Wall clock time and date at job start Mon Mar 30 2020 07:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.50701 * 109.47238 * 119.99743 * 2 1 3 5 5 O 1.20827 * 119.99913 * 119.99996 * 4 2 1 6 6 O 1.34234 * 120.00021 * 300.00121 * 4 2 1 7 7 C 1.45199 * 116.99811 * 179.97438 * 6 4 2 8 8 H 1.08998 * 109.47398 * 330.00212 * 7 6 4 9 9 C 1.53002 * 109.46775 * 90.00213 * 7 6 4 10 10 C 1.50695 * 109.46993 * 210.00091 * 7 6 4 11 11 H 1.08001 * 120.00421 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00023 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99895 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00204 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47136 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47307 * 119.99856 * 14 12 10 17 17 H 1.48497 * 109.47052 * 239.99872 * 14 12 10 18 18 C 1.50697 * 109.47090 * 239.99709 * 2 1 3 19 19 C 1.38216 * 120.01502 * 299.98000 * 18 2 1 20 20 C 1.38226 * 120.02514 * 180.02562 * 19 18 2 21 21 C 1.38265 * 120.05353 * 0.02562 * 20 19 18 22 22 C 1.38177 * 120.02212 * 359.70277 * 21 20 19 23 23 C 1.38436 * 120.00925 * 119.99755 * 18 2 1 24 24 F 1.35104 * 120.02854 * 359.95937 * 23 18 2 25 25 H 1.08995 * 109.47383 * 59.99834 * 1 2 3 26 26 H 1.09003 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47028 * 300.00277 * 1 2 3 28 28 H 1.08998 * 109.47159 * 59.99853 * 9 7 6 29 29 H 1.08998 * 109.46805 * 180.02562 * 9 7 6 30 30 H 1.08997 * 109.47126 * 299.99690 * 9 7 6 31 31 H 0.97005 * 119.99785 * 180.02562 * 13 12 10 32 32 H 1.08002 * 119.98614 * 0.03902 * 19 18 2 33 33 H 1.08001 * 119.97063 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.98907 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.01627 * 180.27269 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7271 -1.6927 1.1196 6 8 1.7081 -0.2517 2.4497 7 6 2.2268 -0.9862 3.5897 8 1 2.3403 -2.0372 3.3238 9 6 3.5871 -0.4117 3.9903 10 6 1.2685 -0.8613 4.7460 11 1 0.3602 -0.2877 4.6350 12 6 1.5513 -1.4794 5.9456 13 7 2.6571 -2.1784 6.0806 14 14 0.3631 -1.3252 7.3787 15 1 -0.7973 -0.4923 6.9722 16 1 -0.1111 -2.6752 7.7761 17 1 1.0532 -0.6849 8.5271 18 6 2.0323 -0.7105 -1.2304 19 6 1.6990 -2.0339 -1.4492 20 6 2.1600 -2.6859 -2.5774 21 6 2.9556 -2.0154 -3.4881 22 6 3.2855 -0.6908 -3.2743 23 6 2.8282 -0.0379 -2.1418 24 9 3.1543 1.2559 -1.9293 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.4736 0.6392 4.2563 29 1 3.9768 -0.9634 4.8458 30 1 4.2803 -0.5021 3.1540 31 1 2.8559 -2.6135 6.9244 32 1 1.0778 -2.5586 -0.7384 33 1 1.8993 -3.7201 -2.7473 34 1 3.3155 -2.5260 -4.3690 35 1 3.9032 -0.1659 -3.9880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:05 Heat of formation + Delta-G solvation = -119.352885 kcal Electronic energy + Delta-G solvation = -20039.958516 eV Core-core repulsion = 16724.211818 eV Total energy + Delta-G solvation = -3315.746698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.91021 -40.03540 -38.69479 -35.81488 -34.18877 -33.21845 -30.56085 -29.83410 -29.16187 -25.35410 -24.90344 -23.03412 -22.49622 -20.90802 -19.35146 -17.67349 -17.08433 -16.68004 -16.20329 -15.89453 -15.56552 -15.17682 -14.93028 -14.48987 -14.09538 -13.72607 -13.23427 -13.06130 -12.82338 -12.27706 -12.11790 -12.10816 -11.89207 -11.75764 -11.23679 -11.13027 -11.00655 -10.90405 -10.81657 -10.36180 -10.28639 -9.60064 -9.50430 -8.95709 -8.90120 -8.66846 -8.50095 -6.19154 -4.26060 1.11141 1.21518 2.97924 3.22945 3.29383 3.33733 3.44318 3.81808 4.23640 4.33474 4.47113 4.71723 4.90668 5.13895 5.15147 5.22433 5.28008 5.37419 5.54343 5.84570 5.87909 5.92903 6.03163 6.08107 6.25356 6.36086 6.41933 6.64204 6.85658 6.89659 6.92007 7.16879 7.59477 7.72378 7.93223 8.13581 8.63065 8.88181 9.39529 10.88333 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.004481 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.911788 B = 6247.024422 C = 6291.210217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 H 0.113 0.887 4 C 0.458 3.542 5 O -0.514 6.514 6 O -0.353 6.353 7 C 0.215 3.785 8 H 0.046 0.954 9 C -0.155 4.155 10 C -0.520 4.520 11 H 0.069 0.931 12 C 0.062 3.938 13 N -0.889 5.889 14 Si 0.911 3.089 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.281 1.281 18 C -0.100 4.100 19 C -0.055 4.055 20 C -0.131 4.131 21 C -0.093 4.093 22 C -0.159 4.159 23 C 0.105 3.895 24 F -0.139 7.139 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 2.208 -16.926 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 H 0.131 0.869 4 C 0.300 3.700 5 O -0.403 6.403 6 O -0.269 6.269 7 C 0.163 3.837 8 H 0.064 0.936 9 C -0.213 4.213 10 C -0.558 4.558 11 H 0.088 0.912 12 C -0.140 4.140 13 N -0.527 5.527 14 Si 0.738 3.262 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.101 4.101 19 C -0.073 4.073 20 C -0.149 4.149 21 C -0.111 4.111 22 C -0.178 4.178 23 C 0.085 3.915 24 F -0.117 7.117 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.768 1.856 -16.740 16.935 hybrid contribution -0.180 0.167 0.904 0.937 sum -1.948 2.023 -15.836 16.083 Atomic orbital electron populations 1.21747 0.90993 1.03224 1.03446 1.19856 0.98600 1.00437 0.88121 0.86907 1.23026 0.78014 0.82912 0.86066 1.90610 1.35927 1.26170 1.87636 1.86477 1.69064 1.56539 1.14789 1.20648 0.92199 0.91781 0.79100 0.93592 1.22162 0.97035 1.00619 1.01474 1.21063 1.06397 1.33123 0.95194 0.91233 1.24894 0.95836 0.94667 0.98604 1.69915 1.24049 1.32678 1.26062 0.86224 0.80620 0.77977 0.81348 1.19452 1.20753 1.20715 1.19460 0.99684 0.95438 0.95497 1.20912 0.97658 0.92537 0.96240 1.21183 0.98824 1.00363 0.94579 1.20979 0.97305 0.93463 0.99380 1.21042 1.03284 0.96047 0.97396 1.17508 0.98705 0.79076 0.96170 1.91477 1.91034 1.34365 1.94848 0.91483 0.91844 0.90150 0.94411 0.88235 0.96570 0.92459 0.85036 0.85317 0.85202 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.94 37.16 0.33 -1.48 16 2 C -0.05 -0.82 2.99 -92.92 -0.28 -1.09 16 3 H 0.11 1.71 7.13 -51.93 -0.37 1.34 16 4 C 0.46 9.69 7.10 36.01 0.26 9.95 16 5 O -0.51 -12.15 14.33 -18.75 -0.27 -12.42 16 6 O -0.35 -8.44 9.77 -39.27 -0.38 -8.82 16 7 C 0.21 5.82 2.56 -27.88 -0.07 5.75 16 8 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 9 C -0.16 -4.02 9.33 37.16 0.35 -3.67 16 10 C -0.52 -14.60 8.90 -34.44 -0.31 -14.90 16 11 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 12 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 14 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.10 -1.50 4.40 -104.56 -0.46 -1.96 16 19 C -0.06 -0.78 7.93 -39.59 -0.31 -1.09 16 20 C -0.13 -1.51 10.04 -39.58 -0.40 -1.90 16 21 C -0.09 -0.97 10.04 -39.59 -0.40 -1.36 16 22 C -0.16 -1.83 10.03 -39.51 -0.40 -2.23 16 23 C 0.10 1.47 7.25 -39.42 -0.29 1.19 16 24 F -0.14 -2.01 16.19 2.25 0.04 -1.97 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.82 7.39 -51.93 -0.38 0.44 16 27 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.13 1.86 7.52 -52.49 -0.39 1.47 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -31.02 305.37 -6.81 -37.83 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.34 Total: 0.69 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.07 Total: -11.20 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.63 Total: -24.72 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.65 Total: -21.25 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.02 -6.81 -37.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.522 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds