Wall clock time and date at job start Mon Mar 30 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81405 * 109.46790 * 2 1 4 4 C 1.81401 * 102.99588 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46911 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.47107 * 180.02562 * 6 5 4 8 8 C 1.35674 * 117.00062 * 180.02562 * 7 6 5 9 9 C 1.39314 * 119.81783 * 0.24781 * 8 7 6 10 10 C 1.36432 * 120.18227 * 180.26300 * 9 8 7 11 11 C 1.40835 * 119.81560 * 359.47198 * 10 9 8 12 12 C 1.41214 * 120.18162 * 180.30293 * 11 10 9 13 13 H 1.08001 * 119.99977 * 24.53823 * 12 11 10 14 14 C 1.39897 * 119.99713 * 204.53932 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.91647 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.92014 * 14 12 11 17 17 H 1.48492 * 109.47277 * 59.99635 * 16 14 12 18 18 H 1.48504 * 109.46921 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46900 * 299.99907 * 16 14 12 20 20 C 1.40833 * 119.64086 * 0.27678 * 11 10 9 21 21 C 1.36441 * 119.81171 * 0.02562 * 20 11 10 22 22 H 1.08990 * 109.47727 * 299.99787 * 1 2 3 23 23 H 1.08999 * 109.47100 * 60.00238 * 1 2 3 24 24 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47237 * 239.99886 * 2 1 3 26 26 H 1.08999 * 109.47100 * 119.99761 * 2 1 3 27 27 H 1.09004 * 109.47068 * 60.00483 * 4 3 2 28 28 H 1.08995 * 109.47763 * 299.99732 * 4 3 2 29 29 H 1.09004 * 109.46760 * 60.00417 * 5 4 3 30 30 H 1.08996 * 109.47250 * 300.00194 * 5 4 3 31 31 H 1.09004 * 109.46943 * 60.00576 * 6 5 4 32 32 H 1.08996 * 109.47273 * 300.00226 * 6 5 4 33 33 H 1.07997 * 119.90843 * 0.02879 * 9 8 7 34 34 H 1.08000 * 120.09762 * 179.74428 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.09911 * 180.02562 * 20 11 10 37 37 H 1.07992 * 119.91021 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 0.0008 5 6 4.6064 2.8818 0.0002 6 6 6.1266 2.7094 0.0015 7 8 6.7517 3.9944 0.0016 8 6 8.1082 4.0195 0.0022 9 6 8.8232 2.8238 -0.0026 10 6 10.1874 2.8403 0.0034 11 6 10.8728 4.0706 0.0031 12 6 12.2847 4.0967 0.0028 13 1 12.8402 3.2560 -0.3857 14 6 12.9637 5.2117 0.5057 15 7 12.3413 6.0616 1.2822 16 14 14.7589 5.4873 0.0687 17 1 14.8954 5.6183 -1.4041 18 1 15.2427 6.7292 0.7237 19 1 15.5658 4.3331 0.5399 20 6 10.1425 5.2748 0.0026 21 6 8.7785 5.2409 0.0029 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.2405 0.9543 -0.8891 28 1 4.2399 0.9546 0.8909 29 1 4.3029 3.4337 0.8899 30 1 4.3036 3.4328 -0.8901 31 1 6.4304 2.1572 -0.8879 32 1 6.4290 2.1585 0.8921 33 1 8.2961 1.8812 -0.0072 34 1 10.7402 1.9125 0.0039 35 1 12.8122 6.8345 1.6312 36 1 10.6605 6.2224 0.0019 37 1 8.2169 6.1633 0.0029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135273332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:49 Heat of formation + Delta-G solvation = -41.745536 kcal Electronic energy + Delta-G solvation = -16713.391705 eV Core-core repulsion = 13967.223491 eV Total energy + Delta-G solvation = -2746.168215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.83738 -36.56443 -34.02201 -33.12823 -33.09934 -29.78034 -29.02502 -26.74453 -24.67324 -23.87687 -22.01564 -20.64258 -20.41310 -17.31932 -17.10039 -16.28579 -16.04996 -15.28156 -15.13131 -15.10528 -14.20080 -14.04129 -13.93744 -13.33366 -12.89356 -12.61310 -12.40430 -12.17265 -12.07536 -11.85634 -11.69724 -11.56401 -11.20816 -11.05575 -10.90041 -10.70838 -10.55149 -10.16748 -9.93058 -9.81913 -9.33693 -9.01564 -7.90485 -7.63886 -7.02881 -6.71913 -4.25283 1.37232 2.35293 2.79333 2.95685 3.08113 3.10530 3.22723 3.95036 4.02882 4.56980 4.61866 4.62162 4.72510 4.99808 5.04090 5.17850 5.33665 5.35277 5.43307 5.52211 5.61461 5.67228 5.71773 6.04646 6.07717 6.08882 6.25051 6.73646 6.98458 7.11666 7.19039 7.47225 7.56097 7.79946 8.00608 8.20852 8.45682 8.65587 8.90152 8.99183 10.22487 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.079536 B = 0.002634 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.956043 B =10628.516294 C =10876.897051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 S -0.262 6.262 4 C -0.080 4.080 5 C -0.102 4.102 6 C 0.075 3.925 7 O -0.328 6.328 8 C -0.008 4.008 9 C -0.167 4.167 10 C -0.199 4.199 11 C 0.088 3.912 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.799 5.799 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.134 4.134 21 C -0.120 4.120 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.281 0.719 36 H 0.126 0.874 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.190 -8.510 -1.771 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.240 4.240 3 S -0.036 6.036 4 C -0.228 4.228 5 C -0.141 4.141 6 C -0.003 4.003 7 O -0.244 6.244 8 C -0.051 4.051 9 C -0.186 4.186 10 C -0.219 4.219 11 C 0.086 3.914 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.425 5.425 16 Si 0.733 3.267 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.153 4.153 21 C -0.139 4.139 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.876 -7.221 -1.622 17.517 hybrid contribution 1.679 -1.303 -0.044 2.126 sum -14.197 -8.524 -1.666 16.643 Atomic orbital electron populations 1.21507 0.92230 1.02469 1.03262 1.23305 1.00219 0.95558 1.04889 1.86984 1.05857 1.12622 1.98132 1.23235 0.92942 1.01428 1.05235 1.21187 0.93507 0.94768 1.04625 1.22328 0.91222 0.86173 1.00622 1.85799 1.18816 1.28447 1.91319 1.18587 0.79991 0.94362 1.12202 1.20404 0.95341 0.94890 1.07947 1.20565 0.92664 0.97209 1.11431 1.17596 0.93528 0.90617 0.89699 1.19427 0.91405 1.02094 1.36459 0.90593 1.25883 1.00666 0.95049 0.92626 1.69822 1.38739 1.11295 1.22607 0.86377 0.82090 0.78366 0.79909 1.18883 1.20390 1.19116 1.20981 0.91258 0.99313 1.03770 1.19847 0.94390 0.93938 1.05692 0.91646 0.91659 0.91161 0.90130 0.90123 0.89806 0.89787 0.90129 0.90143 0.93091 0.93073 0.88860 0.88753 0.90852 0.85648 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.92 37.16 0.37 -0.51 16 2 C -0.09 -0.70 6.66 37.16 0.25 -0.46 16 3 S -0.26 -2.80 21.74 -107.50 -2.34 -5.14 16 4 C -0.08 -0.84 5.94 37.16 0.22 -0.62 16 5 C -0.10 -1.31 5.59 -26.73 -0.15 -1.46 16 6 C 0.07 1.17 4.73 37.16 0.18 1.35 16 7 O -0.33 -6.78 10.12 -18.72 -0.19 -6.97 16 8 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 9 C -0.17 -3.81 8.96 -39.83 -0.36 -4.17 16 10 C -0.20 -4.93 9.74 -39.25 -0.38 -5.31 16 11 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 12 C -0.46 -12.36 9.04 -37.83 -0.34 -12.71 16 13 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 14 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 15 N -0.80 -20.78 10.96 55.55 0.61 -20.17 16 16 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 17 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 21 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.77 7.63 -51.93 -0.40 0.37 16 32 H 0.05 0.78 7.66 -51.93 -0.40 0.39 16 33 H 0.09 1.83 6.27 -52.49 -0.33 1.50 16 34 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.13 3.37 6.16 -52.49 -0.32 3.04 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -28.32 323.63 -9.61 -37.94 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.65 Total: 3.73 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -1.90 Total: -27.97 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.61 Total: -20.17 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.19 Total: -6.97 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.34 Total: -5.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.32 -9.61 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135273332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.810 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds