Wall clock time and date at job start Mon Mar 30 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35947 * 116.99531 * 2 1 4 4 C 1.38733 * 120.03354 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.96948 * 180.02562 * 4 3 2 6 6 C 1.38469 * 120.03360 * 0.02562 * 5 4 3 7 7 F 1.35102 * 119.97339 * 179.97438 * 6 5 4 8 8 C 1.38435 * 120.06051 * 359.97438 * 6 5 4 9 9 C 1.38172 * 120.02905 * 0.02562 * 8 6 5 10 10 C 1.50696 * 120.01649 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.27610 * 217.09195 * 10 9 8 12 12 C 1.54947 * 110.31365 * 94.99963 * 10 9 8 13 13 C 1.55306 * 100.94265 * 204.64049 * 12 10 9 14 14 C 1.54380 * 102.25066 * 34.13537 * 13 12 10 15 15 H 1.09001 * 109.83395 * 98.15622 * 14 13 12 16 16 C 1.50705 * 109.82925 * 219.03458 * 14 13 12 17 17 H 1.08004 * 119.99836 * 359.97438 * 16 14 13 18 18 C 1.37877 * 120.00180 * 180.02562 * 16 14 13 19 19 N 1.31508 * 120.00053 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99865 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47072 * 60.00140 * 20 18 16 22 22 H 1.48500 * 109.47079 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47321 * 300.00228 * 20 18 16 24 24 O 1.43231 * 107.59243 * 338.63959 * 14 13 12 25 25 H 1.09008 * 109.46649 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47158 * 299.99751 * 1 2 3 27 27 H 1.08995 * 109.47624 * 60.00583 * 1 2 3 28 28 H 1.07997 * 120.01078 * 0.05367 * 4 3 2 29 29 H 1.08000 * 119.98352 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.98595 * 179.72574 * 8 6 5 31 31 H 1.09008 * 111.12194 * 322.56063 * 12 10 9 32 32 H 1.09000 * 111.12574 * 86.72086 * 12 10 9 33 33 H 1.09002 * 110.84258 * 152.32314 * 13 12 10 34 34 H 1.08993 * 110.85242 * 275.94077 * 13 12 10 35 35 H 0.96992 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2911 2.3752 -0.0005 5 6 1.9194 3.6053 -0.0011 6 6 3.3022 3.6771 -0.0016 7 9 3.9156 4.8809 -0.0027 8 6 4.0569 2.5166 -0.0011 9 6 3.4310 1.2847 -0.0005 10 6 4.2528 0.0216 -0.0005 11 1 3.7749 -0.7400 -0.6168 12 6 4.4405 -0.4980 1.4471 13 6 5.7509 -1.3182 1.2983 14 6 6.5301 -0.5026 0.2443 15 1 7.2534 0.1456 0.7390 16 6 7.2425 -1.4360 -0.7003 17 1 7.1557 -2.5048 -0.5710 18 6 8.0059 -0.9257 -1.7287 19 7 8.1128 0.3756 -1.8852 20 14 8.8883 -2.0829 -2.8999 21 1 7.8936 -2.9464 -3.5857 22 1 9.6349 -1.2904 -3.9098 23 1 9.8373 -2.9317 -2.1358 24 8 5.5808 0.2907 -0.4776 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2126 2.3195 -0.0001 29 1 1.3319 4.5115 -0.0019 30 1 5.1354 2.5740 -0.0060 31 1 4.5711 0.3275 2.1469 32 1 3.6093 -1.1365 1.7462 33 1 6.2956 -1.3536 2.2418 34 1 5.5402 -2.3233 0.9329 35 1 8.6495 0.7346 -2.6089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166538616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:01 Heat of formation + Delta-G solvation = -104.288343 kcal Electronic energy + Delta-G solvation = -20311.725420 eV Core-core repulsion = 16996.631969 eV Total energy + Delta-G solvation = -3315.093450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.51916 -40.14184 -38.10599 -36.81806 -32.78771 -31.49256 -30.87676 -29.58625 -27.95517 -27.06086 -24.77172 -22.50799 -21.95828 -20.38860 -20.09397 -17.95890 -17.02055 -16.71756 -16.44360 -15.75847 -15.15148 -15.01060 -14.78271 -14.53831 -14.30554 -14.01479 -13.28469 -12.97539 -12.71795 -12.49650 -12.18102 -12.07898 -11.76062 -11.70151 -11.22493 -10.85925 -10.80934 -10.57702 -10.40515 -10.35561 -10.12816 -9.81865 -9.17876 -8.73018 -8.49358 -7.94796 -7.73963 -5.94815 -4.08535 1.37533 1.43731 3.33692 3.35013 3.39912 3.41895 3.76081 4.46497 4.52084 4.69723 4.84736 5.02408 5.08949 5.14976 5.36019 5.39001 5.44275 5.52333 5.57864 5.75949 5.96694 6.01794 6.15011 6.25397 6.36086 6.40375 6.52354 6.56620 6.68781 6.81214 6.92599 7.01807 7.46141 7.67474 7.92394 8.31954 8.61228 9.06711 9.63000 11.11939 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020320 B = 0.005977 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.607336 B = 4683.277071 C = 5377.899424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.118 3.882 4 C -0.188 4.188 5 C -0.126 4.126 6 C 0.057 3.943 7 F -0.144 7.144 8 C -0.086 4.086 9 C -0.071 4.071 10 C 0.122 3.878 11 H 0.071 0.929 12 C -0.143 4.143 13 C -0.144 4.144 14 C 0.206 3.794 15 H 0.040 0.960 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.079 3.921 19 N -0.863 5.863 20 Si 0.889 3.111 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 O -0.353 6.353 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.156 0.844 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 2.828 5.343 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.072 3.928 4 C -0.207 4.207 5 C -0.145 4.145 6 C 0.038 3.962 7 F -0.123 7.123 8 C -0.105 4.105 9 C -0.072 4.072 10 C 0.063 3.937 11 H 0.089 0.911 12 C -0.181 4.181 13 C -0.182 4.182 14 C 0.151 3.849 15 H 0.057 0.943 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.126 4.126 19 N -0.499 5.499 20 Si 0.716 3.284 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.272 6.272 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.173 0.827 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.792 2.972 5.077 15.918 hybrid contribution 0.195 -0.308 -0.619 0.718 sum -14.597 2.664 4.458 15.493 Atomic orbital electron populations 1.23041 0.78938 1.03818 1.01049 1.86148 1.20799 1.26463 1.88696 1.18791 0.91488 0.84316 0.98155 1.20902 0.99814 0.91330 1.08607 1.20781 0.92646 0.98354 1.02726 1.17618 0.90696 0.80721 1.07209 1.91468 1.83449 1.42962 1.94399 1.21075 1.02229 0.89426 0.97774 1.19400 0.90048 0.96180 1.01600 1.21370 0.87480 0.90859 0.93986 0.91128 1.23189 0.98590 0.99646 0.96640 1.23213 0.95044 0.99950 0.99985 1.20305 0.86838 0.88966 0.88801 0.94272 1.21352 1.29677 0.92537 1.14685 0.92319 1.25048 0.95500 0.94873 0.97220 1.70008 1.38156 1.10993 1.30788 0.86736 0.79768 0.81003 0.80864 1.20173 1.21225 1.20174 1.88768 1.11653 1.65604 1.61224 0.88340 0.92863 0.92806 0.84912 0.85050 0.82653 0.91681 0.91415 0.92154 0.91473 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.45 9.69 -19.57 -0.19 -4.64 16 3 C 0.12 1.85 6.66 -39.23 -0.26 1.59 16 4 C -0.19 -2.45 9.04 -39.44 -0.36 -2.81 16 5 C -0.13 -1.73 10.02 -39.54 -0.40 -2.12 16 6 C 0.06 0.94 7.30 -39.42 -0.29 0.65 16 7 F -0.14 -2.44 17.27 2.25 0.04 -2.40 16 8 C -0.09 -1.62 9.35 -39.53 -0.37 -1.99 16 9 C -0.07 -1.33 5.12 -104.48 -0.53 -1.86 16 10 C 0.12 2.55 3.35 -26.86 -0.09 2.46 16 11 H 0.07 1.53 7.80 -51.93 -0.40 1.13 16 12 C -0.14 -2.64 6.56 -24.48 -0.16 -2.80 16 13 C -0.14 -2.99 6.53 -24.79 -0.16 -3.15 16 14 C 0.21 5.32 3.35 -27.16 -0.09 5.23 16 15 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 16 C -0.54 -15.36 8.75 -34.44 -0.30 -15.66 16 17 H 0.06 1.60 7.52 -52.48 -0.39 1.21 16 18 C 0.08 2.27 5.41 -17.82 -0.10 2.18 16 19 N -0.86 -25.88 12.93 55.43 0.72 -25.16 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 O -0.35 -9.13 9.01 -35.23 -0.32 -9.45 16 25 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 28 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.16 3.24 7.28 -52.48 -0.38 2.85 16 31 H 0.06 1.15 8.05 -51.92 -0.42 0.73 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.38 7.66 -51.93 -0.40 0.98 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -31.41 299.86 -6.74 -38.15 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.37 Total: -0.57 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.12 Total: -17.05 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.72 Total: -25.16 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.51 Total: -14.09 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.41 -6.74 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166538616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.141 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds