Wall clock time and date at job start Mon Mar 30 2020 06:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37814 * 119.94058 * 2 1 4 4 C 1.39705 * 119.87749 * 179.97438 * 3 2 1 5 5 C 1.47596 * 120.12387 * 180.02562 * 4 3 2 6 6 O 1.21494 * 119.99897 * 359.72762 * 5 4 3 7 7 O 1.34723 * 120.00423 * 179.97438 * 5 4 3 8 8 C 1.45198 * 117.00534 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47027 * 30.00087 * 8 7 5 10 10 C 1.53003 * 109.46946 * 270.00415 * 8 7 5 11 11 C 1.50697 * 109.47183 * 150.00086 * 8 7 5 12 12 H 1.08001 * 120.00237 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99686 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00457 * 0.02562 * 13 11 8 15 15 Si 1.86810 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47053 * 89.99916 * 15 13 11 17 17 H 1.48494 * 109.47147 * 210.00364 * 15 13 11 18 18 H 1.48504 * 109.46818 * 330.00097 * 15 13 11 19 19 C 1.39697 * 119.75448 * 0.27520 * 4 3 2 20 20 C 1.37826 * 119.87330 * 359.46784 * 19 4 3 21 21 C 1.50704 * 119.93703 * 180.27865 * 20 19 4 22 22 C 1.38669 * 119.93756 * 180.02562 * 2 1 3 23 23 F 1.35095 * 119.87558 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.47034 * 90.00397 * 1 2 3 25 25 H 1.08999 * 109.46784 * 209.99817 * 1 2 3 26 26 H 1.08997 * 109.47261 * 330.00072 * 1 2 3 27 27 H 1.08002 * 120.06243 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46818 * 299.99445 * 10 8 7 29 29 H 1.08999 * 109.47362 * 60.00092 * 10 8 7 30 30 H 1.08999 * 109.47111 * 179.97438 * 10 8 7 31 31 H 0.96998 * 120.00219 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.06402 * 179.70320 * 19 4 3 33 33 H 1.09003 * 109.46797 * 270.25628 * 21 20 19 34 34 H 1.08995 * 109.46957 * 30.25652 * 21 20 19 35 35 H 1.08995 * 109.46598 * 150.26087 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1942 0.0000 4 6 3.5919 1.1927 0.0005 5 6 4.3340 2.4685 0.0011 6 8 3.7300 3.5226 -0.0039 7 8 5.6813 2.4642 0.0022 8 6 6.3447 3.7557 0.0033 9 1 5.7187 4.4853 0.5169 10 6 6.5787 4.2100 -1.4389 11 6 7.6682 3.6400 0.7146 12 1 7.9798 2.6907 1.1245 13 6 8.4817 4.7460 0.8412 14 7 8.1025 5.9020 0.3416 15 14 10.1227 4.6025 1.7224 16 1 11.1805 4.2449 0.7435 17 1 10.4571 5.9010 2.3604 18 1 10.0347 3.5474 2.7637 19 6 4.2839 -0.0209 -0.0047 20 6 3.5857 -1.2092 0.0006 21 6 4.3308 -2.5192 0.0013 22 6 2.1990 -1.2017 -0.0005 23 9 1.5198 -2.3694 -0.0016 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6549 2.1296 0.0004 28 1 7.2048 3.4804 -1.9526 29 1 5.6215 4.2938 -1.9534 30 1 7.0764 5.1798 -1.4381 31 1 8.6747 6.6801 0.4310 32 1 5.3638 -0.0279 -0.0092 33 1 4.5108 -2.8353 -1.0262 34 1 5.2838 -2.3949 0.5155 35 1 3.7365 -3.2748 0.5150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155504321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:14 Heat of formation + Delta-G solvation = -125.876224 kcal Electronic energy + Delta-G solvation = -19639.354158 eV Core-core repulsion = 16323.324587 eV Total energy + Delta-G solvation = -3316.029571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.08879 -39.99431 -38.59032 -35.72911 -33.91125 -33.28206 -31.84348 -29.54483 -27.58392 -26.83830 -25.35216 -24.16766 -21.51036 -21.09445 -19.56002 -17.60749 -17.28175 -16.93969 -16.12897 -15.94596 -15.58368 -14.98326 -14.56356 -14.10652 -13.58724 -13.52529 -13.40395 -13.31853 -13.19498 -12.92358 -12.33613 -12.16393 -12.12622 -11.83933 -11.54621 -11.22163 -11.10421 -11.04679 -10.84907 -10.41289 -10.30283 -9.79716 -9.58142 -8.94141 -8.84262 -8.70148 -8.51135 -6.20582 -4.27751 0.66309 1.11555 2.83708 3.23476 3.28558 3.31975 3.54112 3.78985 4.05921 4.31013 4.50378 4.52684 4.98470 5.06675 5.12694 5.21648 5.24798 5.41499 5.48192 5.57713 5.67399 5.71583 5.95538 5.98301 6.08787 6.18602 6.33529 6.61210 6.72920 6.87031 6.88288 7.10855 7.56191 7.69275 7.89062 8.10368 8.56745 8.83768 9.37729 10.86903 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.004387 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.856378 B = 6380.488815 C = 7017.212061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.130 4.130 3 C -0.040 4.040 4 C -0.114 4.114 5 C 0.497 3.503 6 O -0.515 6.515 7 O -0.350 6.350 8 C 0.216 3.784 9 H 0.048 0.952 10 C -0.155 4.155 11 C -0.521 4.521 12 H 0.069 0.931 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.912 3.088 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.041 4.041 20 C -0.130 4.130 21 C -0.112 4.112 22 C 0.116 3.884 23 F -0.135 7.135 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.037 0.963 29 H 0.016 0.984 30 H 0.100 0.900 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.676 -13.837 -1.319 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.131 4.131 3 C -0.059 4.059 4 C -0.115 4.115 5 C 0.341 3.659 6 O -0.406 6.406 7 O -0.266 6.266 8 C 0.164 3.836 9 H 0.066 0.934 10 C -0.213 4.213 11 C -0.559 4.559 12 H 0.087 0.913 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.739 3.261 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.059 4.059 20 C -0.131 4.131 21 C -0.169 4.169 22 C 0.097 3.903 23 F -0.113 7.113 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.164 0.836 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.756 -13.347 -1.335 17.193 hybrid contribution 0.742 0.029 0.366 0.828 sum -10.014 -13.318 -0.969 16.691 Atomic orbital electron populations 1.20706 0.89664 1.03454 1.02918 1.19782 0.97220 0.91319 1.04808 1.21034 0.92371 0.97934 0.94527 1.19462 0.93290 0.92198 1.06548 1.20870 0.83176 0.88322 0.73531 1.90775 1.70187 1.33235 1.46444 1.86533 1.17537 1.40926 1.81600 1.20689 0.91513 0.76605 0.94839 0.93432 1.22171 0.98630 1.03996 0.96495 1.21011 1.01515 0.96854 1.36567 0.91256 1.24883 0.98734 0.94744 0.95556 1.69895 1.37760 1.00223 1.44770 0.86268 0.82566 0.77631 0.79639 1.20338 1.20954 1.19606 1.21354 1.01379 0.89616 0.93572 1.19885 0.91615 0.97185 1.04380 1.20725 1.00292 0.92890 1.02972 1.17605 0.89398 0.80901 1.02408 1.91453 1.80032 1.46237 1.93603 0.90732 0.91172 0.90655 0.83620 0.94367 0.96462 0.88168 0.92357 0.83073 0.90686 0.90438 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.83 36.01 0.35 -0.68 16 2 C -0.13 -1.61 5.88 -104.62 -0.62 -2.22 16 3 C -0.04 -0.58 9.24 -39.19 -0.36 -0.94 16 4 C -0.11 -1.90 5.87 -104.99 -0.62 -2.52 16 5 C 0.50 10.62 7.87 34.55 0.27 10.89 16 6 O -0.52 -12.23 15.60 -19.26 -0.30 -12.53 16 7 O -0.35 -8.26 9.11 -40.56 -0.37 -8.63 16 8 C 0.22 5.77 2.56 -27.88 -0.07 5.70 16 9 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 10 C -0.16 -3.92 9.33 37.16 0.35 -3.58 16 11 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 12 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 15 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.04 -0.60 9.26 -39.19 -0.36 -0.96 16 20 C -0.13 -1.63 5.88 -104.61 -0.62 -2.24 16 21 C -0.11 -1.09 9.83 36.01 0.35 -0.74 16 22 C 0.12 1.46 7.19 -39.26 -0.28 1.18 16 23 F -0.13 -1.60 15.66 2.25 0.04 -1.57 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.61 7.63 -51.93 -0.40 0.21 16 26 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.15 2.02 7.65 -52.49 -0.40 1.61 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 32 H 0.15 2.15 7.61 -52.49 -0.40 1.75 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.07 0.62 7.63 -51.93 -0.40 0.23 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -30.00 308.10 -6.74 -36.74 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.36 Total: -0.78 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -2.00 Total: -9.28 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.67 Total: -21.16 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.00 -6.74 -36.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155504321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.132 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds