Wall clock time and date at job start Mon Mar 30 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37814 * 119.94058 * 2 1 4 4 C 1.39705 * 119.87749 * 179.97438 * 3 2 1 5 5 C 1.47596 * 120.12387 * 180.02562 * 4 3 2 6 6 O 1.21494 * 119.99897 * 359.72762 * 5 4 3 7 7 O 1.34723 * 120.00423 * 179.97438 * 5 4 3 8 8 C 1.45198 * 117.00534 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47027 * 30.00087 * 8 7 5 10 10 C 1.53003 * 109.46946 * 270.00415 * 8 7 5 11 11 C 1.50697 * 109.47183 * 150.00086 * 8 7 5 12 12 H 1.08001 * 120.00237 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99686 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00457 * 0.02562 * 13 11 8 15 15 Si 1.86810 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47053 * 89.99916 * 15 13 11 17 17 H 1.48494 * 109.47147 * 210.00364 * 15 13 11 18 18 H 1.48504 * 109.46818 * 330.00097 * 15 13 11 19 19 C 1.39697 * 119.75448 * 0.27520 * 4 3 2 20 20 C 1.37826 * 119.87330 * 359.46784 * 19 4 3 21 21 C 1.50704 * 119.93703 * 180.27865 * 20 19 4 22 22 C 1.38669 * 119.93756 * 180.02562 * 2 1 3 23 23 F 1.35095 * 119.87558 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.47034 * 90.00397 * 1 2 3 25 25 H 1.08999 * 109.46784 * 209.99817 * 1 2 3 26 26 H 1.08997 * 109.47261 * 330.00072 * 1 2 3 27 27 H 1.08002 * 120.06243 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46818 * 299.99445 * 10 8 7 29 29 H 1.08999 * 109.47362 * 60.00092 * 10 8 7 30 30 H 1.08999 * 109.47111 * 179.97438 * 10 8 7 31 31 H 0.96998 * 120.00219 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.06402 * 179.70320 * 19 4 3 33 33 H 1.09003 * 109.46797 * 270.25628 * 21 20 19 34 34 H 1.08995 * 109.46957 * 30.25652 * 21 20 19 35 35 H 1.08995 * 109.46598 * 150.26087 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1942 0.0000 4 6 3.5919 1.1927 0.0005 5 6 4.3340 2.4685 0.0011 6 8 3.7300 3.5226 -0.0039 7 8 5.6813 2.4642 0.0022 8 6 6.3447 3.7557 0.0033 9 1 5.7187 4.4853 0.5169 10 6 6.5787 4.2100 -1.4389 11 6 7.6682 3.6400 0.7146 12 1 7.9798 2.6907 1.1245 13 6 8.4817 4.7460 0.8412 14 7 8.1025 5.9020 0.3416 15 14 10.1227 4.6025 1.7224 16 1 11.1805 4.2449 0.7435 17 1 10.4571 5.9010 2.3604 18 1 10.0347 3.5474 2.7637 19 6 4.2839 -0.0209 -0.0047 20 6 3.5857 -1.2092 0.0006 21 6 4.3308 -2.5192 0.0013 22 6 2.1990 -1.2017 -0.0005 23 9 1.5198 -2.3694 -0.0016 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6549 2.1296 0.0004 28 1 7.2048 3.4804 -1.9526 29 1 5.6215 4.2938 -1.9534 30 1 7.0764 5.1798 -1.4381 31 1 8.6747 6.6801 0.4310 32 1 5.3638 -0.0279 -0.0092 33 1 4.5108 -2.8353 -1.0262 34 1 5.2838 -2.3949 0.5155 35 1 3.7365 -3.2748 0.5150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155504321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:13 Heat of formation + Delta-G solvation = -140.917075 kcal Electronic energy + Delta-G solvation = -19640.006378 eV Core-core repulsion = 16323.324587 eV Total energy + Delta-G solvation = -3316.681791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.08325 -41.54016 -39.95152 -37.59181 -35.37602 -34.81690 -33.06788 -31.54028 -28.46767 -27.82269 -27.46656 -25.64706 -23.13653 -22.24249 -21.23859 -18.96599 -18.68343 -18.61060 -17.54497 -17.37844 -17.00632 -16.70310 -16.41887 -15.14503 -15.00707 -14.58352 -14.48640 -14.24996 -14.18947 -14.15109 -14.08550 -13.85423 -13.26064 -13.08253 -12.93333 -12.90058 -12.80349 -12.55974 -12.41147 -12.17029 -12.07238 -11.62574 -11.52421 -11.01762 -10.60606 -9.86255 -9.80866 -8.29094 -6.46201 -0.55490 0.06323 1.39916 1.42924 1.45049 1.55849 1.88444 2.40459 2.48629 3.01414 3.01992 3.49848 3.58578 3.71072 4.00791 4.07577 4.39733 4.41951 4.53161 4.66734 4.73267 4.76560 4.77066 4.80599 4.80972 5.05789 5.06779 5.08328 5.17379 5.21449 5.23522 5.46991 5.59920 5.69596 5.87274 6.02876 6.57710 6.86990 7.25174 8.78854 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.004387 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.856378 B = 6380.488815 C = 7017.212061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.043 4.043 4 C -0.137 4.137 5 C 0.493 3.507 6 O -0.548 6.548 7 O -0.353 6.353 8 C 0.217 3.783 9 H 0.009 0.991 10 C -0.143 4.143 11 C -0.548 4.548 12 H 0.070 0.930 13 C 0.017 3.983 14 N -0.917 5.917 15 Si 0.984 3.016 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.265 1.265 19 C -0.044 4.044 20 C -0.123 4.123 21 C -0.113 4.113 22 C 0.122 3.878 23 F -0.125 7.125 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.047 0.953 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.271 0.729 32 H 0.150 0.850 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 -16.063 -1.098 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.062 4.062 4 C -0.138 4.138 5 C 0.340 3.660 6 O -0.441 6.441 7 O -0.270 6.270 8 C 0.164 3.836 9 H 0.026 0.974 10 C -0.200 4.200 11 C -0.585 4.585 12 H 0.088 0.912 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.807 3.193 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.062 4.062 20 C -0.124 4.124 21 C -0.169 4.169 22 C 0.102 3.898 23 F -0.104 7.104 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.163 0.837 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.899 -15.596 -1.122 19.060 hybrid contribution 0.645 0.641 0.286 0.953 sum -10.253 -14.955 -0.836 18.152 Atomic orbital electron populations 1.20822 0.87206 1.04572 1.04180 1.20043 0.98876 0.90328 1.03082 1.21069 0.91366 0.98952 0.94765 1.19278 0.93960 0.90475 1.10126 1.21706 0.82267 0.89877 0.72141 1.90743 1.70318 1.34925 1.48159 1.86516 1.19145 1.39090 1.82201 1.20418 0.90968 0.77145 0.95051 0.97365 1.21996 0.98861 1.03197 0.95976 1.21283 1.02229 0.97358 1.37677 0.91201 1.25833 1.02446 0.94072 0.95909 1.70016 1.39204 1.00960 1.45322 0.85165 0.77689 0.77860 0.78596 1.19119 1.20367 1.18896 1.21339 1.01409 0.89572 0.93928 1.20120 0.91872 0.97586 1.02829 1.20831 1.00512 0.91394 1.04171 1.17697 0.89503 0.81218 1.01353 1.91483 1.79824 1.45707 1.93358 0.89277 0.90021 0.89637 0.83660 0.93362 0.95859 0.89916 0.91953 0.83232 0.89279 0.89642 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.83 71.24 0.70 -1.06 16 2 C -0.12 -2.77 5.88 -19.86 -0.12 -2.89 16 3 C -0.04 -1.22 9.24 22.52 0.21 -1.02 16 4 C -0.14 -4.63 5.87 -20.10 -0.12 -4.75 16 5 C 0.49 21.92 7.87 70.29 0.55 22.47 16 6 O -0.55 -27.33 15.60 19.86 0.31 -27.02 16 7 O -0.35 -17.29 9.11 -56.33 -0.51 -17.80 16 8 C 0.22 12.07 2.56 29.85 0.08 12.15 16 9 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 10 C -0.14 -7.42 9.33 71.98 0.67 -6.75 16 11 C -0.55 -31.04 8.90 25.60 0.23 -30.81 16 12 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 13 C 0.02 0.94 5.30 84.65 0.45 1.39 16 14 N -0.92 -52.62 11.32 21.45 0.24 -52.37 16 15 Si 0.98 42.53 29.54 68.60 2.03 44.56 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 19 C -0.04 -1.26 9.26 22.52 0.21 -1.05 16 20 C -0.12 -2.83 5.88 -19.86 -0.12 -2.95 16 21 C -0.11 -1.87 9.83 71.24 0.70 -1.17 16 22 C 0.12 2.74 7.19 22.48 0.16 2.90 16 23 F -0.13 -2.56 15.66 44.97 0.70 -1.86 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.13 7.63 -2.39 -0.02 1.12 16 26 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 27 H 0.15 4.05 7.65 -2.91 -0.02 4.03 16 28 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 4.59 6.07 -2.39 -0.01 4.58 16 31 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.15 4.24 7.61 -2.91 -0.02 4.22 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.08 1.18 7.63 -2.39 -0.02 1.16 16 Total: -1.00 -65.64 308.10 7.47 -58.17 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.10 Total: 9.87 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.60 Total: -13.54 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.24 Total: -52.37 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -0.20 Total: -44.82 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.70 Total: -1.86 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -65.64 7.47 -58.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155504321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.752 kcal (2) G-P(sol) polarization free energy of solvation -65.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds