Wall clock time and date at job start Mon Mar 30 2020 07:14:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 S 1.81405 * 109.46790 * 2 1
4 4 C 1.81401 * 102.99588 * 179.97438 * 3 2 1
5 5 C 1.53007 * 109.46911 * 179.97438 * 4 3 2
6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 3
7 7 O 1.42901 * 109.47107 * 180.02562 * 6 5 4
8 8 C 1.35674 * 117.00062 * 180.02562 * 7 6 5
9 9 C 1.39314 * 119.81783 * 0.24781 * 8 7 6
10 10 C 1.36432 * 120.18227 * 180.26300 * 9 8 7
11 11 C 1.40835 * 119.81560 * 359.47198 * 10 9 8
12 12 C 1.41214 * 120.18162 * 180.30293 * 11 10 9
13 13 H 1.08001 * 119.99977 * 24.53823 * 12 11 10
14 14 C 1.39897 * 119.99713 * 204.53932 * 12 11 10
15 15 N 1.30875 * 120.00270 * 17.91647 * 14 12 11
16 16 Si 1.86801 * 119.99742 * 197.92014 * 14 12 11
17 17 H 1.48492 * 109.47277 * 59.99635 * 16 14 12
18 18 H 1.48504 * 109.46921 * 180.02562 * 16 14 12
19 19 H 1.48508 * 109.46900 * 299.99907 * 16 14 12
20 20 C 1.40833 * 119.64086 * 0.27678 * 11 10 9
21 21 C 1.36441 * 119.81171 * 0.02562 * 20 11 10
22 22 H 1.08990 * 109.47727 * 299.99787 * 1 2 3
23 23 H 1.08999 * 109.47100 * 60.00238 * 1 2 3
24 24 H 1.09003 * 109.47001 * 179.97438 * 1 2 3
25 25 H 1.09003 * 109.47237 * 239.99886 * 2 1 3
26 26 H 1.08999 * 109.47100 * 119.99761 * 2 1 3
27 27 H 1.09004 * 109.47068 * 60.00483 * 4 3 2
28 28 H 1.08995 * 109.47763 * 299.99732 * 4 3 2
29 29 H 1.09004 * 109.46760 * 60.00417 * 5 4 3
30 30 H 1.08996 * 109.47250 * 300.00194 * 5 4 3
31 31 H 1.09004 * 109.46943 * 60.00576 * 6 5 4
32 32 H 1.08996 * 109.47273 * 300.00226 * 6 5 4
33 33 H 1.07997 * 119.90843 * 0.02879 * 9 8 7
34 34 H 1.08000 * 120.09762 * 179.74428 * 10 9 8
35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12
36 36 H 1.07993 * 120.09911 * 180.02562 * 20 11 10
37 37 H 1.07992 * 119.91021 * 179.97438 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1346 1.7103 0.0000
4 6 3.9370 1.5059 0.0008
5 6 4.6064 2.8818 0.0002
6 6 6.1266 2.7094 0.0015
7 8 6.7517 3.9944 0.0016
8 6 8.1082 4.0195 0.0022
9 6 8.8232 2.8238 -0.0026
10 6 10.1874 2.8403 0.0034
11 6 10.8728 4.0706 0.0031
12 6 12.2847 4.0967 0.0028
13 1 12.8402 3.2560 -0.3857
14 6 12.9637 5.2117 0.5057
15 7 12.3413 6.0616 1.2822
16 14 14.7589 5.4873 0.0687
17 1 14.8954 5.6183 -1.4041
18 1 15.2427 6.7292 0.7237
19 1 15.5658 4.3331 0.5399
20 6 10.1425 5.2748 0.0026
21 6 8.7785 5.2409 0.0029
22 1 -0.3634 0.5137 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8934 -0.5139 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 4.2405 0.9543 -0.8891
28 1 4.2399 0.9546 0.8909
29 1 4.3029 3.4337 0.8899
30 1 4.3036 3.4328 -0.8901
31 1 6.4304 2.1572 -0.8879
32 1 6.4290 2.1585 0.8921
33 1 8.2961 1.8812 -0.0072
34 1 10.7402 1.9125 0.0039
35 1 12.8122 6.8345 1.6312
36 1 10.6605 6.2224 0.0019
37 1 8.2169 6.1633 0.0029
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000135273332.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:14:49
Heat of formation + Delta-G solvation = -41.745536 kcal
Electronic energy + Delta-G solvation = -16713.391705 eV
Core-core repulsion = 13967.223491 eV
Total energy + Delta-G solvation = -2746.168215 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.108 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-38.83738 -36.56443 -34.02201 -33.12823 -33.09934 -29.78034 -29.02502 -26.74453
-24.67324 -23.87687 -22.01564 -20.64258 -20.41310 -17.31932 -17.10039 -16.28579
-16.04996 -15.28156 -15.13131 -15.10528 -14.20080 -14.04129 -13.93744 -13.33366
-12.89356 -12.61310 -12.40430 -12.17265 -12.07536 -11.85634 -11.69724 -11.56401
-11.20816 -11.05575 -10.90041 -10.70838 -10.55149 -10.16748 -9.93058 -9.81913
-9.33693 -9.01564 -7.90485 -7.63886 -7.02881 -6.71913 -4.25283 1.37232
2.35293 2.79333 2.95685 3.08113 3.10530 3.22723 3.95036 4.02882
4.56980 4.61866 4.62162 4.72510 4.99808 5.04090 5.17850 5.33665
5.35277 5.43307 5.52211 5.61461 5.67228 5.71773 6.04646 6.07717
6.08882 6.25051 6.73646 6.98458 7.11666 7.19039 7.47225 7.56097
7.79946 8.00608 8.20852 8.45682 8.65587 8.90152 8.99183 10.22487
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.079536 B = 0.002634 C = 0.002574
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 351.956043 B =10628.516294 C =10876.897051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.091 4.091
3 S -0.262 6.262
4 C -0.080 4.080
5 C -0.102 4.102
6 C 0.075 3.925
7 O -0.328 6.328
8 C -0.008 4.008
9 C -0.167 4.167
10 C -0.199 4.199
11 C 0.088 3.912
12 C -0.464 4.464
13 H 0.076 0.924
14 C 0.075 3.925
15 N -0.799 5.799
16 Si 0.908 3.092
17 H -0.264 1.264
18 H -0.279 1.279
19 H -0.266 1.266
20 C -0.134 4.134
21 C -0.120 4.120
22 H 0.064 0.936
23 H 0.064 0.936
24 H 0.070 0.930
25 H 0.080 0.920
26 H 0.080 0.920
27 H 0.083 0.917
28 H 0.083 0.917
29 H 0.080 0.920
30 H 0.080 0.920
31 H 0.051 0.949
32 H 0.051 0.949
33 H 0.093 0.907
34 H 0.094 0.906
35 H 0.281 0.719
36 H 0.126 0.874
37 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.190 -8.510 -1.771 17.501
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.240 4.240
3 S -0.036 6.036
4 C -0.228 4.228
5 C -0.141 4.141
6 C -0.003 4.003
7 O -0.244 6.244
8 C -0.051 4.051
9 C -0.186 4.186
10 C -0.219 4.219
11 C 0.086 3.914
12 C -0.494 4.494
13 H 0.094 0.906
14 C -0.142 4.142
15 N -0.425 5.425
16 Si 0.733 3.267
17 H -0.189 1.189
18 H -0.204 1.204
19 H -0.191 1.191
20 C -0.153 4.153
21 C -0.139 4.139
22 H 0.084 0.916
23 H 0.083 0.917
24 H 0.088 0.912
25 H 0.099 0.901
26 H 0.099 0.901
27 H 0.102 0.898
28 H 0.102 0.898
29 H 0.099 0.901
30 H 0.099 0.901
31 H 0.069 0.931
32 H 0.069 0.931
33 H 0.111 0.889
34 H 0.112 0.888
35 H 0.091 0.909
36 H 0.144 0.856
37 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -15.876 -7.221 -1.622 17.517
hybrid contribution 1.679 -1.303 -0.044 2.126
sum -14.197 -8.524 -1.666 16.643
Atomic orbital electron populations
1.21507 0.92230 1.02469 1.03262 1.23305 1.00219 0.95558 1.04889
1.86984 1.05857 1.12622 1.98132 1.23235 0.92942 1.01428 1.05235
1.21187 0.93507 0.94768 1.04625 1.22328 0.91222 0.86173 1.00622
1.85799 1.18816 1.28447 1.91319 1.18587 0.79991 0.94362 1.12202
1.20404 0.95341 0.94890 1.07947 1.20565 0.92664 0.97209 1.11431
1.17596 0.93528 0.90617 0.89699 1.19427 0.91405 1.02094 1.36459
0.90593 1.25883 1.00666 0.95049 0.92626 1.69822 1.38739 1.11295
1.22607 0.86377 0.82090 0.78366 0.79909 1.18883 1.20390 1.19116
1.20981 0.91258 0.99313 1.03770 1.19847 0.94390 0.93938 1.05692
0.91646 0.91659 0.91161 0.90130 0.90123 0.89806 0.89787 0.90129
0.90143 0.93091 0.93073 0.88860 0.88753 0.90852 0.85648 0.88439
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.88 9.92 37.16 0.37 -0.51 16
2 C -0.09 -0.70 6.66 37.16 0.25 -0.46 16
3 S -0.26 -2.80 21.74 -107.50 -2.34 -5.14 16
4 C -0.08 -0.84 5.94 37.16 0.22 -0.62 16
5 C -0.10 -1.31 5.59 -26.73 -0.15 -1.46 16
6 C 0.07 1.17 4.73 37.16 0.18 1.35 16
7 O -0.33 -6.78 10.12 -18.72 -0.19 -6.97 16
8 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16
9 C -0.17 -3.81 8.96 -39.83 -0.36 -4.17 16
10 C -0.20 -4.93 9.74 -39.25 -0.38 -5.31 16
11 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16
12 C -0.46 -12.36 9.04 -37.83 -0.34 -12.71 16
13 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16
14 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16
15 N -0.80 -20.78 10.96 55.55 0.61 -20.17 16
16 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16
17 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16
18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16
19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16
20 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16
21 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16
22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
25 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16
26 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16
27 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16
28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
31 H 0.05 0.77 7.63 -51.93 -0.40 0.37 16
32 H 0.05 0.78 7.66 -51.93 -0.40 0.39 16
33 H 0.09 1.83 6.27 -52.49 -0.33 1.50 16
34 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16
35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16
36 H 0.13 3.37 6.16 -52.49 -0.32 3.04 16
37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16
LS Contribution 323.63 15.07 4.88 4.88
Total: -1.00 -28.32 323.63 -9.61 -37.94
By element:
Atomic # 1 Polarization: 9.37 SS G_CDS: -5.65 Total: 3.73 kcal
Atomic # 6 Polarization: -26.07 SS G_CDS: -1.90 Total: -27.97 kcal
Atomic # 7 Polarization: -20.78 SS G_CDS: 0.61 Total: -20.17 kcal
Atomic # 8 Polarization: -6.78 SS G_CDS: -0.19 Total: -6.97 kcal
Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal
Atomic # 16 Polarization: -2.80 SS G_CDS: -2.34 Total: -5.14 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -28.32 -9.61 -37.94 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000135273332.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.810 kcal
(2) G-P(sol) polarization free energy of solvation -28.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds