Wall clock time and date at job start Mon Mar 30 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47314 * 2 1 4 4 C 1.50699 * 109.46807 * 239.99694 * 2 1 3 5 5 H 1.07998 * 119.99940 * 239.99626 * 4 2 1 6 6 C 1.37879 * 120.00143 * 60.00581 * 4 2 1 7 7 N 1.31518 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47032 * 89.99594 * 8 6 4 10 10 H 1.48491 * 109.47091 * 209.99540 * 8 6 4 11 11 H 1.48502 * 109.46683 * 329.99655 * 8 6 4 12 12 O 1.45199 * 109.47368 * 120.00041 * 2 1 3 13 13 C 1.34234 * 116.99811 * 269.99854 * 12 2 1 14 14 O 1.20827 * 120.00066 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00021 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.46719 * 60.00276 * 15 13 12 17 17 C 1.53002 * 109.47238 * 300.00121 * 15 13 12 18 18 C 1.50697 * 109.47052 * 180.02562 * 15 13 12 19 19 C 1.38216 * 120.01502 * 59.98079 * 18 15 13 20 20 C 1.38226 * 120.02514 * 180.02562 * 19 18 15 21 21 C 1.38265 * 120.05353 * 0.02562 * 20 19 18 22 22 C 1.38177 * 120.02212 * 359.70277 * 21 20 19 23 23 C 1.38436 * 120.00925 * 239.99834 * 18 15 13 24 24 F 1.35104 * 120.02854 * 359.95937 * 23 18 15 25 25 H 1.08998 * 109.47337 * 59.99907 * 1 2 3 26 26 H 1.08994 * 109.47616 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47112 * 300.00475 * 1 2 3 28 28 H 0.96995 * 120.00409 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47028 * 60.00021 * 17 15 13 30 30 H 1.08995 * 109.47383 * 179.97438 * 17 15 13 31 31 H 1.09003 * 109.46935 * 300.00017 * 17 15 13 32 32 H 1.08002 * 119.98614 * 0.03902 * 19 18 15 33 33 H 1.08001 * 119.97063 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.98907 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.01627 * 180.27269 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3223 -1.1197 -4.0080 9 1 1.3446 -2.1617 -4.4123 10 1 2.4871 -0.1404 -5.1120 11 1 3.6307 -1.7567 -3.7119 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0641 2.2811 14 8 1.9983 1.2520 2.2503 15 6 2.7184 -0.5771 3.5495 16 1 3.6873 -1.0407 3.3639 17 6 1.7225 -1.6435 4.0099 18 6 2.8603 0.4730 4.6210 19 6 1.7571 1.1997 5.0274 20 6 1.8872 2.1633 6.0098 21 6 3.1209 2.4017 6.5868 22 6 4.2240 1.6726 6.1861 23 6 4.0959 0.7103 5.1984 24 9 5.1749 0.0003 4.8024 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7082 1.1609 -3.4844 29 1 1.6194 -2.4031 3.2350 30 1 2.0851 -2.1075 4.9270 31 1 0.7536 -1.1798 4.1954 32 1 0.7930 1.0144 4.5772 33 1 1.0246 2.7309 6.3264 34 1 3.2214 3.1551 7.3540 35 1 5.1867 1.8558 6.6400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113695437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:07 Heat of formation + Delta-G solvation = -135.614270 kcal Electronic energy + Delta-G solvation = -20042.732308 eV Core-core repulsion = 16726.280464 eV Total energy + Delta-G solvation = -3316.451844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.97327 -41.62600 -39.89929 -37.63576 -35.55939 -35.19219 -31.75435 -31.47662 -30.40572 -27.47821 -26.18346 -24.39943 -23.59602 -22.56989 -20.96465 -18.86935 -18.79635 -18.39629 -17.57672 -17.24707 -16.78228 -16.70214 -16.59046 -16.06753 -15.16993 -14.91243 -14.85126 -14.28670 -14.15931 -14.07439 -13.65085 -13.26203 -13.22042 -13.08148 -12.94365 -12.89728 -12.80303 -12.42231 -12.20176 -12.18016 -11.93555 -11.58359 -11.24790 -11.01641 -10.61268 -9.93236 -9.66063 -8.30644 -6.47763 0.12062 0.25851 1.27566 1.40709 1.42893 1.54046 1.96056 2.38841 2.69662 2.99952 3.24505 3.32686 3.68330 3.91508 4.05740 4.07385 4.18099 4.38320 4.41100 4.50643 4.74291 4.76573 4.78400 4.82783 4.91660 5.06755 5.10645 5.17113 5.21642 5.38250 5.46520 5.46840 5.60954 5.89335 5.93469 6.05830 6.57126 6.92557 7.24220 8.77085 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.004592 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.241428 B = 6095.972420 C = 6327.530526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.983 3.017 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.267 1.267 12 O -0.359 6.359 13 C 0.452 3.548 14 O -0.542 6.542 15 C -0.042 4.042 16 H 0.117 0.883 17 C -0.131 4.131 18 C -0.123 4.123 19 C -0.075 4.075 20 C -0.130 4.130 21 C -0.082 4.082 22 C -0.156 4.156 23 C 0.082 3.918 24 F -0.147 7.147 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.271 0.729 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 -0.775 18.625 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.164 3.836 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.806 3.194 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.191 1.191 12 O -0.276 6.276 13 C 0.296 3.704 14 O -0.433 6.433 15 C -0.061 4.061 16 H 0.135 0.865 17 C -0.188 4.188 18 C -0.124 4.124 19 C -0.093 4.093 20 C -0.148 4.148 21 C -0.100 4.100 22 C -0.175 4.175 23 C 0.063 3.937 24 F -0.126 7.126 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.508 -0.343 18.413 18.586 hybrid contribution 0.354 -0.123 -1.332 1.383 sum 2.863 -0.466 17.081 17.326 Atomic orbital electron populations 1.21957 0.96448 1.00468 1.00848 1.20359 0.92222 0.91921 0.79123 0.97764 1.21301 1.33524 1.13928 0.90018 0.91548 1.25830 0.94677 0.95630 1.02117 1.70014 1.36558 1.23611 1.25257 0.85181 0.79012 0.78158 0.77059 1.18992 1.20217 1.19096 1.86471 1.76107 1.43641 1.21335 1.24139 0.74016 0.85784 0.86429 1.90580 1.49619 1.18069 1.85016 1.19930 1.03319 0.96164 0.86733 0.86507 1.21764 0.97331 0.96500 1.03198 1.19464 0.93689 1.00440 0.98827 1.20985 0.97616 0.94871 0.95847 1.21549 0.99552 0.97524 0.96138 1.21459 0.90913 0.98334 0.99286 1.21434 1.02276 0.96174 0.97568 1.17810 0.82266 0.95003 0.98598 1.91452 1.53724 1.77256 1.90184 0.90112 0.93416 0.95640 0.91947 0.90761 0.88488 0.91625 0.86061 0.82672 0.81230 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.25 9.33 71.98 0.67 -6.58 16 2 C 0.22 12.19 2.56 29.85 0.08 12.27 16 3 H 0.00 0.29 7.16 -2.39 -0.02 0.27 16 4 C -0.55 -31.85 8.90 25.60 0.23 -31.63 16 5 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.92 16 8 Si 0.98 43.34 29.54 68.60 2.03 45.37 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 12 O -0.36 -17.79 9.77 -51.45 -0.50 -18.29 16 13 C 0.45 19.80 7.10 71.24 0.51 20.30 16 14 O -0.54 -26.69 14.33 21.96 0.31 -26.38 16 15 C -0.04 -1.37 2.99 -12.29 -0.04 -1.41 16 16 H 0.12 3.66 7.13 -2.39 -0.02 3.65 16 17 C -0.13 -3.32 8.94 71.98 0.64 -2.67 16 18 C -0.12 -3.67 4.40 -19.82 -0.09 -3.76 16 19 C -0.08 -2.03 7.93 22.26 0.18 -1.86 16 20 C -0.13 -2.64 10.04 22.27 0.22 -2.41 16 21 C -0.08 -1.42 10.04 22.26 0.22 -1.19 16 22 C -0.16 -3.22 10.03 22.31 0.22 -3.00 16 23 C 0.08 2.26 7.25 22.38 0.16 2.42 16 24 F -0.15 -4.29 16.20 44.97 0.73 -3.57 16 25 H 0.08 4.50 6.07 -2.39 -0.01 4.48 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.61 7.39 -2.39 -0.02 1.59 16 32 H 0.12 3.40 7.52 -2.91 -0.02 3.38 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -69.09 305.36 7.36 -61.73 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.09 Total: 12.16 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.46 Total: -18.10 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.24 Total: -52.92 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.19 Total: -44.67 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.73 Total: -3.57 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -69.09 7.36 -61.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.883 kcal (2) G-P(sol) polarization free energy of solvation -69.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds