Wall clock time and date at job start Mon Mar 30 2020 07:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99983 * 2 1 4 4 C 1.53000 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47237 * 180.02562 * 4 3 2 6 6 S 1.81400 * 109.47374 * 179.97438 * 5 4 3 7 7 C 1.81402 * 103.00334 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46698 * 54.99773 * 7 6 5 9 9 C 1.50705 * 109.46901 * 295.00077 * 7 6 5 10 10 H 1.07994 * 120.00222 * 305.49889 * 9 7 6 11 11 C 1.37880 * 119.99565 * 125.49795 * 9 7 6 12 12 N 1.31519 * 119.99757 * 186.15592 * 11 9 7 13 13 Si 1.86799 * 120.00105 * 6.15100 * 11 9 7 14 14 H 1.48494 * 109.47242 * 266.08734 * 13 11 9 15 15 H 1.48497 * 109.47303 * 26.09358 * 13 11 9 16 16 H 1.48505 * 109.46879 * 146.09149 * 13 11 9 17 17 C 1.50697 * 109.47023 * 175.00403 * 7 6 5 18 18 C 1.38231 * 120.00220 * 55.00122 * 17 7 6 19 19 C 1.38236 * 119.99593 * 179.78777 * 18 17 7 20 20 C 1.38231 * 120.00432 * 0.44016 * 19 18 17 21 21 C 1.38233 * 119.99675 * 359.81456 * 20 19 18 22 22 C 1.38230 * 120.00153 * 359.97438 * 21 20 19 23 23 H 1.09009 * 109.47109 * 60.00021 * 1 2 3 24 24 H 1.08993 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47013 * 300.00077 * 1 2 3 26 26 H 1.08994 * 109.47418 * 59.99858 * 3 2 1 27 27 H 1.09007 * 109.47172 * 299.99942 * 3 2 1 28 28 H 1.08994 * 109.47393 * 59.99465 * 4 3 2 29 29 H 1.09002 * 109.46529 * 299.99426 * 4 3 2 30 30 H 1.09002 * 109.47277 * 59.99720 * 5 4 3 31 31 H 1.08999 * 109.47243 * 299.99827 * 5 4 3 32 32 H 0.97000 * 119.99564 * 180.02562 * 12 11 9 33 33 H 1.07994 * 120.00109 * 359.97438 * 18 17 7 34 34 H 1.08000 * 119.99532 * 180.27529 * 19 18 17 35 35 H 1.07997 * 120.00492 * 179.83419 * 20 19 18 36 36 H 1.08007 * 120.00035 * 179.97438 * 21 20 19 37 37 H 1.08006 * 120.00086 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 16 5.9661 2.4391 0.0000 7 6 6.5125 4.1689 0.0000 8 1 6.0599 4.6929 0.8418 9 6 6.0912 4.8288 -1.2877 10 1 6.3711 4.3921 -2.2350 11 6 5.3484 5.9899 -1.2564 12 7 4.8779 6.4999 -2.3737 13 14 5.0102 6.8387 0.3729 14 1 3.7031 6.3802 0.9079 15 1 6.0863 6.5020 1.3392 16 1 4.9724 8.3089 0.1666 17 6 8.0135 4.2216 0.1237 18 6 8.8058 3.5340 -0.7765 19 6 10.1827 3.5860 -0.6655 20 6 10.7671 4.3180 0.3511 21 6 9.9747 5.0012 1.2544 22 6 8.5979 4.9529 1.1409 23 1 -0.3634 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8568 0.6438 -0.8907 29 1 3.8574 0.6436 0.8892 30 1 3.8365 3.1227 0.8904 31 1 3.8359 3.1238 -0.8895 32 1 4.3556 7.3170 -2.3517 33 1 8.3492 2.9588 -1.5682 34 1 10.8018 3.0524 -1.3715 35 1 11.8428 4.3564 0.4394 36 1 10.4313 5.5728 2.0490 37 1 7.9788 5.4870 1.8465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111659156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:12 Heat of formation + Delta-G solvation = -40.336009 kcal Electronic energy + Delta-G solvation = -17418.171975 eV Core-core repulsion = 14672.064882 eV Total energy + Delta-G solvation = -2746.107093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.54497 -37.89818 -33.78476 -33.37641 -31.61547 -30.25390 -27.86521 -27.26823 -25.03322 -23.20111 -21.96327 -21.46265 -20.23999 -17.20504 -16.53485 -16.12851 -16.09403 -15.26121 -15.09391 -14.77899 -14.39454 -14.17622 -13.84924 -13.11876 -12.84885 -12.74293 -12.36813 -12.26349 -12.12767 -11.90570 -11.56569 -11.15410 -11.10980 -10.76881 -10.66010 -10.60349 -10.36667 -10.06009 -9.72905 -9.62329 -9.04726 -8.78630 -8.27453 -7.88846 -6.64423 -6.42315 -4.35596 1.94723 2.05594 2.79925 3.04233 3.15026 3.16366 3.68129 3.89024 4.11069 4.56790 5.01438 5.14468 5.18102 5.30314 5.44632 5.47640 5.49316 5.51106 5.57372 5.64216 5.71397 5.78139 5.87189 6.12599 6.14522 6.21580 6.32174 6.40677 6.57733 6.62920 6.73864 7.07619 7.13739 7.18582 7.20165 7.43183 7.67083 8.13701 8.68296 9.15130 10.67388 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.005757 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.202258 B = 4862.362855 C = 5865.975103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.098 4.098 5 C -0.066 4.066 6 S -0.338 6.338 7 C 0.098 3.902 8 H 0.059 0.941 9 C -0.485 4.485 10 H 0.090 0.910 11 C 0.080 3.920 12 N -0.870 5.870 13 Si 0.864 3.136 14 H -0.273 1.273 15 H -0.256 1.256 16 H -0.280 1.280 17 C -0.020 4.020 18 C -0.099 4.099 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.124 4.124 22 C -0.128 4.128 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.270 0.730 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 -5.875 6.052 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.136 4.136 5 C -0.214 4.214 6 S -0.104 6.104 7 C -0.027 4.027 8 H 0.077 0.923 9 C -0.527 4.527 10 H 0.108 0.892 11 C -0.128 4.128 12 N -0.506 5.506 13 Si 0.690 3.310 14 H -0.198 1.198 15 H -0.181 1.181 16 H -0.205 1.205 17 C -0.023 4.023 18 C -0.118 4.118 19 C -0.142 4.142 20 C -0.163 4.163 21 C -0.142 4.142 22 C -0.148 4.148 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.583 -6.878 5.994 9.142 hybrid contribution -1.229 2.101 0.688 2.530 sum -1.813 -4.778 6.682 8.412 Atomic orbital electron populations 1.22712 0.81418 1.02404 0.99935 1.87859 1.19391 1.28531 1.95447 1.22593 0.94224 0.84148 1.00400 1.21213 0.91980 0.96488 1.03928 1.22851 0.94978 0.98616 1.04961 1.86211 1.04888 1.21364 1.97962 1.20112 0.91005 0.90871 1.00701 0.92298 1.21083 1.31771 1.08328 0.91547 0.89231 1.25140 0.94440 0.96732 0.96450 1.69883 1.33112 1.20841 1.26725 0.87009 0.79443 0.79798 0.84703 1.19825 1.18100 1.20548 1.19881 0.95420 0.94089 0.92921 1.21013 0.92865 0.99017 0.98857 1.21050 0.94979 0.99863 0.98337 1.20903 0.98846 0.99847 0.96677 1.20936 0.93686 1.00209 0.99363 1.20996 0.94619 1.00625 0.98533 0.94104 0.89870 0.94269 0.93374 0.92900 0.90425 0.90911 0.91609 0.89114 0.91940 0.85784 0.86901 0.87148 0.87022 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.66 10.70 -35.23 -0.38 -6.04 16 3 C 0.06 0.92 5.94 37.16 0.22 1.15 16 4 C -0.10 -1.57 5.59 -26.73 -0.15 -1.72 16 5 C -0.07 -1.24 5.73 37.16 0.21 -1.03 16 6 S -0.34 -7.17 20.49 -107.50 -2.20 -9.37 16 7 C 0.10 2.26 2.32 -29.03 -0.07 2.20 16 8 H 0.06 1.36 4.39 -51.92 -0.23 1.13 16 9 C -0.49 -12.65 8.23 -34.44 -0.28 -12.93 16 10 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 11 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 12 N -0.87 -24.46 13.96 55.43 0.77 -23.69 16 13 Si 0.86 19.76 27.20 -169.99 -4.62 15.14 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.26 -5.60 5.74 56.52 0.32 -5.27 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 C -0.02 -0.44 4.77 -104.63 -0.50 -0.94 16 18 C -0.10 -2.00 8.91 -39.58 -0.35 -2.35 16 19 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 20 C -0.14 -2.34 10.05 -39.59 -0.40 -2.74 16 21 C -0.12 -2.10 10.05 -39.59 -0.40 -2.50 16 22 C -0.13 -2.52 9.67 -39.58 -0.38 -2.91 16 23 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 31 H 0.09 1.88 8.00 -51.92 -0.42 1.46 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.12 2.58 7.89 -52.49 -0.41 2.16 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.11 2.14 7.22 -52.48 -0.38 1.76 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -28.15 323.27 -8.76 -36.91 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.72 Total: 5.01 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.48 Total: -22.84 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.77 Total: -23.69 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.38 Total: -6.04 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.62 Total: 15.14 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -2.20 Total: -9.37 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.15 -8.76 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111659156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.421 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds