Wall clock time and date at job start Mon Mar 30 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47314 * 2 1 4 4 C 1.50699 * 109.46807 * 239.99694 * 2 1 3 5 5 H 1.07998 * 119.99940 * 239.99626 * 4 2 1 6 6 C 1.37879 * 120.00143 * 60.00581 * 4 2 1 7 7 N 1.31518 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47032 * 89.99594 * 8 6 4 10 10 H 1.48491 * 109.47091 * 209.99540 * 8 6 4 11 11 H 1.48502 * 109.46683 * 329.99655 * 8 6 4 12 12 O 1.45199 * 109.47368 * 120.00041 * 2 1 3 13 13 C 1.34234 * 116.99811 * 269.99854 * 12 2 1 14 14 O 1.20827 * 120.00066 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00021 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.46719 * 60.00276 * 15 13 12 17 17 C 1.53002 * 109.47238 * 300.00121 * 15 13 12 18 18 C 1.50697 * 109.47052 * 180.02562 * 15 13 12 19 19 C 1.38216 * 120.01502 * 59.98079 * 18 15 13 20 20 C 1.38226 * 120.02514 * 180.02562 * 19 18 15 21 21 C 1.38265 * 120.05353 * 0.02562 * 20 19 18 22 22 C 1.38177 * 120.02212 * 359.70277 * 21 20 19 23 23 C 1.38436 * 120.00925 * 239.99834 * 18 15 13 24 24 F 1.35104 * 120.02854 * 359.95937 * 23 18 15 25 25 H 1.08998 * 109.47337 * 59.99907 * 1 2 3 26 26 H 1.08994 * 109.47616 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47112 * 300.00475 * 1 2 3 28 28 H 0.96995 * 120.00409 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47028 * 60.00021 * 17 15 13 30 30 H 1.08995 * 109.47383 * 179.97438 * 17 15 13 31 31 H 1.09003 * 109.46935 * 300.00017 * 17 15 13 32 32 H 1.08002 * 119.98614 * 0.03902 * 19 18 15 33 33 H 1.08001 * 119.97063 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.98907 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.01627 * 180.27269 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3223 -1.1197 -4.0080 9 1 1.3446 -2.1617 -4.4123 10 1 2.4871 -0.1404 -5.1120 11 1 3.6307 -1.7567 -3.7119 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0641 2.2811 14 8 1.9983 1.2520 2.2503 15 6 2.7184 -0.5771 3.5495 16 1 3.6873 -1.0407 3.3639 17 6 1.7225 -1.6435 4.0099 18 6 2.8603 0.4730 4.6210 19 6 1.7571 1.1997 5.0274 20 6 1.8872 2.1633 6.0098 21 6 3.1209 2.4017 6.5868 22 6 4.2240 1.6726 6.1861 23 6 4.0959 0.7103 5.1984 24 9 5.1749 0.0003 4.8024 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7082 1.1609 -3.4844 29 1 1.6194 -2.4031 3.2350 30 1 2.0851 -2.1075 4.9270 31 1 0.7536 -1.1798 4.1954 32 1 0.7930 1.0144 4.5772 33 1 1.0246 2.7309 6.3264 34 1 3.2214 3.1551 7.3540 35 1 5.1867 1.8558 6.6400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:07 Heat of formation + Delta-G solvation = -119.205243 kcal Electronic energy + Delta-G solvation = -20042.020759 eV Core-core repulsion = 16726.280464 eV Total energy + Delta-G solvation = -3315.740296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.89886 -40.03788 -38.69519 -35.81408 -34.19486 -33.21510 -30.56355 -29.82744 -29.18832 -25.33072 -24.92189 -23.04333 -22.49145 -20.93606 -19.31770 -17.68142 -17.09630 -16.71272 -16.14307 -15.88648 -15.55983 -15.16259 -14.95319 -14.48569 -14.11436 -13.79927 -13.18705 -13.04054 -12.77693 -12.26710 -12.24140 -12.12164 -11.93520 -11.65138 -11.29636 -11.07779 -11.02582 -10.91033 -10.82130 -10.39122 -10.27826 -9.58803 -9.50678 -8.96450 -8.90754 -8.66676 -8.49243 -6.18508 -4.25376 1.11157 1.21345 2.98069 3.24885 3.29902 3.33405 3.44206 3.81590 4.24291 4.34350 4.46726 4.71643 4.90172 5.13720 5.15394 5.21545 5.27158 5.36358 5.53660 5.83937 5.86471 5.91142 6.02514 6.07869 6.22711 6.34917 6.41174 6.62855 6.85209 6.87747 6.90761 7.16397 7.59712 7.72148 7.93262 8.13826 8.63309 8.88455 9.40150 10.88956 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.004592 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.241428 B = 6095.972420 C = 6327.530526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.353 6.353 13 C 0.458 3.542 14 O -0.514 6.514 15 C -0.051 4.051 16 H 0.114 0.886 17 C -0.136 4.136 18 C -0.100 4.100 19 C -0.056 4.056 20 C -0.132 4.132 21 C -0.093 4.093 22 C -0.159 4.159 23 C 0.105 3.895 24 F -0.138 7.138 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 -0.608 17.296 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.300 3.700 14 O -0.403 6.403 15 C -0.071 4.071 16 H 0.132 0.868 17 C -0.194 4.194 18 C -0.101 4.101 19 C -0.074 4.074 20 C -0.150 4.150 21 C -0.111 4.111 22 C -0.177 4.177 23 C 0.086 3.914 24 F -0.117 7.117 25 H 0.117 0.883 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.123 -0.170 17.058 17.190 hybrid contribution 0.468 -0.282 -1.028 1.164 sum 2.592 -0.452 16.030 16.244 Atomic orbital electron populations 1.22151 0.97534 1.00074 1.01359 1.20646 0.91384 0.93934 0.77788 0.93614 1.21032 1.32486 1.13465 0.88894 0.91298 1.24888 0.94937 0.95072 0.99064 1.69897 1.36120 1.22558 1.24169 0.86272 0.79329 0.79131 0.81407 1.20339 1.20966 1.19604 1.86476 1.75692 1.43524 1.21178 1.23021 0.75090 0.85942 0.85952 1.90610 1.48411 1.16700 1.84616 1.19857 1.02857 0.95180 0.89167 0.86808 1.21744 0.97843 0.97587 1.02196 1.19457 0.92632 0.99635 0.98359 1.20891 0.98245 0.93669 0.94575 1.21175 0.97901 0.98560 0.97353 1.20978 0.92063 0.98599 0.99470 1.21047 1.00556 0.97423 0.98722 1.17512 0.82792 0.93833 0.97239 1.91482 1.53444 1.76850 1.89886 0.88257 0.94424 0.96595 0.92406 0.90225 0.91431 0.91944 0.85126 0.85339 0.85200 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.33 37.16 0.35 -3.54 16 2 C 0.21 5.82 2.56 -27.89 -0.07 5.75 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.75 8.90 -34.44 -0.31 -15.06 16 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 O -0.35 -8.45 9.77 -39.27 -0.38 -8.83 16 13 C 0.46 9.70 7.10 36.01 0.26 9.96 16 14 O -0.51 -12.16 14.33 -18.75 -0.27 -12.43 16 15 C -0.05 -0.82 2.99 -92.92 -0.28 -1.10 16 16 H 0.11 1.75 7.13 -51.93 -0.37 1.38 16 17 C -0.14 -1.77 8.94 37.16 0.33 -1.44 16 18 C -0.10 -1.50 4.40 -104.56 -0.46 -1.96 16 19 C -0.06 -0.77 7.93 -39.59 -0.31 -1.09 16 20 C -0.13 -1.50 10.04 -39.58 -0.40 -1.90 16 21 C -0.09 -0.96 10.04 -39.59 -0.40 -1.36 16 22 C -0.16 -1.84 10.03 -39.51 -0.40 -2.24 16 23 C 0.11 1.50 7.25 -39.42 -0.29 1.21 16 24 F -0.14 -2.03 16.20 2.25 0.04 -2.00 16 25 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.78 7.39 -51.93 -0.38 0.39 16 32 H 0.13 1.81 7.52 -52.49 -0.39 1.41 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -31.17 305.36 -6.81 -37.98 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.34 Total: 0.40 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.07 Total: -11.13 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.63 Total: -24.79 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.65 Total: -21.26 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.17 -6.81 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.226 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds