Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 C 1.50702 * 109.47439 * 240.00050 * 2 1 3 5 5 H 1.08000 * 120.00033 * 240.00427 * 4 2 1 6 6 C 1.37873 * 120.00210 * 59.99732 * 4 2 1 7 7 N 1.31513 * 119.99847 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00262 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46869 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47464 * 119.99805 * 8 6 4 11 11 H 1.48496 * 109.47454 * 240.00142 * 8 6 4 12 12 C 1.53001 * 109.47156 * 119.99541 * 2 1 3 13 13 O 1.45200 * 109.47200 * 300.00332 * 12 2 1 14 14 C 1.34709 * 116.99923 * 179.97438 * 13 12 2 15 15 O 1.21472 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.47731 * 119.99822 * 179.97438 * 14 13 12 17 17 C 1.39642 * 120.13996 * 359.97438 * 16 14 13 18 18 C 1.37936 * 119.90096 * 180.02562 * 17 16 14 19 19 C 1.38342 * 120.17840 * 359.97438 * 18 17 16 20 20 C 1.38562 * 120.28166 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.95723 * 179.97438 * 20 19 18 22 22 C 1.38207 * 120.09563 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.47196 * 300.00298 * 1 2 3 24 24 H 1.09003 * 109.47080 * 60.00496 * 1 2 3 25 25 H 1.08995 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47212 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47244 * 299.99397 * 3 2 1 28 28 H 1.08996 * 109.47382 * 59.99815 * 3 2 1 29 29 H 0.97006 * 119.99968 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47032 * 179.97438 * 12 2 1 31 31 H 1.08997 * 109.46974 * 60.00221 * 12 2 1 32 32 H 1.08001 * 120.05067 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.91067 * 180.02562 * 18 17 16 34 34 H 1.08000 * 119.86103 * 179.97438 * 19 18 17 35 35 H 1.07999 * 120.09096 * 180.27883 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6036 10 1 1.1663 -1.5868 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0366 2.4348 14 6 1.9175 -0.5488 3.6272 15 8 2.6183 -1.5398 3.6752 16 6 1.4625 0.0955 4.8763 17 6 0.6581 1.2358 4.8245 18 6 0.2366 1.8337 5.9938 19 6 0.6082 1.3064 7.2177 20 6 1.4062 0.1752 7.2779 21 9 1.7655 -0.3339 8.4766 22 6 1.8350 -0.4331 6.1133 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.7090 1.1613 -3.4845 30 1 3.1300 -0.7215 1.2491 31 1 1.6767 -1.7488 1.2493 32 1 0.3671 1.6494 3.8702 33 1 -0.3859 2.7153 5.9539 34 1 0.2756 1.7789 8.1301 35 1 2.4533 -1.3174 6.1603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184788667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -128.835920 kcal Electronic energy + Delta-G solvation = -19660.481891 eV Core-core repulsion = 16344.323978 eV Total energy + Delta-G solvation = -3316.157913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.98302 -41.63569 -39.67125 -38.23010 -36.64639 -33.33101 -32.49387 -31.64868 -27.76560 -27.55700 -27.19375 -25.31027 -23.69209 -22.16938 -20.74208 -19.52373 -18.15667 -17.86625 -17.42039 -17.24910 -17.05048 -16.90415 -16.65547 -16.41274 -14.98984 -14.93241 -14.85569 -14.66850 -14.24891 -13.69162 -13.47647 -13.22130 -13.15900 -12.97826 -12.83803 -12.60625 -12.44058 -12.32808 -12.13836 -11.74515 -11.73816 -11.29930 -11.21578 -10.72877 -10.40182 -10.27622 -9.88102 -8.04762 -6.22458 -0.51629 0.07680 1.39362 1.42231 1.45139 1.53732 1.63318 2.45178 2.56075 3.16130 3.18943 3.52607 3.71557 3.96236 4.02134 4.21774 4.25055 4.25221 4.54880 4.65775 4.82894 4.91748 5.00287 5.05676 5.16645 5.20391 5.21355 5.24445 5.35263 5.52140 5.65047 5.65248 5.72695 6.09376 6.18148 6.37475 6.64024 6.82254 7.45557 8.94940 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045518 B = 0.003916 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.989198 B = 7148.475886 C = 7572.408165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.061 3.939 3 C -0.118 4.118 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.096 3.904 13 O -0.340 6.340 14 C 0.497 3.503 15 O -0.544 6.544 16 C -0.112 4.112 17 C -0.070 4.070 18 C -0.089 4.089 19 C -0.104 4.104 20 C 0.077 3.923 21 F -0.140 7.140 22 C -0.106 4.106 23 H 0.036 0.964 24 H 0.064 0.936 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.151 0.849 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 4.539 17.521 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.023 3.977 13 O -0.255 6.255 14 C 0.344 3.656 15 O -0.436 6.436 16 C -0.113 4.113 17 C -0.088 4.088 18 C -0.106 4.106 19 C -0.122 4.122 20 C 0.058 3.942 21 F -0.119 7.119 22 C -0.125 4.125 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.169 0.831 33 H 0.200 0.800 34 H 0.194 0.806 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.070 4.344 17.380 18.176 hybrid contribution 0.797 -1.131 -0.997 1.706 sum -2.273 3.213 16.383 16.849 Atomic orbital electron populations 1.21619 0.96835 0.98630 1.00529 1.18291 0.93826 0.93382 0.88460 1.21622 0.97715 0.97748 1.00530 1.21224 1.32343 1.12474 0.91217 0.93405 1.25468 0.94962 0.95554 1.01036 1.69935 1.36656 1.23182 1.23784 0.85617 0.78169 0.78663 0.79824 1.19897 1.20532 1.20523 1.23341 0.97685 0.95322 0.81363 1.86535 1.69071 1.55373 1.14568 1.21696 0.76894 0.81621 0.85391 1.90783 1.37273 1.26896 1.88664 1.18888 1.04124 0.99307 0.88969 1.21849 0.93147 0.92258 1.01590 1.21471 0.98880 1.00718 0.89540 1.21843 0.95436 0.93421 1.01528 1.17557 1.00706 0.96205 0.79724 1.91516 1.90523 1.86857 1.42965 1.21170 1.00107 1.00813 0.90389 0.94486 0.91752 0.96260 0.96263 0.91748 0.94488 0.92813 0.93148 0.93154 0.83115 0.80022 0.80591 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.11 71.98 0.58 -4.95 16 2 C 0.06 2.93 0.58 -52.93 -0.03 2.90 16 3 C -0.12 -5.53 8.11 71.98 0.58 -4.95 16 4 C -0.53 -28.52 8.01 25.60 0.21 -28.31 16 5 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 6 C 0.03 1.58 5.15 84.65 0.44 2.02 16 7 N -0.90 -48.03 9.35 21.45 0.20 -47.83 16 8 Si 0.95 42.34 29.54 68.60 2.03 44.37 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.10 4.26 4.27 71.98 0.31 4.57 16 13 O -0.34 -13.18 8.13 -56.19 -0.46 -13.64 16 14 C 0.50 18.02 7.90 70.33 0.56 18.58 16 15 O -0.54 -22.69 16.14 19.93 0.32 -22.37 16 16 C -0.11 -3.07 5.87 -20.10 -0.12 -3.19 16 17 C -0.07 -1.46 9.62 22.54 0.22 -1.25 16 18 C -0.09 -1.18 10.03 22.22 0.22 -0.96 16 19 C -0.10 -1.41 10.02 22.37 0.22 -1.19 16 20 C 0.08 1.55 7.29 22.34 0.16 1.71 16 21 F -0.14 -2.94 17.26 44.97 0.78 -2.17 16 22 C -0.11 -2.66 9.57 22.59 0.22 -2.44 16 23 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 24 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 28 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 29 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.15 3.12 7.61 -2.91 -0.02 3.10 16 33 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.14 3.65 7.65 -2.91 -0.02 3.63 16 Total: -1.00 -61.23 303.74 7.53 -53.71 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.09 Total: 5.40 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.56 Total: -17.47 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.20 Total: -47.83 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.14 Total: -36.00 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -61.23 7.53 -53.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184788667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.127 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds