Wall clock time and date at job start Mon Mar 30 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46625 * 2 1 4 4 C 1.50697 * 109.47472 * 239.99913 * 2 1 3 5 5 H 1.07997 * 119.99916 * 239.99721 * 4 2 1 6 6 C 1.37874 * 120.00123 * 59.99813 * 4 2 1 7 7 N 1.31517 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00353 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47103 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47570 * 119.99781 * 8 6 4 11 11 H 1.48505 * 109.47295 * 240.00045 * 8 6 4 12 12 C 1.52996 * 109.47039 * 119.99714 * 2 1 3 13 13 O 1.45203 * 109.46967 * 300.00249 * 12 2 1 14 14 C 1.34727 * 116.99749 * 180.02562 * 13 12 2 15 15 O 1.21488 * 120.00251 * 0.02562 * 14 13 12 16 16 C 1.47604 * 120.00039 * 180.02562 * 14 13 12 17 17 C 1.39706 * 120.11881 * 0.24942 * 16 14 13 18 18 C 1.37819 * 119.87101 * 180.23342 * 17 16 14 19 19 C 1.38672 * 120.12089 * 359.51579 * 18 17 16 20 20 F 1.35108 * 119.87152 * 180.27863 * 19 18 17 21 21 C 1.38666 * 120.25099 * 0.25795 * 19 18 17 22 22 C 1.37811 * 120.12697 * 359.97438 * 21 19 18 23 23 H 1.08998 * 109.47314 * 299.99921 * 1 2 3 24 24 H 1.09001 * 109.47038 * 60.00311 * 1 2 3 25 25 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46598 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47158 * 299.99615 * 3 2 1 28 28 H 1.08990 * 109.47347 * 59.99754 * 3 2 1 29 29 H 0.97005 * 119.99997 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46934 * 180.02562 * 12 2 1 31 31 H 1.08992 * 109.47301 * 60.00459 * 12 2 1 32 32 H 1.07998 * 120.06388 * 0.02593 * 17 16 14 33 33 H 1.08002 * 119.94069 * 179.79916 * 18 17 16 34 34 H 1.08005 * 119.93448 * 180.02562 * 21 19 18 35 35 H 1.07994 * 120.06823 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1467 -2.2870 -3.6037 10 1 1.1663 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2492 13 8 1.5559 -0.0366 2.4348 14 6 1.9183 -0.5482 3.6273 15 8 2.6200 -1.5388 3.6754 16 6 1.4629 0.0948 4.8754 17 6 0.6517 1.2310 4.8230 18 6 0.2334 1.8302 5.9916 19 6 0.6080 1.3014 7.2176 20 9 0.1904 1.8895 8.3600 21 6 1.4091 0.1711 7.2754 22 6 1.8372 -0.4335 6.1134 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8899 29 1 0.7090 1.1613 -3.4845 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7488 1.2493 32 1 0.3557 1.6410 3.8687 33 1 -0.3911 2.7105 5.9524 34 1 1.6975 -0.2367 8.2330 35 1 2.4608 -1.3140 6.1595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184817956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:09 Heat of formation + Delta-G solvation = -116.704125 kcal Electronic energy + Delta-G solvation = -19622.855630 eV Core-core repulsion = 16307.223791 eV Total energy + Delta-G solvation = -3315.631839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.21616 -40.24579 -38.59323 -36.54599 -34.88253 -31.56973 -31.32481 -30.88396 -26.00495 -25.65044 -25.21328 -23.77377 -23.17460 -20.82948 -18.88823 -18.16017 -17.59258 -16.65626 -15.96882 -15.95351 -15.72902 -15.69881 -14.92270 -14.61255 -13.85804 -13.50115 -13.40977 -13.24046 -12.99992 -12.61568 -12.35088 -11.87327 -11.50956 -11.28848 -11.20993 -11.00408 -10.69769 -10.45296 -10.32680 -10.15641 -9.93946 -9.45449 -9.42191 -9.35568 -9.01306 -8.78189 -8.40353 -6.04589 -4.16120 0.44076 0.98173 2.58019 3.08559 3.25414 3.34074 3.38812 3.55519 3.90948 4.36421 4.46020 4.58833 4.87692 4.99700 5.13999 5.22157 5.62307 5.66987 5.80327 5.91605 6.04313 6.06998 6.11003 6.43095 6.52502 6.70263 6.95036 6.98375 7.10196 7.11006 7.36889 7.59108 7.67847 8.02249 8.09109 8.18221 8.36267 8.83976 9.49674 10.96651 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044794 B = 0.003867 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.929386 B = 7239.110198 C = 7672.982879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.085 3.915 13 O -0.343 6.343 14 C 0.500 3.500 15 O -0.515 6.515 16 C -0.128 4.128 17 C -0.031 4.031 18 C -0.167 4.167 19 C 0.125 3.875 20 F -0.136 7.136 21 C -0.168 4.168 22 C -0.030 4.030 23 H 0.016 0.984 24 H 0.084 0.916 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 2.020 16.184 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.012 3.988 13 O -0.258 6.258 14 C 0.344 3.656 15 O -0.406 6.406 16 C -0.130 4.130 17 C -0.049 4.049 18 C -0.186 4.186 19 C 0.106 3.894 20 F -0.115 7.115 21 C -0.187 4.187 22 C -0.048 4.048 23 H 0.035 0.965 24 H 0.103 0.897 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.338 1.868 16.029 16.193 hybrid contribution 0.351 -0.498 -0.662 0.900 sum -0.986 1.370 15.367 15.459 Atomic orbital electron populations 1.21771 0.97268 0.99001 1.00661 1.18267 0.93465 0.93113 0.88258 1.21772 0.98131 0.98138 1.00664 1.20970 1.31949 1.12316 0.89766 0.92417 1.24853 0.94780 0.94903 0.98797 1.69838 1.36359 1.22582 1.23218 0.86484 0.78660 0.79706 0.82847 1.19764 1.20951 1.20957 1.23734 0.98325 0.95869 0.80830 1.86563 1.68982 1.55662 1.14622 1.20989 0.77676 0.81962 0.84964 1.90802 1.35879 1.25468 1.88426 1.19392 1.03357 0.98608 0.91608 1.21494 0.91954 0.92227 0.99194 1.21177 1.03992 1.02727 0.90682 1.18038 0.96389 0.93029 0.81975 1.91520 1.88255 1.83162 1.48538 1.21062 1.01115 0.96519 0.99991 1.21151 0.95602 0.98361 0.89727 0.96482 0.89712 0.95797 0.95798 0.89707 0.96482 0.92946 0.92355 0.92352 0.82875 0.83834 0.83928 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.11 37.16 0.30 -2.73 16 2 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16 3 C -0.13 -3.04 8.11 37.16 0.30 -2.73 16 4 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.58 9.35 55.43 0.52 -23.06 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.08 1.85 4.27 37.16 0.16 2.00 16 13 O -0.34 -6.62 8.13 -40.57 -0.33 -6.95 16 14 C 0.50 8.78 7.89 34.55 0.27 9.06 16 15 O -0.51 -10.16 16.13 -19.26 -0.31 -10.47 16 16 C -0.13 -1.76 5.87 -104.98 -0.62 -2.38 16 17 C -0.03 -0.36 9.61 -39.19 -0.38 -0.74 16 18 C -0.17 -1.69 10.01 -39.57 -0.40 -2.09 16 19 C 0.13 1.29 7.31 -39.26 -0.29 1.00 16 20 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 21 C -0.17 -1.63 10.01 -39.58 -0.40 -2.03 16 22 C -0.03 -0.35 9.59 -39.19 -0.38 -0.72 16 23 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 24 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 28 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 29 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.15 1.80 7.61 -52.49 -0.40 1.40 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.15 1.59 7.65 -52.49 -0.40 1.19 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -28.02 303.73 -6.70 -34.72 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.31 Total: -1.16 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.87 Total: -11.84 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.52 Total: -23.06 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.64 Total: -17.42 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.02 -6.70 -34.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184817956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.983 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds