Wall clock time and date at job start Mon Mar 30 2020 07:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99983 * 2 1 4 4 C 1.53000 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47237 * 180.02562 * 4 3 2 6 6 S 1.81400 * 109.47374 * 179.97438 * 5 4 3 7 7 C 1.81402 * 103.00334 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46698 * 54.99773 * 7 6 5 9 9 C 1.50705 * 109.46901 * 295.00077 * 7 6 5 10 10 H 1.07994 * 120.00222 * 305.49889 * 9 7 6 11 11 C 1.37880 * 119.99565 * 125.49795 * 9 7 6 12 12 N 1.31519 * 119.99757 * 186.15592 * 11 9 7 13 13 Si 1.86799 * 120.00105 * 6.15100 * 11 9 7 14 14 H 1.48494 * 109.47242 * 266.08734 * 13 11 9 15 15 H 1.48497 * 109.47303 * 26.09358 * 13 11 9 16 16 H 1.48505 * 109.46879 * 146.09149 * 13 11 9 17 17 C 1.50697 * 109.47023 * 175.00403 * 7 6 5 18 18 C 1.38231 * 120.00220 * 55.00122 * 17 7 6 19 19 C 1.38236 * 119.99593 * 179.78777 * 18 17 7 20 20 C 1.38231 * 120.00432 * 0.44016 * 19 18 17 21 21 C 1.38233 * 119.99675 * 359.81456 * 20 19 18 22 22 C 1.38230 * 120.00153 * 359.97438 * 21 20 19 23 23 H 1.09009 * 109.47109 * 60.00021 * 1 2 3 24 24 H 1.08993 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47013 * 300.00077 * 1 2 3 26 26 H 1.08994 * 109.47418 * 59.99858 * 3 2 1 27 27 H 1.09007 * 109.47172 * 299.99942 * 3 2 1 28 28 H 1.08994 * 109.47393 * 59.99465 * 4 3 2 29 29 H 1.09002 * 109.46529 * 299.99426 * 4 3 2 30 30 H 1.09002 * 109.47277 * 59.99720 * 5 4 3 31 31 H 1.08999 * 109.47243 * 299.99827 * 5 4 3 32 32 H 0.97000 * 119.99564 * 180.02562 * 12 11 9 33 33 H 1.07994 * 120.00109 * 359.97438 * 18 17 7 34 34 H 1.08000 * 119.99532 * 180.27529 * 19 18 17 35 35 H 1.07997 * 120.00492 * 179.83419 * 20 19 18 36 36 H 1.08007 * 120.00035 * 179.97438 * 21 20 19 37 37 H 1.08006 * 120.00086 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 16 5.9661 2.4391 0.0000 7 6 6.5125 4.1689 0.0000 8 1 6.0599 4.6929 0.8418 9 6 6.0912 4.8288 -1.2877 10 1 6.3711 4.3921 -2.2350 11 6 5.3484 5.9899 -1.2564 12 7 4.8779 6.4999 -2.3737 13 14 5.0102 6.8387 0.3729 14 1 3.7031 6.3802 0.9079 15 1 6.0863 6.5020 1.3392 16 1 4.9724 8.3089 0.1666 17 6 8.0135 4.2216 0.1237 18 6 8.8058 3.5340 -0.7765 19 6 10.1827 3.5860 -0.6655 20 6 10.7671 4.3180 0.3511 21 6 9.9747 5.0012 1.2544 22 6 8.5979 4.9529 1.1409 23 1 -0.3634 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8568 0.6438 -0.8907 29 1 3.8574 0.6436 0.8892 30 1 3.8365 3.1227 0.8904 31 1 3.8359 3.1238 -0.8895 32 1 4.3556 7.3170 -2.3517 33 1 8.3492 2.9588 -1.5682 34 1 10.8018 3.0524 -1.3715 35 1 11.8428 4.3564 0.4394 36 1 10.4313 5.5728 2.0490 37 1 7.9788 5.4870 1.8465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111659156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:12 Heat of formation + Delta-G solvation = -55.122845 kcal Electronic energy + Delta-G solvation = -17418.813180 eV Core-core repulsion = 14672.064882 eV Total energy + Delta-G solvation = -2746.748298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99609 -38.97178 -35.62840 -34.72241 -33.37728 -31.67067 -29.52161 -28.38437 -26.17851 -25.01798 -23.39837 -22.81037 -21.77329 -19.18854 -17.83300 -17.41941 -17.23625 -16.96753 -16.43620 -16.16360 -15.97046 -15.45604 -15.29816 -14.89346 -14.34723 -14.24182 -13.90802 -13.78779 -13.43281 -13.15042 -13.10671 -12.90568 -12.32938 -12.17967 -12.03334 -12.01927 -11.95660 -11.81230 -11.54978 -10.87000 -10.67026 -10.66237 -9.69790 -9.39023 -8.46421 -8.37483 -6.42877 0.46201 0.62401 1.19006 1.24680 1.28260 1.36511 1.95410 2.20349 2.82033 3.03742 3.10110 3.86923 4.05739 4.10096 4.14667 4.17233 4.29366 4.33234 4.39353 4.44398 4.50079 4.52933 4.54456 4.69826 4.79389 4.82807 4.85594 5.03826 5.12879 5.14643 5.28592 5.31778 5.67994 5.71459 5.88719 6.11675 6.17396 6.26696 6.55359 7.11571 8.69944 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.005757 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.202258 B = 4862.362855 C = 5865.975103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.070 3.930 4 C -0.088 4.088 5 C -0.059 4.059 6 S -0.337 6.337 7 C 0.103 3.897 8 H 0.059 0.941 9 C -0.489 4.489 10 H 0.043 0.957 11 C 0.032 3.968 12 N -0.922 5.922 13 Si 0.918 3.082 14 H -0.261 1.261 15 H -0.239 1.239 16 H -0.279 1.279 17 C -0.054 4.054 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.144 4.144 23 H 0.046 0.954 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.272 0.728 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -6.075 8.527 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.008 4.008 4 C -0.127 4.127 5 C -0.208 4.208 6 S -0.104 6.104 7 C -0.023 4.023 8 H 0.077 0.923 9 C -0.531 4.531 10 H 0.061 0.939 11 C -0.171 4.171 12 N -0.560 5.560 13 Si 0.741 3.259 14 H -0.186 1.186 15 H -0.163 1.163 16 H -0.204 1.204 17 C -0.056 4.056 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.136 4.136 22 C -0.164 4.164 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.158 0.842 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.453 -7.089 8.469 11.054 hybrid contribution -1.465 2.011 -0.113 2.491 sum -1.012 -5.078 8.356 9.830 Atomic orbital electron populations 1.22961 0.79306 1.04030 1.00867 1.87815 1.21688 1.28226 1.95623 1.22460 0.92698 0.84609 1.01074 1.21092 0.93498 0.94359 1.03725 1.22902 0.93265 1.00396 1.04245 1.86127 1.07034 1.19324 1.97865 1.20028 0.92670 0.90996 0.98653 0.92328 1.20988 1.32144 1.08664 0.91263 0.93883 1.25851 0.94268 0.97248 0.99767 1.70009 1.35105 1.21798 1.29062 0.86138 0.80242 0.78568 0.80920 1.18557 1.16263 1.20410 1.19887 0.94453 0.96353 0.94920 1.21000 0.94547 0.99871 0.98674 1.21390 0.93786 0.99813 0.99229 1.21405 1.00980 0.97720 0.95032 1.21376 0.92507 0.99650 1.00084 1.21187 0.96300 1.00637 0.98244 0.93508 0.87996 0.92981 0.91911 0.93044 0.91399 0.90264 0.90518 0.91511 0.91858 0.87934 0.84198 0.82948 0.83309 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -11.35 10.70 -148.98 -1.59 -12.94 16 3 C 0.07 1.93 5.94 71.98 0.43 2.36 16 4 C -0.09 -2.81 5.59 30.59 0.17 -2.64 16 5 C -0.06 -2.27 5.73 71.98 0.41 -1.86 16 6 S -0.34 -14.55 20.49 -56.49 -1.16 -15.71 16 7 C 0.10 4.82 2.32 29.10 0.07 4.88 16 8 H 0.06 2.70 4.39 -2.39 -0.01 2.69 16 9 C -0.49 -26.78 8.23 25.60 0.21 -26.57 16 10 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 11 C 0.03 1.74 5.47 84.65 0.46 2.20 16 12 N -0.92 -54.25 13.96 21.45 0.30 -53.95 16 13 Si 0.92 40.86 27.20 68.60 1.87 42.73 16 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.24 -9.86 5.74 99.48 0.57 -9.29 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 C -0.05 -2.32 4.77 -19.87 -0.09 -2.41 16 18 C -0.12 -4.99 8.91 22.27 0.20 -4.79 16 19 C -0.12 -4.06 10.05 22.27 0.22 -3.84 16 20 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 21 C -0.12 -3.57 10.05 22.27 0.22 -3.35 16 22 C -0.14 -5.42 9.67 22.27 0.22 -5.20 16 23 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.07 2.87 8.00 -2.39 -0.02 2.85 16 32 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.10 4.51 7.89 -2.91 -0.02 4.49 16 34 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.12 4.18 7.22 -2.91 -0.02 4.16 16 Total: -1.00 -63.79 323.27 4.29 -59.49 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.89 Total: 23.43 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 3.99 Total: -43.06 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.30 Total: -53.95 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.59 Total: -12.94 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.87 Total: 42.73 kcal Atomic # 16 Polarization: -14.55 SS G_CDS: -1.16 Total: -15.71 kcal Total: -63.79 4.29 -59.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111659156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.371 kcal (2) G-P(sol) polarization free energy of solvation -63.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds