08998 * 109.46941 * 29.88580 * 5 4 3 29 29 H 1.08998 * 109.47482 * 149.88729 * 5 4 3 30 30 H 1.08000 * 119.99728 * 180.36512 * 6 4 3 31 31 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 32 32 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 33 33 H 1.08999 * 109.47558 * 59.99939 * 13 11 9 34 34 H 1.09004 * 109.46960 * 179.97438 * 13 11 9 35 35 H 1.09000 * 109.47266 * 299.99619 * 13 11 9 36 36 H 0.96999 * 119.99921 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0001 0.0018 7 6 3.5806 -1.1970 0.0027 8 6 4.3341 -2.5021 0.0047 9 16 4.6354 -3.0237 1.7158 10 8 5.4724 -2.0734 2.3603 11 6 5.5361 -4.5852 1.5138 12 1 4.8856 -5.3216 1.0418 13 6 6.7668 -4.3540 0.6346 14 6 5.9718 -5.0922 2.8645 15 1 5.7305 -4.5314 3.7553 16 6 6.6783 -6.2721 2.9628 17 7 6.9726 -6.9548 1.8780 18 14 7.2177 -6.9009 4.6371 19 1 6.1595 -7.7768 5.2013 20 1 8.4766 -7.6753 4.4930 21 1 7.4458 -5.7505 5.5479 22 6 2.1983 -1.1971 0.0018 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8898 -0.5140 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6581 2.1325 0.0004 27 1 4.5170 2.8159 -1.0289 28 1 3.7441 3.2627 0.5110 29 1 5.2857 2.3728 0.5141 30 1 5.3517 0.0003 0.0074 31 1 3.7455 -3.2623 -0.5087 32 1 5.2869 -2.3722 -0.5085 33 1 7.4174 -3.6177 1.1065 34 1 7.3083 -5.2922 0.5136 35 1 6.4517 -3.9873 -0.3423 36 1 7.4700 -7.7847 1.9472 37 1 1.6583 -2.1324 0.0021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094721169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:53 Heat of formation + Delta-G solvation = -57.271665 kcal Electronic energy + Delta-G solvation = -17645.074907 eV Core-core repulsion = 14898.233429 eV Total energy + Delta-G solvation = -2746.841478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44487 -36.49777 -35.99423 -34.47045 -34.34016 -32.42729 -28.95320 -27.79466 -27.51947 -27.14241 -23.43236 -21.76725 -21.58393 -18.58010 -18.18336 -17.18365 -17.01541 -16.69073 -16.02691 -15.74720 -15.15020 -14.82667 -14.77337 -14.31940 -13.97979 -13.93913 -13.80035 -13.62124 -13.37791 -13.29638 -12.93804 -12.89304 -12.77132 -12.52781 -12.49088 -12.28087 -12.09744 -11.90526 -11.81802 -11.23490 -10.84353 -10.51762 -9.47030 -9.41837 -8.80707 -8.17518 -6.36567 0.26894 0.47702 1.12260 1.38313 1.39953 1.50693 2.12341 2.37930 2.85690 3.05835 3.18632 3.73632 3.87933 3.97722 4.25579 4.29789 4.45973 4.57644 4.58234 4.68678 4.69829 4.74458 4.76396 4.81009 4.86947 4.98196 5.00819 5.11567 5.31182 5.33834 5.41920 5.59691 5.64091 5.68627 5.71342 5.75215 6.10319 6.18100 6.71123 7.31284 8.85172 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033216 B = 0.004472 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.775109 B = 6260.204408 C = 6477.479854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.092 4.092 5 C -0.113 4.113 6 C -0.153 4.153 7 C -0.063 4.063 8 C -0.404 4.404 9 S 1.259 4.741 10 O -0.916 6.916 11 C -0.247 4.247 12 H 0.087 0.913 13 C -0.135 4.135 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.025 3.975 17 N -0.906 5.906 18 Si 0.952 3.048 19 H -0.258 1.258 20 H -0.282 1.282 21 H -0.279 1.279 22 C -0.129 4.129 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.003 0.997 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.265 0.735 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 11.963 -6.106 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 C -0.152 4.152 4 C -0.092 4.092 5 C -0.169 4.169 6 C -0.173 4.173 7 C -0.065 4.065 8 C -0.540 4.540 9 S 1.463 4.537 10 O -0.912 6.912 11 C -0.367 4.367 12 H 0.105 0.895 13 C -0.194 4.194 14 C -0.569 4.569 15 H 0.070 0.930 16 C -0.176 4.176 17 N -0.544 5.544 18 Si 0.777 3.223 19 H -0.182 1.182 20 H -0.207 1.207 21 H -0.204 1.204 22 C -0.148 4.148 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.164 0.836 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.172 0.828 32 H 0.094 0.906 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.117 12.262 -5.316 20.177 hybrid contribution 3.247 -0.369 -0.360 3.287 sum -11.870 11.893 -5.676 17.736 Atomic orbital electron populations 1.20849 0.88393 1.04015 1.03420 1.20316 0.97912 0.92389 0.97603 1.21214 0.92739 0.99016 1.02213 1.20153 0.94962 0.95121 0.98986 1.20826 0.99572 0.93508 1.03033 1.21013 0.98962 0.93369 1.03950 1.19272 0.94690 0.92352 1.00148 1.26715 1.04787 1.02129 1.20373 1.69104 1.13051 0.85784 0.85775 1.92903 1.73037 1.59101 1.66157 1.24899 1.02338 1.09673 0.99772 0.89517 1.21735 0.99847 1.01205 0.96572 1.20810 1.37388 1.07249 0.91450 0.93012 1.25657 0.95223 0.96542 1.00201 1.69961 1.39643 1.15713 1.29101 0.85643 0.78371 0.78348 0.79939 1.18207 1.20715 1.20403 1.21282 0.92043 0.99839 1.01657 0.90057 0.90369 0.90119 0.83613 0.90018 0.89584 0.92820 0.89073 0.82776 0.90567 0.97777 0.91357 0.93837 0.92587 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.24 0.71 -0.73 16 2 C -0.08 -1.74 5.88 -19.87 -0.12 -1.85 16 3 C -0.13 -2.97 9.36 22.27 0.21 -2.76 16 4 C -0.09 -2.49 5.88 -19.86 -0.12 -2.61 16 5 C -0.11 -2.41 10.01 71.24 0.71 -1.70 16 6 C -0.15 -5.11 9.36 22.27 0.21 -4.90 16 7 C -0.06 -1.96 5.14 -19.87 -0.10 -2.06 16 8 C -0.40 -13.04 5.45 71.24 0.39 -12.66 16 9 S 1.26 50.39 12.58 -56.49 -0.71 49.67 16 10 O -0.92 -48.40 18.12 -148.98 -2.70 -51.10 16 11 C -0.25 -11.96 2.82 29.85 0.08 -11.88 16 12 H 0.09 4.01 8.14 -2.39 -0.02 3.99 16 13 C -0.13 -6.80 8.72 71.98 0.63 -6.17 16 14 C -0.53 -29.45 8.57 25.60 0.22 -29.23 16 15 H 0.05 2.92 7.71 -2.91 -0.02 2.89 16 16 C 0.03 1.39 5.30 84.66 0.45 1.84 16 17 N -0.91 -51.21 11.32 21.45 0.24 -50.96 16 18 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 C -0.13 -3.12 9.36 22.27 0.21 -2.91 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 25 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 26 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 29 H 0.05 1.27 8.09 -2.39 -0.02 1.25 16 30 H 0.09 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.15 3.80 8.08 -2.39 -0.02 3.78 16 32 H 0.08 2.71 6.84 -2.39 -0.02 2.70 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 35 H 0.04 1.85 6.51 -2.39 -0.02 1.84 16 36 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -74.63 321.34 3.38 -71.25 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.04 Total: 13.03 kcal Atomic # 6 Polarization: -81.12 SS G_CDS: 3.48 Total: -77.63 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.24 Total: -50.96 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -2.70 Total: -51.10 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 50.39 SS G_CDS: -0.71 Total: 49.67 kcal Total: -74.63 3.38 -71.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094721169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.978 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds