Wall clock time and date at job start Mon Mar 30 2020 07:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47161 * 2 1 4 4 C 1.50706 * 109.46835 * 120.00097 * 2 1 3 5 5 H 1.07998 * 119.99604 * 119.99819 * 4 2 1 6 6 C 1.37872 * 119.99932 * 299.99681 * 4 2 1 7 7 N 1.31517 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47057 * 119.99488 * 8 6 4 11 11 H 1.48502 * 109.47399 * 240.00156 * 8 6 4 12 12 O 1.45196 * 109.46901 * 239.99824 * 2 1 3 13 13 C 1.34234 * 116.99938 * 90.00275 * 12 2 1 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 2 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47257 * 179.97438 * 16 15 13 18 18 C 1.38246 * 119.97225 * 269.72469 * 17 16 15 19 19 C 1.38198 * 120.02580 * 179.72535 * 18 17 16 20 20 C 1.38467 * 119.97145 * 0.56870 * 19 18 17 21 21 F 1.35097 * 120.02437 * 179.68309 * 20 19 18 22 22 C 1.38461 * 119.94780 * 359.70584 * 20 19 18 23 23 C 1.38201 * 119.97499 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47130 * 300.00303 * 1 2 3 25 25 H 1.09001 * 109.46779 * 59.99791 * 1 2 3 26 26 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00188 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46932 * 300.00373 * 15 13 12 29 29 H 1.08997 * 109.47392 * 59.99712 * 15 13 12 30 30 H 1.09004 * 109.47330 * 299.99977 * 16 15 13 31 31 H 1.09005 * 109.47124 * 59.99773 * 16 15 13 32 32 H 1.07999 * 119.99127 * 359.97438 * 18 17 16 33 33 H 1.07995 * 120.01675 * 180.25619 * 19 18 17 34 34 H 1.07999 * 120.01519 * 179.97438 * 22 20 19 35 35 H 1.07996 * 119.98714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6038 10 1 3.1466 -0.1875 4.8165 11 1 1.1659 -1.5866 4.8161 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9983 1.2518 -2.2503 15 6 2.7193 -0.5771 -3.5492 16 6 2.8644 0.4891 -4.6368 17 6 3.3672 -0.1518 -5.9047 18 6 4.7263 -0.2406 -6.1418 19 6 5.1886 -0.8332 -7.3015 20 6 4.2898 -1.3277 -8.2315 21 9 4.7405 -1.9015 -9.3685 22 6 2.9287 -1.2331 -7.9955 23 6 2.4689 -0.6460 -6.8320 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7082 1.1609 3.4844 28 1 3.6884 -1.0401 -3.3631 29 1 2.0105 -1.3373 -3.8774 30 1 1.8955 0.9525 -4.8230 31 1 3.5735 1.2490 -4.3083 32 1 5.4271 0.1497 -5.4187 33 1 6.2504 -0.9062 -7.4847 34 1 2.2267 -1.6180 -8.7204 35 1 1.4073 -0.5725 -6.6476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113688209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:50 Heat of formation + Delta-G solvation = -143.456640 kcal Electronic energy + Delta-G solvation = -18955.824668 eV Core-core repulsion = 15639.032753 eV Total energy + Delta-G solvation = -3316.791915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.87235 -41.31867 -40.08320 -37.67571 -35.32347 -34.88552 -32.05812 -31.80393 -30.36277 -27.46218 -26.06819 -23.97898 -23.47111 -22.10552 -21.10795 -18.85387 -18.64065 -18.43774 -17.51508 -17.27546 -16.92146 -16.57152 -16.39015 -16.05114 -15.05333 -15.00225 -14.74979 -14.41225 -14.30603 -14.10232 -13.73007 -13.57420 -13.14980 -13.00737 -12.83476 -12.67178 -12.44988 -12.37244 -12.18662 -12.13544 -11.79029 -11.55998 -11.31813 -10.96809 -10.59953 -10.03445 -9.52439 -8.28806 -6.45669 0.14026 0.30887 1.39008 1.42745 1.43355 1.57183 2.06593 2.42312 2.65332 3.01944 3.32285 3.72156 3.78368 3.95766 4.00791 4.11650 4.28100 4.38624 4.44703 4.53533 4.63289 4.78996 4.84406 4.87458 5.03098 5.04982 5.17405 5.19397 5.20605 5.30448 5.49890 5.61570 5.64638 5.93904 5.95620 6.12812 6.60671 7.00580 7.27119 8.79042 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043298 B = 0.003107 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.519541 B = 9008.941904 C = 9287.536042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.216 3.784 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.983 3.017 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.272 1.272 12 O -0.367 6.367 13 C 0.443 3.557 14 O -0.555 6.555 15 C -0.097 4.097 16 C -0.062 4.062 17 C -0.092 4.092 18 C -0.089 4.089 19 C -0.154 4.154 20 C 0.073 3.927 21 F -0.150 7.150 22 C -0.154 4.154 23 C -0.088 4.088 24 H 0.079 0.921 25 H 0.025 0.975 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 -4.664 -18.844 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.025 0.975 4 C -0.586 4.586 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.806 3.194 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.197 1.197 12 O -0.283 6.283 13 C 0.289 3.711 14 O -0.447 6.447 15 C -0.134 4.134 16 C -0.099 4.099 17 C -0.092 4.092 18 C -0.107 4.107 19 C -0.173 4.173 20 C 0.054 3.946 21 F -0.129 7.129 22 C -0.172 4.172 23 C -0.105 4.105 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.267 -4.229 -18.703 19.886 hybrid contribution 0.119 0.026 0.686 0.696 sum 5.386 -4.203 -18.018 19.269 Atomic orbital electron populations 1.21984 0.96804 1.00400 1.00846 1.20317 0.92010 0.92040 0.79362 0.97486 1.21358 1.33325 1.13868 0.90056 0.91422 1.25844 0.94734 0.95678 1.02211 1.70024 1.36642 1.23735 1.25158 0.85127 0.78339 0.78430 0.77460 1.18659 1.20152 1.19707 1.86480 1.76186 1.43971 1.21682 1.24650 0.73787 0.85828 0.86854 1.90584 1.50256 1.18591 1.85273 1.21459 1.05062 0.99796 0.87113 1.20302 1.03100 0.96272 0.90222 1.19883 0.93871 0.99526 0.95966 1.21186 0.95346 0.97447 0.96692 1.21345 1.00830 1.00764 0.94340 1.18014 0.93513 0.99091 0.83966 1.91472 1.89990 1.82650 1.48813 1.21351 0.93786 1.02353 0.99738 1.21187 1.01053 0.96044 0.92265 0.90202 0.95622 0.93532 0.92008 0.86057 0.85752 0.90194 0.90428 0.83424 0.83254 0.83163 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.31 9.33 71.98 0.67 -6.64 16 2 C 0.22 11.82 2.56 29.85 0.08 11.89 16 3 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 4 C -0.55 -31.06 8.90 25.60 0.23 -30.83 16 5 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 8 Si 0.98 42.58 29.54 68.60 2.03 44.61 16 9 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 12 O -0.37 -17.25 9.86 -51.46 -0.51 -17.76 16 13 C 0.44 17.51 7.93 71.24 0.56 18.08 16 14 O -0.56 -25.50 15.20 21.98 0.33 -25.16 16 15 C -0.10 -2.42 5.79 29.85 0.17 -2.24 16 16 C -0.06 -1.34 4.63 29.85 0.14 -1.20 16 17 C -0.09 -1.66 5.13 -19.86 -0.10 -1.77 16 18 C -0.09 -1.48 9.70 22.26 0.22 -1.26 16 19 C -0.15 -2.55 10.03 22.32 0.22 -2.33 16 20 C 0.07 1.35 7.30 22.38 0.16 1.51 16 21 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 22 C -0.15 -2.50 10.03 22.31 0.22 -2.28 16 23 C -0.09 -1.42 9.70 22.26 0.22 -1.20 16 24 H 0.08 4.40 6.07 -2.39 -0.01 4.39 16 25 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 1.82 8.04 -2.38 -0.02 1.80 16 31 H 0.08 1.81 8.04 -2.38 -0.02 1.79 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -67.00 311.07 7.20 -59.80 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.09 Total: 10.12 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 3.24 Total: -17.00 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.24 Total: -52.34 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.17 Total: -42.92 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -67.00 7.20 -59.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113688209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.652 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds