Wall clock time and date at job start Mon Mar 30 2020 07:14:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 S 1.81405 * 109.46790 * 2 1
4 4 C 1.81401 * 102.99588 * 179.97438 * 3 2 1
5 5 C 1.53007 * 109.46911 * 179.97438 * 4 3 2
6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 3
7 7 O 1.42901 * 109.47107 * 180.02562 * 6 5 4
8 8 C 1.35674 * 117.00062 * 180.02562 * 7 6 5
9 9 C 1.39314 * 119.81783 * 0.24781 * 8 7 6
10 10 C 1.36432 * 120.18227 * 180.26300 * 9 8 7
11 11 C 1.40835 * 119.81560 * 359.47198 * 10 9 8
12 12 C 1.41214 * 120.18162 * 180.30293 * 11 10 9
13 13 H 1.08001 * 119.99977 * 24.53823 * 12 11 10
14 14 C 1.39897 * 119.99713 * 204.53932 * 12 11 10
15 15 N 1.30875 * 120.00270 * 17.91647 * 14 12 11
16 16 Si 1.86801 * 119.99742 * 197.92014 * 14 12 11
17 17 H 1.48492 * 109.47277 * 59.99635 * 16 14 12
18 18 H 1.48504 * 109.46921 * 180.02562 * 16 14 12
19 19 H 1.48508 * 109.46900 * 299.99907 * 16 14 12
20 20 C 1.40833 * 119.64086 * 0.27678 * 11 10 9
21 21 C 1.36441 * 119.81171 * 0.02562 * 20 11 10
22 22 H 1.08990 * 109.47727 * 299.99787 * 1 2 3
23 23 H 1.08999 * 109.47100 * 60.00238 * 1 2 3
24 24 H 1.09003 * 109.47001 * 179.97438 * 1 2 3
25 25 H 1.09003 * 109.47237 * 239.99886 * 2 1 3
26 26 H 1.08999 * 109.47100 * 119.99761 * 2 1 3
27 27 H 1.09004 * 109.47068 * 60.00483 * 4 3 2
28 28 H 1.08995 * 109.47763 * 299.99732 * 4 3 2
29 29 H 1.09004 * 109.46760 * 60.00417 * 5 4 3
30 30 H 1.08996 * 109.47250 * 300.00194 * 5 4 3
31 31 H 1.09004 * 109.46943 * 60.00576 * 6 5 4
32 32 H 1.08996 * 109.47273 * 300.00226 * 6 5 4
33 33 H 1.07997 * 119.90843 * 0.02879 * 9 8 7
34 34 H 1.08000 * 120.09762 * 179.74428 * 10 9 8
35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12
36 36 H 1.07993 * 120.09911 * 180.02562 * 20 11 10
37 37 H 1.07992 * 119.91021 * 179.97438 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1346 1.7103 0.0000
4 6 3.9370 1.5059 0.0008
5 6 4.6064 2.8818 0.0002
6 6 6.1266 2.7094 0.0015
7 8 6.7517 3.9944 0.0016
8 6 8.1082 4.0195 0.0022
9 6 8.8232 2.8238 -0.0026
10 6 10.1874 2.8403 0.0034
11 6 10.8728 4.0706 0.0031
12 6 12.2847 4.0967 0.0028
13 1 12.8402 3.2560 -0.3857
14 6 12.9637 5.2117 0.5057
15 7 12.3413 6.0616 1.2822
16 14 14.7589 5.4873 0.0687
17 1 14.8954 5.6183 -1.4041
18 1 15.2427 6.7292 0.7237
19 1 15.5658 4.3331 0.5399
20 6 10.1425 5.2748 0.0026
21 6 8.7785 5.2409 0.0029
22 1 -0.3634 0.5137 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8934 -0.5139 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 4.2405 0.9543 -0.8891
28 1 4.2399 0.9546 0.8909
29 1 4.3029 3.4337 0.8899
30 1 4.3036 3.4328 -0.8901
31 1 6.4304 2.1572 -0.8879
32 1 6.4290 2.1585 0.8921
33 1 8.2961 1.8812 -0.0072
34 1 10.7402 1.9125 0.0039
35 1 12.8122 6.8345 1.6312
36 1 10.6605 6.2224 0.0019
37 1 8.2169 6.1633 0.0029
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000135273332.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:14:49
Heat of formation + Delta-G solvation = -54.839203 kcal
Electronic energy + Delta-G solvation = -16713.959489 eV
Core-core repulsion = 13967.223491 eV
Total energy + Delta-G solvation = -2746.735998 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.108 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.54939 -38.31393 -35.48052 -34.68717 -33.65363 -31.65844 -30.91046 -28.00211
-26.45495 -24.62165 -23.33842 -22.49242 -21.94083 -19.23148 -18.72942 -17.21844
-17.17738 -17.04257 -16.43305 -15.85338 -15.75046 -15.34403 -15.11222 -14.87140
-14.14395 -14.02734 -13.99777 -13.65421 -13.33544 -13.06406 -12.90050 -12.78069
-12.58993 -12.45948 -12.30194 -12.10641 -11.86702 -11.70296 -11.46075 -11.18512
-10.92149 -10.87141 -9.56538 -8.93333 -8.71982 -8.59629 -6.23070 0.61244
0.95043 1.02471 1.39995 1.50929 1.55167 1.62426 2.22929 2.60323
2.72895 3.69600 3.80820 3.97004 4.03607 4.06452 4.10146 4.27559
4.28904 4.35893 4.42048 4.52858 4.58727 4.84065 4.87147 4.91339
4.95431 5.03300 5.11316 5.21939 5.23073 5.28715 5.58855 5.64510
5.88498 6.05365 6.26182 6.56284 6.80203 6.94754 7.09582 8.36803
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.079536 B = 0.002634 C = 0.002574
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 351.956043 B =10628.516294 C =10876.897051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.080 4.080
3 S -0.309 6.309
4 C -0.069 4.069
5 C -0.092 4.092
6 C 0.067 3.933
7 O -0.340 6.340
8 C -0.001 4.001
9 C -0.164 4.164
10 C -0.209 4.209
11 C 0.054 3.946
12 C -0.499 4.499
13 H 0.077 0.923
14 C 0.032 3.968
15 N -0.831 5.831
16 Si 0.983 3.017
17 H -0.261 1.261
18 H -0.269 1.269
19 H -0.259 1.259
20 C -0.154 4.154
21 C -0.134 4.134
22 H 0.059 0.941
23 H 0.060 0.940
24 H 0.091 0.909
25 H 0.090 0.910
26 H 0.090 0.910
27 H 0.096 0.904
28 H 0.095 0.905
29 H 0.073 0.927
30 H 0.075 0.925
31 H 0.063 0.937
32 H 0.060 0.940
33 H 0.129 0.871
34 H 0.107 0.893
35 H 0.288 0.712
36 H 0.110 0.890
37 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.756 -10.157 -2.000 18.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.228 4.228
3 S -0.084 6.084
4 C -0.217 4.217
5 C -0.131 4.131
6 C -0.010 4.010
7 O -0.256 6.256
8 C -0.045 4.045
9 C -0.183 4.183
10 C -0.229 4.229
11 C 0.052 3.948
12 C -0.529 4.529
13 H 0.095 0.905
14 C -0.182 4.182
15 N -0.458 5.458
16 Si 0.804 3.196
17 H -0.185 1.185
18 H -0.194 1.194
19 H -0.183 1.183
20 C -0.173 4.173
21 C -0.153 4.153
22 H 0.078 0.922
23 H 0.079 0.921
24 H 0.110 0.890
25 H 0.109 0.891
26 H 0.108 0.892
27 H 0.115 0.885
28 H 0.113 0.887
29 H 0.091 0.909
30 H 0.093 0.907
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.147 0.853
34 H 0.125 0.875
35 H 0.098 0.902
36 H 0.128 0.872
37 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -16.470 -8.881 -1.850 18.803
hybrid contribution 1.640 -0.870 0.039 1.857
sum -14.830 -9.751 -1.811 17.841
Atomic orbital electron populations
1.21531 0.91394 1.03647 1.02795 1.23394 1.00767 0.92815 1.05854
1.87174 1.06591 1.16329 1.98265 1.23123 0.92302 0.99866 1.06415
1.21086 0.91620 0.96337 1.04055 1.22673 0.92534 0.84294 1.01546
1.85793 1.17218 1.31616 1.90955 1.18669 0.81399 0.94047 1.10379
1.20713 0.94748 0.96299 1.06516 1.20819 0.93757 0.97024 1.11266
1.17967 0.94311 0.91617 0.90882 1.19693 0.91812 1.03333 1.38032
0.90490 1.26764 1.05325 0.94246 0.91839 1.69882 1.40774 1.11862
1.23248 0.85239 0.76143 0.78644 0.79580 1.18544 1.19356 1.18347
1.20910 0.92094 0.98794 1.05523 1.20030 0.94072 0.95346 1.05831
0.92157 0.92126 0.89032 0.89097 0.89158 0.88535 0.88664 0.90856
0.90673 0.91873 0.92173 0.85283 0.87529 0.90177 0.87170 0.87337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.46 9.92 71.98 0.71 -0.74 16
2 C -0.08 -1.04 6.66 71.98 0.48 -0.56 16
3 S -0.31 -6.14 21.74 -56.49 -1.23 -7.37 16
4 C -0.07 -1.28 5.94 71.98 0.43 -0.85 16
5 C -0.09 -2.22 5.59 30.60 0.17 -2.05 16
6 C 0.07 1.94 4.73 71.98 0.34 2.28 16
7 O -0.34 -13.60 10.12 -89.91 -0.91 -14.51 16
8 C 0.00 -0.05 6.71 22.79 0.15 0.10 16
9 C -0.16 -7.25 8.96 22.11 0.20 -7.05 16
10 C -0.21 -10.31 9.74 22.48 0.22 -10.09 16
11 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16
12 C -0.50 -27.15 9.04 23.40 0.21 -26.94 16
13 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16
14 C 0.03 1.65 5.13 85.24 0.44 2.08 16
15 N -0.83 -44.19 10.96 21.82 0.24 -43.95 16
16 Si 0.98 38.52 29.60 68.60 2.03 40.55 16
17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16
18 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16
19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16
20 C -0.15 -8.35 8.64 22.49 0.19 -8.16 16
21 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16
22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
24 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16
25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16
26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
29 H 0.07 1.86 8.14 -2.38 -0.02 1.85 16
30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
31 H 0.06 1.71 7.63 -2.38 -0.02 1.69 16
32 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16
33 H 0.13 4.67 6.27 -2.91 -0.02 4.65 16
34 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16
35 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16
36 H 0.11 6.20 6.16 -2.91 -0.02 6.18 16
37 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16
Total: -1.00 -61.48 323.63 4.81 -56.67
By element:
Atomic # 1 Polarization: 23.11 SS G_CDS: 1.03 Total: 24.14 kcal
Atomic # 6 Polarization: -59.18 SS G_CDS: 3.65 Total: -55.53 kcal
Atomic # 7 Polarization: -44.19 SS G_CDS: 0.24 Total: -43.95 kcal
Atomic # 8 Polarization: -13.60 SS G_CDS: -0.91 Total: -14.51 kcal
Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal
Atomic # 16 Polarization: -6.14 SS G_CDS: -1.23 Total: -7.37 kcal
Total: -61.48 4.81 -56.67 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000135273332.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.833 kcal
(2) G-P(sol) polarization free energy of solvation -61.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.839 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds