Wall clock time and date at job start Mon Mar 30 2020 07:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47161 * 2 1 4 4 C 1.50706 * 109.46835 * 120.00097 * 2 1 3 5 5 H 1.07998 * 119.99604 * 119.99819 * 4 2 1 6 6 C 1.37872 * 119.99932 * 299.99681 * 4 2 1 7 7 N 1.31517 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47057 * 119.99488 * 8 6 4 11 11 H 1.48502 * 109.47399 * 240.00156 * 8 6 4 12 12 O 1.45196 * 109.46901 * 239.99824 * 2 1 3 13 13 C 1.34234 * 116.99938 * 90.00275 * 12 2 1 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 2 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47257 * 179.97438 * 16 15 13 18 18 C 1.38246 * 119.97225 * 269.72469 * 17 16 15 19 19 C 1.38198 * 120.02580 * 179.72535 * 18 17 16 20 20 C 1.38467 * 119.97145 * 0.56870 * 19 18 17 21 21 F 1.35097 * 120.02437 * 179.68309 * 20 19 18 22 22 C 1.38461 * 119.94780 * 359.70584 * 20 19 18 23 23 C 1.38201 * 119.97499 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47130 * 300.00303 * 1 2 3 25 25 H 1.09001 * 109.46779 * 59.99791 * 1 2 3 26 26 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00188 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46932 * 300.00373 * 15 13 12 29 29 H 1.08997 * 109.47392 * 59.99712 * 15 13 12 30 30 H 1.09004 * 109.47330 * 299.99977 * 16 15 13 31 31 H 1.09005 * 109.47124 * 59.99773 * 16 15 13 32 32 H 1.07999 * 119.99127 * 359.97438 * 18 17 16 33 33 H 1.07995 * 120.01675 * 180.25619 * 19 18 17 34 34 H 1.07999 * 120.01519 * 179.97438 * 22 20 19 35 35 H 1.07996 * 119.98714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6038 10 1 3.1466 -0.1875 4.8165 11 1 1.1659 -1.5866 4.8161 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9983 1.2518 -2.2503 15 6 2.7193 -0.5771 -3.5492 16 6 2.8644 0.4891 -4.6368 17 6 3.3672 -0.1518 -5.9047 18 6 4.7263 -0.2406 -6.1418 19 6 5.1886 -0.8332 -7.3015 20 6 4.2898 -1.3277 -8.2315 21 9 4.7405 -1.9015 -9.3685 22 6 2.9287 -1.2331 -7.9955 23 6 2.4689 -0.6460 -6.8320 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7082 1.1609 3.4844 28 1 3.6884 -1.0401 -3.3631 29 1 2.0105 -1.3373 -3.8774 30 1 1.8955 0.9525 -4.8230 31 1 3.5735 1.2490 -4.3083 32 1 5.4271 0.1497 -5.4187 33 1 6.2504 -0.9062 -7.4847 34 1 2.2267 -1.6180 -8.7204 35 1 1.4073 -0.5725 -6.6476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113688209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:50 Heat of formation + Delta-G solvation = -127.910424 kcal Electronic energy + Delta-G solvation = -18955.150533 eV Core-core repulsion = 15639.032753 eV Total energy + Delta-G solvation = -3316.117781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.09256 -39.79164 -39.15293 -35.89953 -33.86042 -33.25767 -31.36664 -30.02684 -29.13173 -25.36966 -24.92623 -23.28229 -21.93421 -20.95256 -19.47882 -17.88229 -17.07260 -16.68112 -16.59042 -15.80146 -15.66368 -15.45795 -15.13523 -14.45385 -14.16310 -13.95810 -13.69946 -13.19670 -13.05799 -12.79691 -12.17329 -11.88945 -11.79848 -11.54315 -11.37445 -11.19484 -11.07938 -10.93202 -10.83421 -10.37163 -10.29782 -9.67278 -9.54256 -9.34548 -8.91434 -8.74107 -8.51095 -6.20059 -4.26988 0.89776 0.99727 2.99129 3.22450 3.28004 3.30621 3.35076 3.70632 4.04478 4.31761 4.48257 4.62885 4.73006 4.98784 5.02502 5.09407 5.13070 5.25366 5.51755 5.63880 5.81328 5.84351 5.87375 5.89041 6.00950 6.13639 6.37887 6.62679 6.66755 6.86918 6.90114 7.16599 7.58992 7.71550 7.92925 8.13002 8.62557 8.87651 9.38758 10.87430 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043298 B = 0.003107 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.519541 B = 9008.941904 C = 9287.536042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.358 6.358 13 C 0.450 3.550 14 O -0.524 6.524 15 C -0.111 4.111 16 C -0.070 4.070 17 C -0.086 4.086 18 C -0.086 4.086 19 C -0.152 4.152 20 C 0.088 3.912 21 F -0.144 7.144 22 C -0.152 4.152 23 C -0.086 4.086 24 H 0.099 0.901 25 H 0.016 0.984 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -3.384 -18.378 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.274 6.274 13 C 0.293 3.707 14 O -0.414 6.414 15 C -0.148 4.148 16 C -0.107 4.107 17 C -0.086 4.086 18 C -0.104 4.104 19 C -0.170 4.170 20 C 0.069 3.931 21 F -0.122 7.122 22 C -0.171 4.171 23 C -0.104 4.104 24 H 0.117 0.883 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.726 -2.947 -18.207 19.040 hybrid contribution 0.276 -0.424 0.634 0.811 sum 5.002 -3.371 -17.573 18.579 Atomic orbital electron populations 1.22161 0.97592 1.00089 1.01401 1.20635 0.91386 0.93912 0.77883 0.93572 1.21080 1.32425 1.13454 0.88932 0.91260 1.24897 0.94937 0.95103 0.99109 1.69908 1.36112 1.22625 1.24082 0.86219 0.78637 0.79500 0.81783 1.19461 1.20751 1.20703 1.86487 1.75705 1.43741 1.21445 1.23346 0.74975 0.86028 0.86312 1.90599 1.48960 1.17003 1.84862 1.21308 1.03885 0.99206 0.90447 1.20417 1.03371 0.96896 0.90041 1.20014 0.93361 0.98792 0.96471 1.21012 0.95321 0.97705 0.96372 1.21152 0.99982 1.01247 0.94669 1.17747 0.92817 0.98621 0.83892 1.91489 1.89867 1.82454 1.48411 1.21145 0.93757 1.02719 0.99453 1.21000 1.00302 0.96587 0.92559 0.88251 0.96539 0.94444 0.92447 0.88117 0.88204 0.89729 0.89676 0.84706 0.84781 0.84798 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.33 37.16 0.35 -3.56 16 2 C 0.21 5.73 2.56 -27.88 -0.07 5.66 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.60 8.90 -34.44 -0.31 -14.91 16 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.59 16 8 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 O -0.36 -8.38 9.86 -39.27 -0.39 -8.77 16 13 C 0.45 8.94 7.93 36.01 0.29 9.23 16 14 O -0.52 -11.82 15.20 -18.75 -0.28 -12.11 16 15 C -0.11 -1.48 5.79 -27.89 -0.16 -1.64 16 16 C -0.07 -0.82 4.63 -27.89 -0.13 -0.94 16 17 C -0.09 -0.87 5.13 -104.62 -0.54 -1.40 16 18 C -0.09 -0.81 9.70 -39.59 -0.38 -1.19 16 19 C -0.15 -1.40 10.03 -39.51 -0.40 -1.80 16 20 C 0.09 0.89 7.30 -39.41 -0.29 0.60 16 21 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 22 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 23 C -0.09 -0.80 9.70 -39.59 -0.38 -1.18 16 24 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -30.92 311.07 -7.30 -38.22 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.45 Total: -0.54 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.52 Total: -11.35 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.63 Total: -24.59 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.67 Total: -20.88 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.92 -7.30 -38.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.689 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds