Wall clock time and date at job start Mon Mar 30 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81405 * 109.46790 * 2 1 4 4 C 1.81401 * 102.99588 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46911 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.47107 * 180.02562 * 6 5 4 8 8 C 1.35674 * 117.00062 * 180.02562 * 7 6 5 9 9 C 1.39314 * 119.81783 * 0.24781 * 8 7 6 10 10 C 1.36432 * 120.18227 * 180.26300 * 9 8 7 11 11 C 1.40835 * 119.81560 * 359.47198 * 10 9 8 12 12 C 1.41214 * 120.18162 * 180.30293 * 11 10 9 13 13 H 1.08001 * 119.99977 * 24.53823 * 12 11 10 14 14 C 1.39897 * 119.99713 * 204.53932 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.91647 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.92014 * 14 12 11 17 17 H 1.48492 * 109.47277 * 59.99635 * 16 14 12 18 18 H 1.48504 * 109.46921 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46900 * 299.99907 * 16 14 12 20 20 C 1.40833 * 119.64086 * 0.27678 * 11 10 9 21 21 C 1.36441 * 119.81171 * 0.02562 * 20 11 10 22 22 H 1.08990 * 109.47727 * 299.99787 * 1 2 3 23 23 H 1.08999 * 109.47100 * 60.00238 * 1 2 3 24 24 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47237 * 239.99886 * 2 1 3 26 26 H 1.08999 * 109.47100 * 119.99761 * 2 1 3 27 27 H 1.09004 * 109.47068 * 60.00483 * 4 3 2 28 28 H 1.08995 * 109.47763 * 299.99732 * 4 3 2 29 29 H 1.09004 * 109.46760 * 60.00417 * 5 4 3 30 30 H 1.08996 * 109.47250 * 300.00194 * 5 4 3 31 31 H 1.09004 * 109.46943 * 60.00576 * 6 5 4 32 32 H 1.08996 * 109.47273 * 300.00226 * 6 5 4 33 33 H 1.07997 * 119.90843 * 0.02879 * 9 8 7 34 34 H 1.08000 * 120.09762 * 179.74428 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.09911 * 180.02562 * 20 11 10 37 37 H 1.07992 * 119.91021 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 0.0008 5 6 4.6064 2.8818 0.0002 6 6 6.1266 2.7094 0.0015 7 8 6.7517 3.9944 0.0016 8 6 8.1082 4.0195 0.0022 9 6 8.8232 2.8238 -0.0026 10 6 10.1874 2.8403 0.0034 11 6 10.8728 4.0706 0.0031 12 6 12.2847 4.0967 0.0028 13 1 12.8402 3.2560 -0.3857 14 6 12.9637 5.2117 0.5057 15 7 12.3413 6.0616 1.2822 16 14 14.7589 5.4873 0.0687 17 1 14.8954 5.6183 -1.4041 18 1 15.2427 6.7292 0.7237 19 1 15.5658 4.3331 0.5399 20 6 10.1425 5.2748 0.0026 21 6 8.7785 5.2409 0.0029 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.2405 0.9543 -0.8891 28 1 4.2399 0.9546 0.8909 29 1 4.3029 3.4337 0.8899 30 1 4.3036 3.4328 -0.8901 31 1 6.4304 2.1572 -0.8879 32 1 6.4290 2.1585 0.8921 33 1 8.2961 1.8812 -0.0072 34 1 10.7402 1.9125 0.0039 35 1 12.8122 6.8345 1.6312 36 1 10.6605 6.2224 0.0019 37 1 8.2169 6.1633 0.0029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135273332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:49 Heat of formation + Delta-G solvation = -54.839203 kcal Electronic energy + Delta-G solvation = -16713.959489 eV Core-core repulsion = 13967.223491 eV Total energy + Delta-G solvation = -2746.735998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54939 -38.31393 -35.48052 -34.68717 -33.65363 -31.65844 -30.91046 -28.00211 -26.45495 -24.62165 -23.33842 -22.49242 -21.94083 -19.23148 -18.72942 -17.21844 -17.17738 -17.04257 -16.43305 -15.85338 -15.75046 -15.34403 -15.11222 -14.87140 -14.14395 -14.02734 -13.99777 -13.65421 -13.33544 -13.06406 -12.90050 -12.78069 -12.58993 -12.45948 -12.30194 -12.10641 -11.86702 -11.70296 -11.46075 -11.18512 -10.92149 -10.87141 -9.56538 -8.93333 -8.71982 -8.59629 -6.23070 0.61244 0.95043 1.02471 1.39995 1.50929 1.55167 1.62426 2.22929 2.60323 2.72895 3.69600 3.80820 3.97004 4.03607 4.06452 4.10146 4.27559 4.28904 4.35893 4.42048 4.52858 4.58727 4.84065 4.87147 4.91339 4.95431 5.03300 5.11316 5.21939 5.23073 5.28715 5.58855 5.64510 5.88498 6.05365 6.26182 6.56284 6.80203 6.94754 7.09582 8.36803 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.079536 B = 0.002634 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.956043 B =10628.516294 C =10876.897051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 S -0.309 6.309 4 C -0.069 4.069 5 C -0.092 4.092 6 C 0.067 3.933 7 O -0.340 6.340 8 C -0.001 4.001 9 C -0.164 4.164 10 C -0.209 4.209 11 C 0.054 3.946 12 C -0.499 4.499 13 H 0.077 0.923 14 C 0.032 3.968 15 N -0.831 5.831 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.259 1.259 20 C -0.154 4.154 21 C -0.134 4.134 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.288 0.712 36 H 0.110 0.890 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.756 -10.157 -2.000 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.228 4.228 3 S -0.084 6.084 4 C -0.217 4.217 5 C -0.131 4.131 6 C -0.010 4.010 7 O -0.256 6.256 8 C -0.045 4.045 9 C -0.183 4.183 10 C -0.229 4.229 11 C 0.052 3.948 12 C -0.529 4.529 13 H 0.095 0.905 14 C -0.182 4.182 15 N -0.458 5.458 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.194 1.194 19 H -0.183 1.183 20 C -0.173 4.173 21 C -0.153 4.153 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.470 -8.881 -1.850 18.803 hybrid contribution 1.640 -0.870 0.039 1.857 sum -14.830 -9.751 -1.811 17.841 Atomic orbital electron populations 1.21531 0.91394 1.03647 1.02795 1.23394 1.00767 0.92815 1.05854 1.87174 1.06591 1.16329 1.98265 1.23123 0.92302 0.99866 1.06415 1.21086 0.91620 0.96337 1.04055 1.22673 0.92534 0.84294 1.01546 1.85793 1.17218 1.31616 1.90955 1.18669 0.81399 0.94047 1.10379 1.20713 0.94748 0.96299 1.06516 1.20819 0.93757 0.97024 1.11266 1.17967 0.94311 0.91617 0.90882 1.19693 0.91812 1.03333 1.38032 0.90490 1.26764 1.05325 0.94246 0.91839 1.69882 1.40774 1.11862 1.23248 0.85239 0.76143 0.78644 0.79580 1.18544 1.19356 1.18347 1.20910 0.92094 0.98794 1.05523 1.20030 0.94072 0.95346 1.05831 0.92157 0.92126 0.89032 0.89097 0.89158 0.88535 0.88664 0.90856 0.90673 0.91873 0.92173 0.85283 0.87529 0.90177 0.87170 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.92 71.98 0.71 -0.74 16 2 C -0.08 -1.04 6.66 71.98 0.48 -0.56 16 3 S -0.31 -6.14 21.74 -56.49 -1.23 -7.37 16 4 C -0.07 -1.28 5.94 71.98 0.43 -0.85 16 5 C -0.09 -2.22 5.59 30.60 0.17 -2.05 16 6 C 0.07 1.94 4.73 71.98 0.34 2.28 16 7 O -0.34 -13.60 10.12 -89.91 -0.91 -14.51 16 8 C 0.00 -0.05 6.71 22.79 0.15 0.10 16 9 C -0.16 -7.25 8.96 22.11 0.20 -7.05 16 10 C -0.21 -10.31 9.74 22.48 0.22 -10.09 16 11 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16 12 C -0.50 -27.15 9.04 23.40 0.21 -26.94 16 13 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 14 C 0.03 1.65 5.13 85.24 0.44 2.08 16 15 N -0.83 -44.19 10.96 21.82 0.24 -43.95 16 16 Si 0.98 38.52 29.60 68.60 2.03 40.55 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 C -0.15 -8.35 8.64 22.49 0.19 -8.16 16 21 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16 22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.86 8.14 -2.38 -0.02 1.85 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.71 7.63 -2.38 -0.02 1.69 16 32 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 33 H 0.13 4.67 6.27 -2.91 -0.02 4.65 16 34 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 36 H 0.11 6.20 6.16 -2.91 -0.02 6.18 16 37 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -61.48 323.63 4.81 -56.67 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.03 Total: 24.14 kcal Atomic # 6 Polarization: -59.18 SS G_CDS: 3.65 Total: -55.53 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.24 Total: -43.95 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.91 Total: -14.51 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: -6.14 SS G_CDS: -1.23 Total: -7.37 kcal Total: -61.48 4.81 -56.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135273332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.833 kcal (2) G-P(sol) polarization free energy of solvation -61.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds