Wall clock time and date at job start Mon Mar 30 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38230 * 119.99812 * 2 1 4 4 C 1.38234 * 119.99831 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99963 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00109 * 359.95887 * 4 3 2 7 7 C 1.38234 * 119.99764 * 0.02562 * 6 4 3 8 8 C 1.50707 * 120.00009 * 179.97438 * 7 6 4 9 9 S 1.81405 * 109.47048 * 89.99712 * 8 7 6 10 10 O 1.42098 * 109.47027 * 296.39044 * 9 8 7 11 11 C 1.81397 * 102.99852 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.47306 * 65.00115 * 11 9 8 13 13 C 1.53002 * 109.47115 * 304.99946 * 11 9 8 14 14 C 1.50705 * 109.46859 * 184.99931 * 11 9 8 15 15 H 1.07994 * 120.00050 * 5.46335 * 14 11 9 16 16 C 1.37875 * 119.99726 * 185.45355 * 14 11 9 17 17 N 1.31519 * 120.00086 * 9.57277 * 16 14 11 18 18 Si 1.86803 * 119.99965 * 189.56502 * 16 14 11 19 19 H 1.48497 * 109.47315 * 84.99600 * 18 16 14 20 20 H 1.48499 * 109.47154 * 205.00432 * 18 16 14 21 21 H 1.48510 * 109.46980 * 325.00011 * 18 16 14 22 22 C 1.38229 * 120.00332 * 0.25152 * 7 6 4 23 23 H 1.09003 * 109.47258 * 90.00245 * 1 2 3 24 24 H 1.09003 * 109.46949 * 209.99664 * 1 2 3 25 25 H 1.08997 * 109.47341 * 329.99669 * 1 2 3 26 26 H 1.08002 * 120.00067 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47506 * 269.98256 * 5 4 3 28 28 H 1.09001 * 109.47155 * 29.98257 * 5 4 3 29 29 H 1.09001 * 109.46848 * 149.97969 * 5 4 3 30 30 H 1.08002 * 120.00103 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.46963 * 330.00403 * 8 7 6 32 32 H 1.08994 * 109.47173 * 210.00226 * 8 7 6 33 33 H 1.09004 * 109.46682 * 184.29379 * 13 11 9 34 34 H 1.08998 * 109.47440 * 304.29676 * 13 11 9 35 35 H 1.08994 * 109.46861 * 64.29848 * 13 11 9 36 36 H 0.96999 * 120.00028 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00276 * 179.72288 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0000 -0.0002 7 6 3.5805 -1.1971 0.0001 8 6 4.3340 -2.5023 -0.0001 9 16 4.6371 -3.0258 1.7101 10 8 5.4749 -2.0763 2.3547 11 6 5.5389 -4.5864 1.5054 12 1 6.5013 -4.3906 1.0326 13 6 4.7224 -5.5357 0.6260 14 6 5.7616 -5.2186 2.8551 15 1 5.3219 -4.7773 3.7373 16 6 6.5266 -6.3606 2.9637 17 7 7.2145 -6.7920 1.9291 18 14 6.5861 -7.2948 4.5802 19 1 5.4350 -8.2300 4.6542 20 1 7.8543 -8.0630 4.6616 21 1 6.5163 -6.3336 5.7102 22 6 2.1983 -1.1972 -0.0051 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6581 2.1324 0.0004 27 1 4.5156 2.8166 -1.0289 28 1 3.7450 3.2621 0.5125 29 1 5.2865 2.3721 0.5127 30 1 5.3517 0.0000 -0.0010 31 1 5.2863 -2.3720 -0.5143 32 1 3.7448 -3.2619 -0.5137 33 1 5.2276 -6.4996 0.5654 34 1 3.7317 -5.6713 1.0599 35 1 4.6263 -5.1124 -0.3738 36 1 7.7530 -7.5952 2.0056 37 1 1.6583 -2.1325 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094721171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:58 Heat of formation + Delta-G solvation = -38.969322 kcal Electronic energy + Delta-G solvation = -17597.502031 eV Core-core repulsion = 14851.454202 eV Total energy + Delta-G solvation = -2746.047829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.40861 -34.64592 -33.97486 -33.42394 -33.33220 -30.51883 -27.90363 -26.61016 -26.56887 -25.17406 -21.63352 -20.61772 -20.59669 -16.79526 -16.22745 -16.10103 -15.64009 -15.14513 -14.41942 -14.29109 -13.79840 -13.51188 -13.42416 -13.21668 -12.89576 -12.68003 -12.66755 -12.51260 -12.16126 -11.81637 -11.50374 -11.33476 -11.06771 -10.89621 -10.86938 -10.79634 -10.65266 -10.44753 -10.30631 -9.29934 -9.16491 -8.54185 -8.40325 -8.13127 -7.10614 -6.17160 -4.23685 1.44009 1.52395 2.58508 3.25620 3.31889 3.36333 3.75617 3.93834 4.34061 4.69990 4.83863 4.89437 4.98926 5.17461 5.27526 5.37041 5.40529 5.53852 5.57135 5.61632 5.70487 5.74273 5.85577 5.90846 6.05600 6.31988 6.32960 6.50699 6.63383 6.68406 6.70896 6.72199 6.83934 7.19567 7.30666 7.55996 7.72035 8.04720 8.77145 9.40224 10.92396 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032624 B = 0.004483 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.063995 B = 6243.643488 C = 6509.377215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.133 4.133 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.038 4.038 8 C -0.420 4.420 9 S 1.201 4.799 10 O -0.859 6.859 11 C -0.229 4.229 12 H 0.052 0.948 13 C -0.117 4.117 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.073 3.927 17 N -0.881 5.881 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.125 4.125 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 10.690 -5.824 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.081 4.081 5 C -0.170 4.170 6 C -0.139 4.139 7 C -0.039 4.039 8 C -0.552 4.552 9 S 1.404 4.596 10 O -0.854 6.854 11 C -0.351 4.351 12 H 0.070 0.930 13 C -0.176 4.176 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.131 4.131 17 N -0.518 5.518 18 Si 0.723 3.277 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.144 4.144 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.199 11.061 -5.064 17.950 hybrid contribution 2.312 -0.424 -0.414 2.387 sum -10.887 10.638 -5.478 16.177 Atomic orbital electron populations 1.20768 0.91284 1.02741 1.02046 1.19830 0.95833 0.93036 0.99647 1.20798 0.93333 0.97387 1.03660 1.19824 0.93841 0.95033 0.99432 1.20777 1.00109 0.94130 1.01981 1.20952 0.99814 0.91644 1.01481 1.19233 0.93460 0.93322 0.97922 1.26922 1.04410 1.00254 1.23620 1.70032 1.16768 0.88374 0.84412 1.93006 1.72582 1.57518 1.62339 1.24698 1.03464 1.05153 1.01775 0.93000 1.21503 0.98910 1.02024 0.95180 1.20394 1.33414 1.10475 0.90636 0.91785 1.24925 0.94041 0.97285 0.96881 1.69973 1.27862 1.23368 1.30591 0.86532 0.77626 0.80009 0.83537 1.19992 1.21165 1.19589 1.20917 0.93113 0.97856 1.02557 0.91457 0.91279 0.91822 0.86518 0.91448 0.91684 0.91513 0.86530 0.89527 0.86097 0.90715 0.93530 0.96034 0.92676 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.08 -1.03 5.88 -104.62 -0.62 -1.64 16 3 C -0.13 -1.68 9.36 -39.59 -0.37 -2.05 16 4 C -0.08 -1.14 5.88 -104.62 -0.62 -1.76 16 5 C -0.11 -1.27 10.01 36.01 0.36 -0.91 16 6 C -0.12 -1.98 9.36 -39.58 -0.37 -2.35 16 7 C -0.04 -0.61 5.14 -104.62 -0.54 -1.15 16 8 C -0.42 -7.02 5.46 36.01 0.20 -6.82 16 9 S 1.20 24.31 12.57 -107.50 -1.35 22.95 16 10 O -0.86 -22.38 18.14 -35.23 -0.64 -23.02 16 11 C -0.23 -5.53 2.68 -27.88 -0.07 -5.60 16 12 H 0.05 1.43 8.09 -51.93 -0.42 1.01 16 13 C -0.12 -2.42 8.71 37.16 0.32 -2.10 16 14 C -0.51 -13.78 8.50 -34.44 -0.29 -14.08 16 15 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 16 C 0.07 2.00 5.16 -17.82 -0.09 1.91 16 17 N -0.88 -25.01 12.16 55.43 0.67 -24.33 16 18 Si 0.90 20.88 29.55 -169.99 -5.02 15.85 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.13 -1.70 9.36 -39.58 -0.37 -2.07 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.09 1.54 8.09 -51.92 -0.42 1.12 16 32 H 0.12 1.69 6.95 -51.93 -0.36 1.33 16 33 H 0.07 1.77 6.82 -51.93 -0.35 1.42 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.37 6.77 -51.93 -0.35 0.02 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -33.83 322.96 -9.23 -43.07 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.66 Total: -0.15 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: -2.10 Total: -39.24 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.67 Total: -24.33 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.64 Total: -23.02 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 24.31 SS G_CDS: -1.35 Total: 22.95 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.83 -9.23 -43.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094721171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.096 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds