Wall clock time and date at job start Mon Mar 30 2020 07:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35947 * 116.99531 * 2 1 4 4 C 1.38733 * 120.03354 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.96948 * 180.02562 * 4 3 2 6 6 C 1.38469 * 120.03360 * 0.02562 * 5 4 3 7 7 F 1.35102 * 119.97339 * 179.97438 * 6 5 4 8 8 C 1.38435 * 120.06051 * 359.97438 * 6 5 4 9 9 C 1.38172 * 120.02905 * 0.02562 * 8 6 5 10 10 C 1.50696 * 120.01649 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.27610 * 217.09195 * 10 9 8 12 12 C 1.54947 * 110.31365 * 94.99963 * 10 9 8 13 13 C 1.55306 * 100.94265 * 204.64049 * 12 10 9 14 14 C 1.54380 * 102.25066 * 34.13537 * 13 12 10 15 15 H 1.09001 * 109.83395 * 98.15622 * 14 13 12 16 16 C 1.50705 * 109.82925 * 219.03458 * 14 13 12 17 17 H 1.08004 * 119.99836 * 359.97438 * 16 14 13 18 18 C 1.37877 * 120.00180 * 180.02562 * 16 14 13 19 19 N 1.31508 * 120.00053 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99865 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47072 * 60.00140 * 20 18 16 22 22 H 1.48500 * 109.47079 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47321 * 300.00228 * 20 18 16 24 24 O 1.43231 * 107.59243 * 338.63959 * 14 13 12 25 25 H 1.09008 * 109.46649 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47158 * 299.99751 * 1 2 3 27 27 H 1.08995 * 109.47624 * 60.00583 * 1 2 3 28 28 H 1.07997 * 120.01078 * 0.05367 * 4 3 2 29 29 H 1.08000 * 119.98352 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.98595 * 179.72574 * 8 6 5 31 31 H 1.09008 * 111.12194 * 322.56063 * 12 10 9 32 32 H 1.09000 * 111.12574 * 86.72086 * 12 10 9 33 33 H 1.09002 * 110.84258 * 152.32314 * 13 12 10 34 34 H 1.08993 * 110.85242 * 275.94077 * 13 12 10 35 35 H 0.96992 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2911 2.3752 -0.0005 5 6 1.9194 3.6053 -0.0011 6 6 3.3022 3.6771 -0.0016 7 9 3.9156 4.8809 -0.0027 8 6 4.0569 2.5166 -0.0011 9 6 3.4310 1.2847 -0.0005 10 6 4.2528 0.0216 -0.0005 11 1 3.7749 -0.7400 -0.6168 12 6 4.4405 -0.4980 1.4471 13 6 5.7509 -1.3182 1.2983 14 6 6.5301 -0.5026 0.2443 15 1 7.2534 0.1456 0.7390 16 6 7.2425 -1.4360 -0.7003 17 1 7.1557 -2.5048 -0.5710 18 6 8.0059 -0.9257 -1.7287 19 7 8.1128 0.3756 -1.8852 20 14 8.8883 -2.0829 -2.8999 21 1 7.8936 -2.9464 -3.5857 22 1 9.6349 -1.2904 -3.9098 23 1 9.8373 -2.9317 -2.1358 24 8 5.5808 0.2907 -0.4776 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2126 2.3195 -0.0001 29 1 1.3319 4.5115 -0.0019 30 1 5.1354 2.5740 -0.0060 31 1 4.5711 0.3275 2.1469 32 1 3.6093 -1.1365 1.7462 33 1 6.2956 -1.3536 2.2418 34 1 5.5402 -2.3233 0.9329 35 1 8.6495 0.7346 -2.6089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166538616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:00 Heat of formation + Delta-G solvation = -123.767103 kcal Electronic energy + Delta-G solvation = -20312.570082 eV Core-core repulsion = 16996.631969 eV Total energy + Delta-G solvation = -3315.938113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.81641 -41.35754 -39.73383 -38.03349 -34.80266 -33.03244 -32.61445 -30.81012 -29.59895 -27.98730 -26.61356 -24.04144 -23.16238 -22.01825 -21.81380 -19.08982 -18.60904 -18.26813 -17.98555 -16.84939 -16.68598 -16.60265 -16.33641 -15.97707 -15.61454 -15.33174 -14.99004 -14.51822 -13.97045 -13.86427 -13.72714 -13.63344 -13.35675 -12.77580 -12.76747 -12.52366 -12.41645 -12.30651 -12.04582 -11.81583 -11.66738 -11.48742 -11.10439 -10.67398 -10.10963 -9.76852 -9.02578 -8.12122 -6.34154 0.15153 0.20377 1.39289 1.42510 1.50076 2.36426 2.41119 2.51765 3.05250 3.29267 3.45656 3.68763 3.86243 3.98134 4.05399 4.16642 4.24131 4.46333 4.49553 4.55240 4.60109 4.69724 4.80028 4.80806 4.93179 4.94777 5.07285 5.11212 5.14942 5.24654 5.37894 5.62828 5.74399 5.76609 6.19147 6.42261 6.59679 7.03276 7.42900 8.94742 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020320 B = 0.005977 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.607336 B = 4683.277071 C = 5377.899424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.124 3.876 4 C -0.170 4.170 5 C -0.105 4.105 6 C 0.039 3.961 7 F -0.151 7.151 8 C -0.110 4.110 9 C -0.100 4.100 10 C 0.116 3.884 11 H 0.058 0.942 12 C -0.126 4.126 13 C -0.136 4.136 14 C 0.197 3.803 15 H 0.003 0.997 16 C -0.564 4.564 17 H 0.063 0.937 18 C 0.022 3.978 19 N -0.904 5.904 20 Si 0.960 3.040 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.263 1.263 24 O -0.386 6.386 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.180 0.820 29 H 0.171 0.829 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.234 2.218 5.672 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.078 3.922 4 C -0.188 4.188 5 C -0.124 4.124 6 C 0.020 3.980 7 F -0.130 7.130 8 C -0.129 4.129 9 C -0.101 4.101 10 C 0.058 3.942 11 H 0.076 0.924 12 C -0.163 4.163 13 C -0.173 4.173 14 C 0.141 3.859 15 H 0.020 0.980 16 C -0.602 4.602 17 H 0.081 0.919 18 C -0.180 4.180 19 N -0.541 5.541 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.187 1.187 24 O -0.306 6.306 25 H 0.135 0.865 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.197 0.803 29 H 0.189 0.811 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.999 2.343 5.421 18.943 hybrid contribution 1.043 -0.114 -0.700 1.262 sum -16.956 2.229 4.721 17.741 Atomic orbital electron populations 1.23457 0.75947 1.05823 1.02813 1.86129 1.23859 1.25921 1.88294 1.18784 0.90407 0.85944 0.97035 1.21370 1.01833 0.89713 1.05893 1.21206 0.91083 1.00311 0.99780 1.17768 0.92018 0.79647 1.08572 1.91442 1.83902 1.43091 1.94603 1.20793 1.00625 0.91126 1.00329 1.19194 0.91605 0.94644 1.04674 1.21469 0.85435 0.92298 0.94997 0.92409 1.23106 0.98210 0.99716 0.95311 1.23094 0.95727 0.99390 0.99118 1.20210 0.87288 0.88651 0.89706 0.97961 1.21804 1.30035 0.93150 1.15180 0.91855 1.25967 0.96437 0.96461 0.99148 1.70176 1.39306 1.13065 1.31595 0.85614 0.78670 0.78815 0.78500 1.19537 1.20966 1.18722 1.88687 1.13986 1.65844 1.62059 0.86527 0.90643 0.91275 0.80258 0.81135 0.86685 0.91143 0.88419 0.90300 0.91212 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -8.57 9.69 -92.95 -0.90 -9.47 16 3 C 0.12 3.64 6.66 22.50 0.15 3.79 16 4 C -0.17 -3.72 9.04 22.36 0.20 -3.51 16 5 C -0.11 -2.52 10.02 22.30 0.22 -2.30 16 6 C 0.04 1.29 7.30 22.37 0.16 1.45 16 7 F -0.15 -5.20 17.27 44.97 0.78 -4.42 16 8 C -0.11 -4.35 9.35 22.30 0.21 -4.14 16 9 C -0.10 -3.79 5.12 -19.77 -0.10 -3.90 16 10 C 0.12 5.03 3.35 30.51 0.10 5.13 16 11 H 0.06 2.58 7.80 -2.39 -0.02 2.56 16 12 C -0.13 -4.63 6.56 32.05 0.21 -4.42 16 13 C -0.14 -5.68 6.53 31.85 0.21 -5.47 16 14 C 0.20 10.72 3.35 30.32 0.10 10.82 16 15 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 16 C -0.56 -32.90 8.75 25.60 0.22 -32.67 16 17 H 0.06 3.52 7.52 -2.91 -0.02 3.50 16 18 C 0.02 1.27 5.41 84.66 0.46 1.73 16 19 N -0.90 -56.89 12.93 21.45 0.28 -56.61 16 20 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 24 O -0.39 -21.25 9.01 -148.98 -1.34 -22.59 16 25 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.08 0.74 7.66 -2.38 -0.02 0.72 16 27 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.18 2.27 6.30 -2.91 -0.02 2.25 16 29 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 30 H 0.12 5.37 7.28 -2.91 -0.02 5.35 16 31 H 0.07 2.50 8.05 -2.38 -0.02 2.48 16 32 H 0.10 2.99 8.14 -2.39 -0.02 2.98 16 33 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.07 2.86 7.66 -2.39 -0.02 2.84 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.11 299.86 5.19 -67.92 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.10 Total: 9.94 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 3.26 Total: -32.19 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.28 Total: -56.61 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -2.24 Total: -32.06 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.78 Total: -4.42 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.11 5.19 -67.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166538616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.850 kcal (2) G-P(sol) polarization free energy of solvation -73.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds