Wall clock time and date at job start Mon Mar 30 2020 07:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.50701 * 109.47238 * 119.99743 * 2 1 3 5 5 O 1.20827 * 119.99913 * 119.99996 * 4 2 1 6 6 O 1.34234 * 120.00021 * 300.00121 * 4 2 1 7 7 C 1.45199 * 116.99811 * 179.97438 * 6 4 2 8 8 H 1.08998 * 109.47398 * 330.00212 * 7 6 4 9 9 C 1.53002 * 109.46775 * 90.00213 * 7 6 4 10 10 C 1.50695 * 109.46993 * 210.00091 * 7 6 4 11 11 H 1.08001 * 120.00421 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00023 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99895 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00204 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47136 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47307 * 119.99856 * 14 12 10 17 17 H 1.48497 * 109.47052 * 239.99872 * 14 12 10 18 18 C 1.50697 * 109.47090 * 239.99709 * 2 1 3 19 19 C 1.38216 * 120.01502 * 299.98000 * 18 2 1 20 20 C 1.38226 * 120.02514 * 180.02562 * 19 18 2 21 21 C 1.38265 * 120.05353 * 0.02562 * 20 19 18 22 22 C 1.38177 * 120.02212 * 359.70277 * 21 20 19 23 23 C 1.38436 * 120.00925 * 119.99755 * 18 2 1 24 24 F 1.35104 * 120.02854 * 359.95937 * 23 18 2 25 25 H 1.08995 * 109.47383 * 59.99834 * 1 2 3 26 26 H 1.09003 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47028 * 300.00277 * 1 2 3 28 28 H 1.08998 * 109.47159 * 59.99853 * 9 7 6 29 29 H 1.08998 * 109.46805 * 180.02562 * 9 7 6 30 30 H 1.08997 * 109.47126 * 299.99690 * 9 7 6 31 31 H 0.97005 * 119.99785 * 180.02562 * 13 12 10 32 32 H 1.08002 * 119.98614 * 0.03902 * 19 18 2 33 33 H 1.08001 * 119.97063 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.98907 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.01627 * 180.27269 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7271 -1.6927 1.1196 6 8 1.7081 -0.2517 2.4497 7 6 2.2268 -0.9862 3.5897 8 1 2.3403 -2.0372 3.3238 9 6 3.5871 -0.4117 3.9903 10 6 1.2685 -0.8613 4.7460 11 1 0.3602 -0.2877 4.6350 12 6 1.5513 -1.4794 5.9456 13 7 2.6571 -2.1784 6.0806 14 14 0.3631 -1.3252 7.3787 15 1 -0.7973 -0.4923 6.9722 16 1 -0.1111 -2.6752 7.7761 17 1 1.0532 -0.6849 8.5271 18 6 2.0323 -0.7105 -1.2304 19 6 1.6990 -2.0339 -1.4492 20 6 2.1600 -2.6859 -2.5774 21 6 2.9556 -2.0154 -3.4881 22 6 3.2855 -0.6908 -3.2743 23 6 2.8282 -0.0379 -2.1418 24 9 3.1543 1.2559 -1.9293 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.4736 0.6392 4.2563 29 1 3.9768 -0.9634 4.8458 30 1 4.2803 -0.5021 3.1540 31 1 2.8559 -2.6135 6.9244 32 1 1.0778 -2.5586 -0.7384 33 1 1.8993 -3.7201 -2.7473 34 1 3.3155 -2.5260 -4.3690 35 1 3.9032 -0.1659 -3.9880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:05 Heat of formation + Delta-G solvation = -135.568689 kcal Electronic energy + Delta-G solvation = -20040.661686 eV Core-core repulsion = 16724.211818 eV Total energy + Delta-G solvation = -3316.449868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.97112 -41.62668 -39.90193 -37.63911 -35.56175 -35.18963 -31.75903 -31.48112 -30.39881 -27.49438 -26.20314 -24.38362 -23.60452 -22.55388 -20.99773 -18.87904 -18.74476 -18.38873 -17.62748 -17.28544 -16.75430 -16.65823 -16.60381 -16.04941 -15.15805 -14.93027 -14.79612 -14.50051 -14.13837 -13.91681 -13.69288 -13.32368 -13.17705 -13.07732 -12.94726 -12.91284 -12.82815 -12.41948 -12.20934 -12.14549 -11.91611 -11.61744 -11.25609 -10.99697 -10.61917 -9.93430 -9.66158 -8.30152 -6.47198 0.11940 0.25685 1.27306 1.41648 1.42566 1.56419 1.96072 2.39374 2.69456 3.00730 3.24097 3.32449 3.68563 3.91369 4.05171 4.06806 4.17764 4.38055 4.41083 4.49013 4.72736 4.74389 4.79114 4.81426 4.91195 5.06719 5.09619 5.16242 5.21440 5.38274 5.46632 5.47019 5.59250 5.88451 5.93289 6.05618 6.58126 6.92507 7.24793 8.77974 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.004481 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.911788 B = 6247.024422 C = 6291.210217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.042 4.042 3 H 0.120 0.880 4 C 0.452 3.548 5 O -0.542 6.542 6 O -0.359 6.359 7 C 0.217 3.783 8 H 0.008 0.992 9 C -0.143 4.143 10 C -0.547 4.547 11 H 0.069 0.931 12 C 0.016 3.984 13 N -0.918 5.918 14 Si 0.984 3.016 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.123 4.123 19 C -0.076 4.076 20 C -0.130 4.130 21 C -0.082 4.082 22 C -0.155 4.155 23 C 0.084 3.916 24 F -0.146 7.146 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.019 0.981 31 H 0.271 0.729 32 H 0.119 0.881 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 2.370 -18.317 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.061 4.061 3 H 0.138 0.862 4 C 0.296 3.704 5 O -0.433 6.433 6 O -0.275 6.275 7 C 0.164 3.836 8 H 0.026 0.974 9 C -0.201 4.201 10 C -0.584 4.584 11 H 0.087 0.913 12 C -0.183 4.183 13 N -0.556 5.556 14 Si 0.807 3.193 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.197 1.197 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.148 4.148 21 C -0.100 4.100 22 C -0.174 4.174 23 C 0.065 3.935 24 F -0.125 7.125 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.355 2.028 -18.156 18.420 hybrid contribution 0.063 0.049 1.214 1.217 sum -2.293 2.077 -16.942 17.222 Atomic orbital electron populations 1.21763 0.88958 1.03576 1.04584 1.19928 1.00226 1.00030 0.85876 0.86187 1.24149 0.77149 0.82759 0.86334 1.90580 1.37228 1.27629 1.87854 1.86473 1.69355 1.56292 1.15418 1.20356 0.92882 0.90150 0.80178 0.97405 1.21995 0.96593 1.00635 1.00846 1.21319 1.06826 1.34129 0.96128 0.91301 1.25848 0.97548 0.93722 1.01220 1.70030 1.25597 1.32921 1.27047 0.85115 0.78373 0.78285 0.77515 1.18607 1.20027 1.19738 1.19453 1.01341 0.96137 0.95466 1.20979 0.98581 0.92476 0.97394 1.21540 0.98129 1.01529 0.93608 1.21457 0.95623 0.92924 0.99948 1.21437 1.02644 0.96607 0.96690 1.17775 0.99391 0.79074 0.97252 1.91452 1.91166 1.34862 1.95022 0.88398 0.91923 0.90841 0.93562 0.89939 0.96154 0.91979 0.86341 0.82802 0.81214 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.94 71.98 0.64 -2.81 16 2 C -0.04 -1.34 2.99 -12.29 -0.04 -1.38 16 3 H 0.12 3.66 7.13 -2.39 -0.02 3.64 16 4 C 0.45 19.79 7.10 71.24 0.51 20.30 16 5 O -0.54 -26.73 14.33 21.96 0.31 -26.41 16 6 O -0.36 -17.78 9.77 -51.45 -0.50 -18.28 16 7 C 0.22 12.22 2.56 29.85 0.08 12.30 16 8 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 9 C -0.14 -7.62 9.33 71.98 0.67 -6.95 16 10 C -0.55 -31.31 8.90 25.60 0.23 -31.08 16 11 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 12 C 0.02 0.90 5.30 84.65 0.45 1.35 16 13 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 14 Si 0.98 42.94 29.54 68.60 2.03 44.96 16 15 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 C -0.12 -3.66 4.40 -19.82 -0.09 -3.75 16 19 C -0.08 -2.11 7.93 22.26 0.18 -1.93 16 20 C -0.13 -2.70 10.04 22.27 0.22 -2.47 16 21 C -0.08 -1.41 10.04 22.26 0.22 -1.18 16 22 C -0.16 -3.15 10.03 22.31 0.22 -2.93 16 23 C 0.08 2.27 7.25 22.38 0.16 2.44 16 24 F -0.15 -4.13 16.19 44.97 0.73 -3.40 16 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.63 7.39 -2.39 -0.02 1.61 16 27 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 28 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 29 H 0.08 4.67 6.07 -2.39 -0.01 4.66 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 32 H 0.12 3.47 7.52 -2.91 -0.02 3.45 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -68.57 305.37 7.36 -61.21 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.09 Total: 12.91 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.46 Total: -18.11 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.24 Total: -52.89 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.19 Total: -44.69 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.73 Total: -3.40 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -68.57 7.36 -61.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.361 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds