Wall clock time and date at job start Mon Mar 30 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38230 * 119.99812 * 2 1 4 4 C 1.38234 * 119.99831 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99963 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00109 * 359.95887 * 4 3 2 7 7 C 1.38234 * 119.99764 * 0.02562 * 6 4 3 8 8 C 1.50707 * 120.00009 * 179.97438 * 7 6 4 9 9 S 1.81405 * 109.47048 * 89.99712 * 8 7 6 10 10 O 1.42098 * 109.47027 * 296.39044 * 9 8 7 11 11 C 1.81397 * 102.99852 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.47306 * 65.00115 * 11 9 8 13 13 C 1.53002 * 109.47115 * 304.99946 * 11 9 8 14 14 C 1.50705 * 109.46859 * 184.99931 * 11 9 8 15 15 H 1.07994 * 120.00050 * 5.46335 * 14 11 9 16 16 C 1.37875 * 119.99726 * 185.45355 * 14 11 9 17 17 N 1.31519 * 120.00086 * 9.57277 * 16 14 11 18 18 Si 1.86803 * 119.99965 * 189.56502 * 16 14 11 19 19 H 1.48497 * 109.47315 * 84.99600 * 18 16 14 20 20 H 1.48499 * 109.47154 * 205.00432 * 18 16 14 21 21 H 1.48510 * 109.46980 * 325.00011 * 18 16 14 22 22 C 1.38229 * 120.00332 * 0.25152 * 7 6 4 23 23 H 1.09003 * 109.47258 * 90.00245 * 1 2 3 24 24 H 1.09003 * 109.46949 * 209.99664 * 1 2 3 25 25 H 1.08997 * 109.47341 * 329.99669 * 1 2 3 26 26 H 1.08002 * 120.00067 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47506 * 269.98256 * 5 4 3 28 28 H 1.09001 * 109.47155 * 29.98257 * 5 4 3 29 29 H 1.09001 * 109.46848 * 149.97969 * 5 4 3 30 30 H 1.08002 * 120.00103 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.46963 * 330.00403 * 8 7 6 32 32 H 1.08994 * 109.47173 * 210.00226 * 8 7 6 33 33 H 1.09004 * 109.46682 * 184.29379 * 13 11 9 34 34 H 1.08998 * 109.47440 * 304.29676 * 13 11 9 35 35 H 1.08994 * 109.46861 * 64.29848 * 13 11 9 36 36 H 0.96999 * 120.00028 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00276 * 179.72288 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0000 -0.0002 7 6 3.5805 -1.1971 0.0001 8 6 4.3340 -2.5023 -0.0001 9 16 4.6371 -3.0258 1.7101 10 8 5.4749 -2.0763 2.3547 11 6 5.5389 -4.5864 1.5054 12 1 6.5013 -4.3906 1.0326 13 6 4.7224 -5.5357 0.6260 14 6 5.7616 -5.2186 2.8551 15 1 5.3219 -4.7773 3.7373 16 6 6.5266 -6.3606 2.9637 17 7 7.2145 -6.7920 1.9291 18 14 6.5861 -7.2948 4.5802 19 1 5.4350 -8.2300 4.6542 20 1 7.8543 -8.0630 4.6616 21 1 6.5163 -6.3336 5.7102 22 6 2.1983 -1.1972 -0.0051 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6581 2.1324 0.0004 27 1 4.5156 2.8166 -1.0289 28 1 3.7450 3.2621 0.5125 29 1 5.2865 2.3721 0.5127 30 1 5.3517 0.0000 -0.0010 31 1 5.2863 -2.3720 -0.5143 32 1 3.7448 -3.2619 -0.5137 33 1 5.2276 -6.4996 0.5654 34 1 3.7317 -5.6713 1.0599 35 1 4.6263 -5.1124 -0.3738 36 1 7.7530 -7.5952 2.0056 37 1 1.6583 -2.1325 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094721171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:58 Heat of formation + Delta-G solvation = -60.133925 kcal Electronic energy + Delta-G solvation = -17598.419797 eV Core-core repulsion = 14851.454202 eV Total energy + Delta-G solvation = -2746.965595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45576 -36.56474 -35.93700 -34.49020 -34.34503 -32.45580 -28.96477 -27.76457 -27.52858 -27.04236 -23.47872 -21.77682 -21.59143 -18.66934 -18.07882 -17.19663 -16.99058 -16.70199 -15.96187 -15.73455 -15.27078 -14.89025 -14.74100 -14.44977 -13.97563 -13.94226 -13.81070 -13.74490 -13.31669 -13.22168 -12.93149 -12.76056 -12.66441 -12.56381 -12.33535 -12.22610 -12.13362 -11.92622 -11.82605 -11.21744 -10.76140 -10.59322 -9.47948 -9.42515 -8.84695 -8.23418 -6.37086 0.24173 0.46892 1.06635 1.41588 1.42271 1.52431 2.08212 2.39493 2.84315 3.02253 3.15586 3.70838 3.86558 3.97207 4.23493 4.28732 4.45243 4.56878 4.66794 4.72949 4.73921 4.75669 4.80971 4.90294 4.96746 4.99424 5.00820 5.11361 5.30591 5.41882 5.42881 5.62435 5.62989 5.68538 5.74352 5.81905 6.08007 6.17343 6.72165 7.30450 8.85910 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032624 B = 0.004483 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.063995 B = 6243.643488 C = 6509.377215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.092 4.092 5 C -0.113 4.113 6 C -0.155 4.155 7 C -0.065 4.065 8 C -0.402 4.402 9 S 1.257 4.743 10 O -0.926 6.926 11 C -0.245 4.245 12 H 0.000 1.000 13 C -0.110 4.110 14 C -0.532 4.532 15 H 0.062 0.938 16 C 0.021 3.979 17 N -0.915 5.915 18 Si 0.958 3.042 19 H -0.254 1.254 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.127 4.127 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.147 0.853 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.264 0.736 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.619 11.315 -6.139 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 C -0.151 4.151 4 C -0.092 4.092 5 C -0.170 4.170 6 C -0.175 4.175 7 C -0.066 4.066 8 C -0.538 4.538 9 S 1.463 4.537 10 O -0.921 6.921 11 C -0.365 4.365 12 H 0.019 0.981 13 C -0.170 4.170 14 C -0.571 4.571 15 H 0.080 0.920 16 C -0.180 4.180 17 N -0.552 5.552 18 Si 0.782 3.218 19 H -0.178 1.178 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.146 4.146 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.165 0.835 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.726 11.659 -5.344 21.078 hybrid contribution 3.329 -0.445 -0.452 3.389 sum -13.397 11.214 -5.796 18.407 Atomic orbital electron populations 1.20856 0.88298 1.04122 1.03413 1.20327 0.97960 0.92346 0.97521 1.21226 0.92685 0.99080 1.02097 1.20151 0.95006 0.95071 0.98995 1.20828 0.99561 0.93508 1.03055 1.21017 0.98919 0.93468 1.04065 1.19269 0.94798 0.92220 1.00348 1.26709 1.04662 1.02342 1.20067 1.69010 1.13516 0.85251 0.85959 1.92889 1.73336 1.59361 1.66561 1.24867 1.02250 1.08598 1.00812 0.98147 1.21422 0.99501 0.99513 0.96521 1.20821 1.33429 1.10876 0.91955 0.91952 1.25779 0.93717 0.98223 1.00253 1.70101 1.28681 1.23819 1.32648 0.85574 0.78160 0.78829 0.79255 1.17783 1.21240 1.19639 1.21289 0.91911 0.99937 1.01483 0.89915 0.90034 0.90451 0.83529 0.89992 0.89512 0.92872 0.89216 0.91167 0.82376 0.94017 0.90064 0.92926 0.92686 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.08 -1.71 5.88 -19.86 -0.12 -1.82 16 3 C -0.13 -2.94 9.36 22.27 0.21 -2.73 16 4 C -0.09 -2.51 5.88 -19.87 -0.12 -2.62 16 5 C -0.11 -2.43 10.01 71.24 0.71 -1.71 16 6 C -0.16 -5.23 9.36 22.27 0.21 -5.02 16 7 C -0.07 -2.03 5.14 -19.87 -0.10 -2.13 16 8 C -0.40 -13.19 5.46 71.24 0.39 -12.80 16 9 S 1.26 51.49 12.57 -56.49 -0.71 50.78 16 10 O -0.93 -50.31 18.14 -148.98 -2.70 -53.01 16 11 C -0.24 -12.16 2.68 29.85 0.08 -12.08 16 12 H 0.00 0.00 8.09 -2.39 -0.02 -0.01 16 13 C -0.11 -4.52 8.71 71.98 0.63 -3.89 16 14 C -0.53 -29.46 8.50 25.60 0.22 -29.24 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 16 C 0.02 1.19 5.16 84.65 0.44 1.63 16 17 N -0.91 -53.57 12.16 21.45 0.26 -53.31 16 18 Si 0.96 43.21 29.55 68.60 2.03 45.24 16 19 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.13 -3.05 9.36 22.27 0.21 -2.84 16 23 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 25 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 26 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 29 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 30 H 0.09 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 32 H 0.16 3.94 6.95 -2.39 -0.02 3.93 16 33 H 0.04 1.98 6.82 -2.39 -0.02 1.97 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.05 1.77 6.77 -2.39 -0.02 1.75 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -77.98 322.96 3.38 -74.61 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.03 Total: 11.67 kcal Atomic # 6 Polarization: -79.44 SS G_CDS: 3.47 Total: -75.98 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.26 Total: -53.31 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -2.70 Total: -53.01 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 51.49 SS G_CDS: -0.71 Total: 50.78 kcal Total: -77.98 3.38 -74.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094721171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.474 kcal (2) G-P(sol) polarization free energy of solvation -77.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds